Wall clock time and date at job start Mon Mar 30 2020 01:30:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46502 * 109.46965 * 2 1 4 4 C 1.46497 * 119.99937 * 277.52246 * 3 2 1 5 5 C 1.50704 * 109.47128 * 269.99763 * 4 3 2 6 6 H 1.08003 * 119.99590 * 0.02562 * 5 4 3 7 7 C 1.37874 * 120.00412 * 180.02562 * 5 4 3 8 8 N 1.31519 * 119.99728 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00128 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47190 * 89.99681 * 9 7 5 11 11 H 1.48507 * 109.46811 * 209.99603 * 9 7 5 12 12 H 1.48494 * 109.47087 * 329.99414 * 9 7 5 13 13 C 1.34771 * 119.99681 * 97.52017 * 3 2 1 14 14 O 1.21571 * 119.99710 * 185.77784 * 13 3 2 15 15 C 1.47754 * 120.00513 * 5.77494 * 13 3 2 16 16 C 1.39808 * 120.03771 * 134.18711 * 15 13 3 17 17 C 1.37874 * 120.19598 * 180.02562 * 16 15 13 18 18 C 1.38461 * 120.27980 * 359.97438 * 17 16 15 19 19 F 1.35099 * 119.95978 * 179.97438 * 18 17 16 20 20 C 1.40018 * 120.07193 * 359.97438 * 18 17 16 21 21 C 1.43204 * 120.09654 * 179.72293 * 20 18 17 22 22 N 5.34142 * 67.08845 * 113.62158 * 2 1 3 23 23 C 1.39308 * 120.03312 * 314.16653 * 15 13 3 24 24 H 1.09007 * 109.46823 * 189.47556 * 1 2 3 25 25 H 1.08993 * 109.47441 * 309.47583 * 1 2 3 26 26 H 1.08998 * 109.46977 * 69.48089 * 1 2 3 27 27 H 1.09002 * 109.47202 * 240.00327 * 2 1 3 28 28 H 1.08993 * 109.47131 * 119.99915 * 2 1 3 29 29 H 1.08995 * 109.47512 * 29.99540 * 4 3 2 30 30 H 1.09004 * 109.47132 * 150.00042 * 4 3 2 31 31 H 0.96994 * 119.99799 * 180.02562 * 8 7 5 32 32 H 1.07999 * 119.90075 * 359.97438 * 16 15 13 33 33 H 1.08006 * 119.85668 * 179.97438 * 17 16 15 34 34 H 1.07992 * 120.14039 * 0.02562 * 23 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1059 2.1272 -1.2578 5 6 3.4640 1.9135 -1.8751 6 1 4.1892 1.2846 -1.3801 7 6 3.7807 2.5209 -3.0716 8 7 2.8974 3.2864 -3.6746 9 14 5.4639 2.2554 -3.8370 10 1 5.4187 1.0730 -4.7343 11 1 5.8463 3.4574 -4.6209 12 1 6.4646 2.0250 -2.7644 13 6 2.3869 1.9656 1.1572 14 8 2.6918 3.1423 1.1737 15 6 2.4204 1.1762 2.4057 16 6 3.5186 1.2728 3.2655 17 6 3.5535 0.5373 4.4312 18 6 2.5018 -0.3016 4.7591 19 9 2.5430 -1.0198 5.9026 20 6 1.3959 -0.4063 3.9068 21 6 0.3106 -1.2783 4.2425 22 7 -0.5495 -1.9714 4.5078 23 6 1.3575 0.3351 2.7275 24 1 -0.3633 -1.0137 0.1692 25 1 -0.3634 0.6533 0.7932 26 1 -0.3633 0.3602 -0.9625 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 1.3356 1.7747 -1.9437 30 1 1.9591 3.1893 -1.0613 31 1 3.1201 3.7133 -4.5165 32 1 4.3423 1.9249 3.0155 33 1 4.4047 0.6158 5.0912 34 1 0.5076 0.2578 2.0658 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000279266498.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:52 Heat of formation + Delta-G solvation = -15.344300 kcal Electronic energy + Delta-G solvation = -20611.338167 eV Core-core repulsion = 17231.479710 eV Total energy + Delta-G solvation = -3379.858458 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 276.101 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.35138 -40.30243 -38.25645 -36.59131 -35.61627 -32.99227 -31.83679 -31.12805 -30.24611 -27.27869 -24.47462 -23.96809 -23.17871 -22.54335 -20.09084 -18.22727 -17.72946 -16.98039 -16.59794 -16.39867 -16.09036 -15.53874 -14.87061 -14.65920 -14.27713 -13.96097 -13.88353 -13.58956 -13.45289 -13.27309 -12.89972 -12.64116 -12.49260 -12.17945 -12.06109 -11.76786 -11.45414 -11.26037 -10.95063 -10.87859 -10.64029 -10.21974 -9.74269 -9.41596 -9.31676 -8.93918 -8.50418 -7.83922 -6.11809 -4.17300 0.29800 0.67425 2.35867 2.50525 3.15639 3.25794 3.32975 3.35612 3.43759 3.49803 3.71834 3.80463 4.35916 4.37719 4.60273 4.80807 4.90168 5.18780 5.22893 5.26078 5.43558 5.49940 5.52903 5.66347 5.75320 5.87919 6.02406 6.13547 6.31687 6.38510 6.93961 7.18653 7.32763 7.39458 7.83707 8.13297 8.20734 8.72867 8.90381 9.48208 10.96334 Molecular weight = 276.10amu Principal moments of inertia in cm(-1) A = 0.025137 B = 0.004651 C = 0.004260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.613153 B = 6019.159976 C = 6571.217332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.094 3.906 3 N -0.585 5.585 4 C 0.245 3.755 5 C -0.531 4.531 6 H 0.059 0.941 7 C 0.063 3.937 8 N -0.893 5.893 9 Si 0.898 3.102 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 C 0.547 3.453 14 O -0.528 6.528 15 C -0.122 4.122 16 C -0.012 4.012 17 C -0.156 4.156 18 C 0.155 3.845 19 F -0.127 7.127 20 C -0.070 4.070 21 C 0.256 3.744 22 N -0.405 5.405 23 C -0.031 4.031 24 H 0.064 0.936 25 H 0.057 0.943 26 H 0.069 0.931 27 H 0.086 0.914 28 H 0.073 0.927 29 H 0.036 0.964 30 H 0.048 0.952 31 H 0.264 0.736 32 H 0.152 0.848 33 H 0.152 0.848 34 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.953 -7.493 13.155 15.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.030 4.030 3 N -0.316 5.316 4 C 0.126 3.874 5 C -0.570 4.570 6 H 0.077 0.923 7 C -0.140 4.140 8 N -0.531 5.531 9 Si 0.726 3.274 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.198 1.198 13 C 0.333 3.667 14 O -0.406 6.406 15 C -0.125 4.125 16 C -0.032 4.032 17 C -0.175 4.175 18 C 0.133 3.867 19 F -0.106 7.106 20 C -0.075 4.075 21 C -0.059 4.059 22 N -0.080 5.080 23 C -0.052 4.052 24 H 0.083 0.917 25 H 0.075 0.925 26 H 0.088 0.912 27 H 0.104 0.896 28 H 0.091 0.909 29 H 0.054 0.946 30 H 0.066 0.934 31 H 0.074 0.926 32 H 0.169 0.831 33 H 0.170 0.830 34 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -2.165 -7.851 13.401 15.682 hybrid contribution 1.242 -0.078 -0.429 1.316 sum -0.923 -7.928 12.973 15.232 Atomic orbital electron populations 1.22379 0.96614 1.01581 1.03023 1.21709 0.93670 0.84307 1.03348 1.48232 1.61468 1.13360 1.08502 1.19367 0.97257 0.92868 0.77900 1.21410 0.99421 1.30165 1.05966 0.92315 1.24927 0.97375 0.94797 0.96868 1.69927 1.34585 1.31163 1.17464 0.86491 0.84031 0.77672 0.79200 1.20616 1.21065 1.19844 1.17956 0.79005 0.86893 0.82840 1.90801 1.48816 1.15314 1.85637 1.20296 0.95597 0.98908 0.97731 1.21368 0.97001 0.94344 0.90444 1.21053 0.98843 0.98290 0.99321 1.17790 0.94220 0.92357 0.82377 1.91550 1.96410 1.75663 1.46934 1.15818 0.91628 1.01956 0.98060 1.25257 0.93157 0.93327 0.94168 1.81243 1.09992 1.09539 1.07188 1.21910 0.99046 0.90865 0.93334 0.91740 0.92476 0.91170 0.89560 0.90919 0.94613 0.93434 0.92612 0.83058 0.83007 0.82270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.18 9.15 37.16 0.34 -1.84 16 2 C 0.09 1.36 5.60 -4.04 -0.02 1.34 16 3 N -0.59 -11.25 2.46 -176.21 -0.43 -11.68 16 4 C 0.24 5.95 5.22 -5.19 -0.03 5.93 16 5 C -0.53 -14.15 9.39 -34.44 -0.32 -14.48 16 6 H 0.06 1.55 7.81 -52.48 -0.41 1.14 16 7 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 8 N -0.89 -25.47 13.29 55.43 0.74 -24.74 16 9 Si 0.90 20.90 29.54 -169.99 -5.02 15.88 16 10 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 11 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 12 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 13 C 0.55 10.30 7.26 -12.37 -0.09 10.21 16 14 O -0.53 -12.18 16.54 5.30 0.09 -12.09 16 15 C -0.12 -1.66 5.07 -105.02 -0.53 -2.19 16 16 C -0.01 -0.14 9.68 -39.13 -0.38 -0.52 16 17 C -0.16 -1.40 9.99 -39.63 -0.40 -1.80 16 18 C 0.15 1.56 7.28 -38.83 -0.28 1.28 16 19 F -0.13 -1.35 16.80 2.25 0.04 -1.31 16 20 C -0.07 -0.76 5.73 -106.89 -0.61 -1.37 16 21 C 0.26 3.10 14.96 -22.47 -0.34 2.76 16 22 N -0.40 -5.60 18.54 41.84 0.78 -4.82 16 23 C -0.03 -0.36 7.11 -38.77 -0.28 -0.63 16 24 H 0.06 0.63 8.14 -51.92 -0.42 0.21 16 25 H 0.06 0.67 6.32 -51.93 -0.33 0.34 16 26 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.09 1.31 8.13 -51.93 -0.42 0.89 16 28 H 0.07 0.89 5.10 -51.93 -0.26 0.62 16 29 H 0.04 0.88 8.07 -51.93 -0.42 0.46 16 30 H 0.05 1.31 7.35 -51.93 -0.38 0.93 16 31 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 32 H 0.15 1.65 8.06 -52.49 -0.42 1.23 16 33 H 0.15 0.94 8.06 -52.48 -0.42 0.52 16 34 H 0.16 1.74 3.70 -52.49 -0.19 1.55 16 LS Contribution 307.58 15.07 4.64 4.64 Total: -1.00 -31.23 307.58 -5.46 -36.69 By element: Atomic # 1 Polarization: 0.37 SS G_CDS: -3.25 Total: -2.87 kcal Atomic # 6 Polarization: 3.34 SS G_CDS: -3.04 Total: 0.31 kcal Atomic # 7 Polarization: -42.32 SS G_CDS: 1.08 Total: -41.24 kcal Atomic # 8 Polarization: -12.18 SS G_CDS: 0.09 Total: -12.09 kcal Atomic # 9 Polarization: -1.35 SS G_CDS: 0.04 Total: -1.31 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -31.23 -5.46 -36.69 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279266498.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.347 kcal (2) G-P(sol) polarization free energy of solvation -31.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds