Wall clock time and date at job start Mon Mar 30 2020 01:28:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09003 * 109.46428 * 2 1 4 4 C 1.50694 * 109.47201 * 120.00273 * 2 1 3 5 5 H 1.08007 * 120.00069 * 120.00235 * 4 2 1 6 6 C 1.37876 * 119.99946 * 299.72606 * 4 2 1 7 7 N 1.31515 * 120.00032 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 119.99877 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.47335 * 359.97438 * 8 6 4 10 10 H 1.48493 * 109.47389 * 120.00073 * 8 6 4 11 11 H 1.48502 * 109.47230 * 239.99844 * 8 6 4 12 12 N 1.46499 * 109.46942 * 240.00590 * 2 1 3 13 13 C 1.46507 * 120.00080 * 299.99453 * 12 2 1 14 14 C 1.34772 * 120.00260 * 119.99835 * 12 2 1 15 15 O 1.21566 * 119.99790 * 6.93882 * 14 12 2 16 16 C 1.47755 * 120.00058 * 186.93702 * 14 12 2 17 17 C 1.39801 * 120.03785 * 20.44629 * 16 14 12 18 18 C 1.37873 * 120.20212 * 179.78352 * 17 16 14 19 19 C 1.38468 * 120.27544 * 0.47075 * 18 17 16 20 20 F 1.35101 * 119.96610 * 179.76312 * 19 18 17 21 21 C 1.40026 * 120.07194 * 359.78748 * 19 18 17 22 22 C 1.43199 * 120.10434 * 180.02562 * 21 19 18 23 23 N 8.35976 * 127.74486 * 269.75010 * 2 1 3 24 24 C 1.39307 * 120.03566 * 200.72039 * 16 14 12 25 25 H 1.09004 * 109.46973 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47302 * 299.99513 * 1 2 3 27 27 H 1.08996 * 109.47305 * 59.99804 * 1 2 3 28 28 H 0.97005 * 119.99959 * 179.97438 * 7 6 4 29 29 H 1.09002 * 109.46770 * 86.58914 * 13 12 2 30 30 H 1.08994 * 109.47251 * 206.59204 * 13 12 2 31 31 H 1.09000 * 109.46925 * 326.58871 * 13 12 2 32 32 H 1.08001 * 119.89982 * 0.02562 * 17 16 14 33 33 H 1.07995 * 119.86611 * 180.21391 * 18 17 16 34 34 H 1.08001 * 120.14019 * 359.95437 * 24 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6534 -1.5886 1.1312 6 6 1.7040 -0.2361 2.4826 7 7 0.9527 0.8366 2.6034 8 14 2.3273 -1.1164 4.0078 9 1 3.1467 -2.2870 3.6036 10 1 3.1574 -0.1847 4.8126 11 1 1.1726 -1.5777 4.8197 12 7 2.0183 -0.6905 -1.1962 13 6 1.6645 -2.0931 -1.4282 14 6 2.7931 -0.0355 -2.0834 15 8 3.1911 1.0853 -1.8317 16 6 3.1589 -0.6796 -3.3619 17 6 2.3960 -1.7432 -3.8530 18 6 2.7317 -2.3438 -5.0478 19 6 3.8317 -1.9048 -5.7650 20 9 4.1577 -2.5010 -6.9327 21 6 4.6071 -0.8439 -5.2811 22 6 5.7446 -0.3890 -6.0226 23 7 6.6475 -0.0288 -6.6104 24 6 4.2677 -0.2314 -4.0763 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 0.7214 1.1700 3.4844 29 1 0.7070 -2.1453 -1.9465 30 1 2.4341 -2.5659 -2.0382 31 1 1.5890 -2.6116 -0.4724 32 1 1.5389 -2.0929 -3.2968 33 1 2.1365 -3.1627 -5.4239 34 1 4.8616 0.5876 -3.6982 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000278698216.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:10 Heat of formation + Delta-G solvation = -18.091453 kcal Electronic energy + Delta-G solvation = -20493.192090 eV Core-core repulsion = 17113.214507 eV Total energy + Delta-G solvation = -3379.977583 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 276.101 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -50.19076 -41.48818 -39.50428 -37.65908 -37.22349 -34.95405 -32.91934 -32.23992 -30.69913 -27.99391 -27.25327 -25.16622 -25.05671 -22.82661 -21.17325 -19.57997 -18.91284 -18.28814 -18.04893 -17.19892 -17.04485 -16.86068 -16.26589 -15.96424 -15.31696 -15.07470 -14.93935 -14.79925 -14.49013 -14.43095 -13.98658 -13.94704 -13.73794 -13.46353 -13.22402 -12.96816 -12.73856 -12.64815 -12.61612 -12.17508 -12.08049 -11.86344 -11.13219 -10.79657 -10.48287 -10.24540 -9.95952 -9.31025 -8.11364 -6.26840 -0.64061 -0.21167 1.36415 1.43553 1.45994 1.47580 1.56676 2.02709 2.23164 2.46255 2.61670 2.66497 2.86336 3.18004 3.52762 3.58166 3.91103 4.04186 4.35624 4.48806 4.70550 4.72305 4.75531 4.84658 4.91077 4.98373 5.08665 5.11585 5.15134 5.50370 5.54449 5.65175 5.71664 6.08039 6.20672 6.21016 6.79382 6.81435 7.29985 7.47486 8.93050 Molecular weight = 276.10amu Principal moments of inertia in cm(-1) A = 0.029559 B = 0.004116 C = 0.003979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.036256 B = 6801.519073 C = 7035.996732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.260 3.740 3 H 0.009 0.991 4 C -0.535 4.535 5 H 0.064 0.936 6 C 0.016 3.984 7 N -0.917 5.917 8 Si 0.961 3.039 9 H -0.264 1.264 10 H -0.290 1.290 11 H -0.275 1.275 12 N -0.589 5.589 13 C 0.056 3.944 14 C 0.537 3.463 15 O -0.599 6.599 16 C -0.144 4.144 17 C -0.033 4.033 18 C -0.133 4.133 19 C 0.170 3.830 20 F -0.126 7.126 21 C -0.076 4.076 22 C 0.273 3.727 23 N -0.443 5.443 24 C 0.010 3.990 25 H 0.053 0.947 26 H 0.064 0.936 27 H 0.025 0.975 28 H 0.263 0.737 29 H 0.092 0.908 30 H 0.103 0.897 31 H 0.071 0.929 32 H 0.194 0.806 33 H 0.198 0.802 34 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.525 -11.883 -13.937 18.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.158 3.842 3 H 0.027 0.973 4 C -0.574 4.574 5 H 0.082 0.918 6 C -0.183 4.183 7 N -0.556 5.556 8 Si 0.786 3.214 9 H -0.188 1.188 10 H -0.217 1.217 11 H -0.201 1.201 12 N -0.318 5.318 13 C -0.084 4.084 14 C 0.326 3.674 15 O -0.482 6.482 16 C -0.148 4.148 17 C -0.052 4.052 18 C -0.151 4.151 19 C 0.148 3.852 20 F -0.104 7.104 21 C -0.081 4.081 22 C -0.042 4.042 23 N -0.119 5.119 24 C -0.012 4.012 25 H 0.072 0.928 26 H 0.083 0.917 27 H 0.044 0.956 28 H 0.072 0.928 29 H 0.110 0.890 30 H 0.121 0.879 31 H 0.090 0.910 32 H 0.211 0.789 33 H 0.215 0.785 34 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -0.013 -10.686 -14.599 18.092 hybrid contribution 0.313 0.217 1.218 1.276 sum 0.300 -10.470 -13.381 16.993 Atomic orbital electron populations 1.21871 0.96493 1.00601 1.00131 1.18598 0.91912 0.92212 0.81439 0.97270 1.21617 1.31735 1.12973 0.91049 0.91823 1.25678 0.95159 0.95582 1.01917 1.70027 1.37664 1.23657 1.24270 0.85466 0.78169 0.78525 0.79196 1.18769 1.21670 1.20075 1.48105 1.48204 1.13377 1.22072 1.22650 1.01606 0.80408 1.03784 1.18746 0.78715 0.85438 0.84458 1.90738 1.56085 1.22225 1.79149 1.19779 0.98964 1.00289 0.95736 1.22749 0.98729 0.89822 0.93855 1.21449 0.96078 1.03380 0.94232 1.17998 0.94377 0.90551 0.82253 1.91571 1.92030 1.81779 1.45037 1.15721 0.94508 1.01310 0.96555 1.25484 0.92693 0.93112 0.92882 1.81243 1.11695 1.09167 1.09800 1.21017 0.94098 0.96092 0.89982 0.92774 0.91718 0.95591 0.92758 0.89029 0.87941 0.91015 0.78931 0.78525 0.84391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.79 8.97 71.98 0.65 -5.14 16 2 C 0.26 12.54 2.63 44.25 0.12 12.66 16 3 H 0.01 0.55 6.92 -2.39 -0.02 0.53 16 4 C -0.54 -27.38 8.01 25.60 0.21 -27.17 16 5 H 0.06 3.14 7.28 -2.91 -0.02 3.12 16 6 C 0.02 0.85 5.30 84.65 0.45 1.30 16 7 N -0.92 -51.05 11.34 21.45 0.24 -50.81 16 8 Si 0.96 41.46 29.54 68.60 2.03 43.48 16 9 H -0.26 -10.85 7.11 99.48 0.71 -10.15 16 10 H -0.29 -12.79 7.11 99.48 0.71 -12.08 16 11 H -0.28 -11.45 7.11 99.48 0.71 -10.74 16 12 N -0.59 -21.82 2.75 -830.31 -2.29 -24.10 16 13 C 0.06 1.34 7.67 127.77 0.98 2.32 16 14 C 0.54 20.08 7.52 86.76 0.65 20.73 16 15 O -0.60 -28.85 15.87 -3.92 -0.06 -28.92 16 16 C -0.14 -3.60 5.56 -20.13 -0.11 -3.71 16 17 C -0.03 -0.49 7.60 22.56 0.17 -0.32 16 18 C -0.13 -1.37 10.00 22.24 0.22 -1.15 16 19 C 0.17 2.69 7.28 22.76 0.17 2.86 16 20 F -0.13 -2.14 16.80 44.97 0.76 -1.38 16 21 C -0.08 -1.58 5.73 -21.33 -0.12 -1.71 16 22 C 0.27 6.84 14.96 88.33 1.32 8.16 16 23 N -0.44 -12.99 18.54 19.00 0.35 -12.64 16 24 C 0.01 0.24 9.29 22.80 0.21 0.45 16 25 H 0.05 2.07 7.67 -2.38 -0.02 2.05 16 26 H 0.06 3.24 6.09 -2.39 -0.01 3.23 16 27 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 28 H 0.26 13.94 8.31 -92.70 -0.77 13.17 16 29 H 0.09 1.52 6.98 -2.39 -0.02 1.50 16 30 H 0.10 1.72 5.27 -2.39 -0.01 1.71 16 31 H 0.07 1.95 6.98 -2.39 -0.02 1.93 16 32 H 0.19 2.04 4.01 -2.91 -0.01 2.03 16 33 H 0.20 0.44 8.06 -2.91 -0.02 0.42 16 34 H 0.14 3.73 7.78 -2.91 -0.02 3.71 16 Total: -1.00 -70.75 300.17 7.09 -63.66 By element: Atomic # 1 Polarization: 0.26 SS G_CDS: 1.16 Total: 1.42 kcal Atomic # 6 Polarization: 4.38 SS G_CDS: 4.91 Total: 9.29 kcal Atomic # 7 Polarization: -85.86 SS G_CDS: -1.69 Total: -87.55 kcal Atomic # 8 Polarization: -28.85 SS G_CDS: -0.06 Total: -28.92 kcal Atomic # 9 Polarization: -2.14 SS G_CDS: 0.76 Total: -1.38 kcal Atomic # 14 Polarization: 41.46 SS G_CDS: 2.03 Total: 43.48 kcal Total: -70.75 7.09 -63.66 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000278698216.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.567 kcal (2) G-P(sol) polarization free energy of solvation -70.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds