Wall clock time and date at job start Mon Mar 30 2020 01:30:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46502 * 109.46965 * 2 1 4 4 C 1.46497 * 119.99937 * 277.52246 * 3 2 1 5 5 C 1.50704 * 109.47128 * 269.99763 * 4 3 2 6 6 H 1.08003 * 119.99590 * 0.02562 * 5 4 3 7 7 C 1.37874 * 120.00412 * 180.02562 * 5 4 3 8 8 N 1.31519 * 119.99728 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00128 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47190 * 89.99681 * 9 7 5 11 11 H 1.48507 * 109.46811 * 209.99603 * 9 7 5 12 12 H 1.48494 * 109.47087 * 329.99414 * 9 7 5 13 13 C 1.34771 * 119.99681 * 97.52017 * 3 2 1 14 14 O 1.21571 * 119.99710 * 185.77784 * 13 3 2 15 15 C 1.47754 * 120.00513 * 5.77494 * 13 3 2 16 16 C 1.39808 * 120.03771 * 134.18711 * 15 13 3 17 17 C 1.37874 * 120.19598 * 180.02562 * 16 15 13 18 18 C 1.38461 * 120.27980 * 359.97438 * 17 16 15 19 19 F 1.35099 * 119.95978 * 179.97438 * 18 17 16 20 20 C 1.40018 * 120.07193 * 359.97438 * 18 17 16 21 21 C 1.43204 * 120.09654 * 179.72293 * 20 18 17 22 22 N 5.34142 * 67.08845 * 113.62158 * 2 1 3 23 23 C 1.39308 * 120.03312 * 314.16653 * 15 13 3 24 24 H 1.09007 * 109.46823 * 189.47556 * 1 2 3 25 25 H 1.08993 * 109.47441 * 309.47583 * 1 2 3 26 26 H 1.08998 * 109.46977 * 69.48089 * 1 2 3 27 27 H 1.09002 * 109.47202 * 240.00327 * 2 1 3 28 28 H 1.08993 * 109.47131 * 119.99915 * 2 1 3 29 29 H 1.08995 * 109.47512 * 29.99540 * 4 3 2 30 30 H 1.09004 * 109.47132 * 150.00042 * 4 3 2 31 31 H 0.96994 * 119.99799 * 180.02562 * 8 7 5 32 32 H 1.07999 * 119.90075 * 359.97438 * 16 15 13 33 33 H 1.08006 * 119.85668 * 179.97438 * 17 16 15 34 34 H 1.07992 * 120.14039 * 0.02562 * 23 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1059 2.1272 -1.2578 5 6 3.4640 1.9135 -1.8751 6 1 4.1892 1.2846 -1.3801 7 6 3.7807 2.5209 -3.0716 8 7 2.8974 3.2864 -3.6746 9 14 5.4639 2.2554 -3.8370 10 1 5.4187 1.0730 -4.7343 11 1 5.8463 3.4574 -4.6209 12 1 6.4646 2.0250 -2.7644 13 6 2.3869 1.9656 1.1572 14 8 2.6918 3.1423 1.1737 15 6 2.4204 1.1762 2.4057 16 6 3.5186 1.2728 3.2655 17 6 3.5535 0.5373 4.4312 18 6 2.5018 -0.3016 4.7591 19 9 2.5430 -1.0198 5.9026 20 6 1.3959 -0.4063 3.9068 21 6 0.3106 -1.2783 4.2425 22 7 -0.5495 -1.9714 4.5078 23 6 1.3575 0.3351 2.7275 24 1 -0.3633 -1.0137 0.1692 25 1 -0.3634 0.6533 0.7932 26 1 -0.3633 0.3602 -0.9625 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 1.3356 1.7747 -1.9437 30 1 1.9591 3.1893 -1.0613 31 1 3.1201 3.7133 -4.5165 32 1 4.3423 1.9249 3.0155 33 1 4.4047 0.6158 5.0912 34 1 0.5076 0.2578 2.0658 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000279266498.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:52 Heat of formation + Delta-G solvation = -33.540584 kcal Electronic energy + Delta-G solvation = -20612.127218 eV Core-core repulsion = 17231.479710 eV Total energy + Delta-G solvation = -3380.647508 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 276.101 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -50.19764 -41.51425 -39.48481 -37.60309 -37.12641 -34.93793 -32.80819 -32.33488 -31.49146 -29.07641 -25.73247 -25.13034 -24.54489 -23.79974 -21.29887 -19.40642 -18.75451 -18.53100 -18.01605 -17.70130 -17.06790 -16.90363 -16.26436 -16.02723 -15.71098 -15.01412 -14.92601 -14.69765 -14.53679 -14.37906 -14.19374 -13.93726 -13.69335 -13.50144 -13.32301 -13.16088 -13.04097 -12.70992 -12.52262 -12.32378 -12.08756 -11.95352 -11.68891 -10.84757 -10.60678 -10.28605 -9.93438 -9.48956 -8.19525 -6.33908 -0.61804 -0.22622 1.39916 1.41315 1.43423 1.49419 1.54039 1.90578 2.22379 2.43842 2.49512 2.63066 2.84555 3.11203 3.42470 3.55029 3.87220 4.03916 4.08175 4.30918 4.38228 4.49498 4.64530 4.70961 4.84469 4.89707 4.94723 5.04794 5.14364 5.26834 5.36648 5.47763 5.57866 5.83189 6.07994 6.24574 6.66295 6.76360 7.24626 7.40677 8.87838 Molecular weight = 276.10amu Principal moments of inertia in cm(-1) A = 0.025137 B = 0.004651 C = 0.004260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.613153 B = 6019.159976 C = 6571.217332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.089 3.911 3 N -0.591 5.591 4 C 0.260 3.740 5 C -0.543 4.543 6 H 0.058 0.942 7 C 0.010 3.990 8 N -0.928 5.928 9 Si 0.966 3.034 10 H -0.267 1.267 11 H -0.284 1.284 12 H -0.268 1.268 13 C 0.544 3.456 14 O -0.583 6.583 15 C -0.138 4.138 16 C -0.008 4.008 17 C -0.132 4.132 18 C 0.167 3.833 19 F -0.125 7.125 20 C -0.066 4.066 21 C 0.274 3.726 22 N -0.435 5.435 23 C -0.019 4.019 24 H 0.097 0.903 25 H 0.062 0.938 26 H 0.052 0.948 27 H 0.078 0.922 28 H 0.102 0.898 29 H 0.026 0.974 30 H 0.004 0.996 31 H 0.266 0.734 32 H 0.153 0.847 33 H 0.189 0.811 34 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.205 -9.357 14.801 17.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.033 4.033 3 N -0.321 5.321 4 C 0.139 3.861 5 C -0.581 4.581 6 H 0.076 0.924 7 C -0.190 4.190 8 N -0.568 5.568 9 Si 0.791 3.209 10 H -0.192 1.192 11 H -0.210 1.210 12 H -0.193 1.193 13 C 0.333 3.667 14 O -0.464 6.464 15 C -0.142 4.142 16 C -0.028 4.028 17 C -0.151 4.151 18 C 0.145 3.855 19 F -0.103 7.103 20 C -0.071 4.071 21 C -0.041 4.041 22 N -0.110 5.110 23 C -0.039 4.039 24 H 0.116 0.884 25 H 0.080 0.920 26 H 0.071 0.929 27 H 0.096 0.904 28 H 0.120 0.880 29 H 0.044 0.956 30 H 0.022 0.978 31 H 0.075 0.925 32 H 0.171 0.829 33 H 0.206 0.794 34 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -1.026 -9.769 15.068 17.987 hybrid contribution 0.864 0.491 -0.852 1.309 sum -0.162 -9.278 14.216 16.976 Atomic orbital electron populations 1.22340 0.94740 1.03657 1.02327 1.21991 0.95201 0.81691 1.04400 1.48203 1.61803 1.14902 1.07182 1.18799 0.96210 0.91102 0.79998 1.21714 1.00238 1.29970 1.06216 0.92359 1.25824 1.01243 0.94432 0.97460 1.70052 1.36651 1.32154 1.17946 0.85432 0.79233 0.77886 0.78379 1.19188 1.20959 1.19296 1.18680 0.77339 0.86623 0.84093 1.90760 1.51097 1.17849 1.86729 1.19802 0.97904 1.00282 0.96171 1.21444 0.96231 0.94451 0.90656 1.21264 0.99263 0.96221 0.98313 1.17867 0.93912 0.91810 0.81902 1.91572 1.96353 1.75578 1.46827 1.15682 0.91655 1.01770 0.97972 1.25297 0.92747 0.92736 0.93317 1.81274 1.10898 1.10653 1.08202 1.21743 0.98372 0.90184 0.93640 0.88444 0.91977 0.92890 0.90366 0.87974 0.95591 0.97833 0.92467 0.82912 0.79377 0.81857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.05 9.15 71.98 0.66 -3.39 16 2 C 0.09 2.53 5.60 86.38 0.48 3.01 16 3 N -0.59 -23.30 2.46 -829.67 -2.04 -25.35 16 4 C 0.26 13.29 5.22 85.63 0.45 13.74 16 5 C -0.54 -29.70 9.39 25.60 0.24 -29.46 16 6 H 0.06 3.11 7.81 -2.91 -0.02 3.09 16 7 C 0.01 0.53 5.46 84.65 0.46 0.99 16 8 N -0.93 -54.48 13.29 21.45 0.28 -54.20 16 9 Si 0.97 43.07 29.54 68.60 2.03 45.09 16 10 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 11 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 12 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 13 C 0.54 20.89 7.26 86.76 0.63 21.52 16 14 O -0.58 -28.12 16.54 -3.94 -0.07 -28.19 16 15 C -0.14 -3.59 5.07 -20.12 -0.10 -3.69 16 16 C -0.01 -0.17 9.68 22.56 0.22 0.05 16 17 C -0.13 -1.83 9.99 22.24 0.22 -1.60 16 18 C 0.17 2.73 7.28 22.75 0.17 2.89 16 19 F -0.13 -2.16 16.80 44.97 0.76 -1.40 16 20 C -0.07 -1.23 5.73 -21.33 -0.12 -1.36 16 21 C 0.27 5.92 14.96 88.33 1.32 7.24 16 22 N -0.43 -11.15 18.54 19.01 0.35 -10.80 16 23 C -0.02 -0.39 7.11 22.80 0.16 -0.23 16 24 H 0.10 1.66 8.14 -2.38 -0.02 1.64 16 25 H 0.06 1.40 6.32 -2.39 -0.02 1.38 16 26 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 27 H 0.08 2.35 8.13 -2.39 -0.02 2.33 16 28 H 0.10 2.29 5.10 -2.39 -0.01 2.28 16 29 H 0.03 1.36 8.07 -2.39 -0.02 1.34 16 30 H 0.00 0.21 7.35 -2.39 -0.02 0.19 16 31 H 0.27 14.72 8.31 -92.71 -0.77 13.95 16 32 H 0.15 3.08 8.06 -2.91 -0.02 3.05 16 33 H 0.19 1.32 8.06 -2.91 -0.02 1.29 16 34 H 0.16 3.24 3.70 -2.91 -0.01 3.22 16 Total: -1.00 -70.52 307.58 7.25 -63.27 By element: Atomic # 1 Polarization: 0.70 SS G_CDS: 1.15 Total: 1.85 kcal Atomic # 6 Polarization: 4.93 SS G_CDS: 4.79 Total: 9.72 kcal Atomic # 7 Polarization: -88.94 SS G_CDS: -1.40 Total: -90.35 kcal Atomic # 8 Polarization: -28.12 SS G_CDS: -0.07 Total: -28.19 kcal Atomic # 9 Polarization: -2.16 SS G_CDS: 0.76 Total: -1.40 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.09 kcal Total: -70.52 7.25 -63.27 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279266498.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.734 kcal (2) G-P(sol) polarization free energy of solvation -70.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds