Wall clock time and date at job start Mon Mar 30 2020 01:51:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.52168 * 2 1 4 4 C 1.53585 * 109.49508 * 120.06902 * 2 1 3 5 5 C 1.51844 * 107.14997 * 61.19559 * 4 2 1 6 6 O 1.21303 * 121.73341 * 220.00859 * 5 4 2 7 7 C 1.47369 * 116.52569 * 40.28364 * 5 4 2 8 8 C 1.39528 * 120.75108 * 168.49858 * 7 5 4 9 9 C 1.38284 * 119.57931 * 179.41447 * 8 7 5 10 10 O 1.35980 * 119.96886 * 179.71838 * 9 8 7 11 11 C 1.42901 * 117.00452 * 179.97438 * 10 9 8 12 12 C 1.50696 * 109.47210 * 180.02562 * 11 10 9 13 13 H 1.07999 * 120.00376 * 0.02562 * 12 11 10 14 14 C 1.37884 * 119.99717 * 180.02562 * 12 11 10 15 15 N 1.31514 * 120.00181 * 0.02562 * 14 12 11 16 16 Si 1.86795 * 119.99804 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47380 * 359.97438 * 16 14 12 18 18 H 1.48504 * 109.47314 * 119.99913 * 16 14 12 19 19 H 1.48496 * 109.47103 * 239.99992 * 16 14 12 20 20 C 1.39044 * 120.06617 * 359.69418 * 9 8 7 21 21 C 1.37990 * 120.65142 * 0.13650 * 20 9 8 22 22 C 1.38832 * 120.17186 * 359.97438 * 21 20 9 23 23 O 1.35423 * 119.94199 * 179.68544 * 22 21 20 24 24 H 1.08991 * 109.47445 * 299.92624 * 1 2 3 25 25 H 1.08998 * 109.46513 * 59.92935 * 1 2 3 26 26 H 1.08996 * 109.46707 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47509 * 180.02562 * 3 2 1 28 28 H 1.09004 * 109.46700 * 300.07512 * 3 2 1 29 29 H 1.09008 * 109.47205 * 60.07035 * 3 2 1 30 30 H 1.08997 * 109.91797 * 301.78682 * 4 2 1 31 31 H 1.08994 * 109.92232 * 180.60861 * 4 2 1 32 32 H 1.07997 * 120.19680 * 359.12171 * 8 7 5 33 33 H 1.09000 * 109.47170 * 300.00585 * 11 10 9 34 34 H 1.09000 * 109.46815 * 59.99841 * 11 10 9 35 35 H 0.96998 * 119.99802 * 180.02562 * 15 14 12 36 36 H 1.08002 * 119.67203 * 180.12039 * 20 9 8 37 37 H 1.08004 * 119.91514 * 180.02562 * 21 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0413 1.4421 0.0000 4 6 2.0426 -0.7254 1.2530 5 6 1.5330 -2.1541 1.1831 6 8 1.1288 -2.7362 2.1676 7 6 1.5609 -2.7988 -0.1418 8 6 1.3432 -4.1708 -0.2723 9 6 1.3627 -4.7485 -1.5285 10 8 1.1573 -6.0859 -1.6644 11 6 1.1904 -6.6159 -2.9910 12 6 0.9437 -8.1018 -2.9445 13 1 0.7777 -8.5924 -1.9968 14 6 0.9298 -8.8352 -4.1121 15 7 1.1324 -8.2380 -5.2662 16 14 0.6233 -10.6769 -4.0546 17 1 0.4263 -11.1023 -2.6455 18 1 -0.5916 -11.0015 -4.8445 19 1 1.7920 -11.3914 -4.6279 20 6 1.5918 -3.9633 -2.6529 21 6 1.8043 -2.6053 -2.5313 22 6 1.7909 -2.0064 -1.2788 23 8 2.0063 -0.6744 -1.1643 24 1 -0.3634 0.5126 0.8905 25 1 -0.3632 0.5149 -0.8894 26 1 -0.3632 -1.0276 -0.0005 27 1 3.1313 1.4412 -0.0005 28 1 1.6773 1.9565 -0.8894 29 1 1.6794 1.9559 0.8907 30 1 1.6576 -0.2372 2.1482 31 1 3.1324 -0.7201 1.2655 32 1 1.1653 -4.7782 0.6027 33 1 0.4171 -6.1382 -3.5926 34 1 2.1670 -6.4231 -3.4350 35 1 1.1222 -8.7539 -6.0875 36 1 1.6038 -4.4209 -3.6312 37 1 1.9806 -2.0066 -3.4127 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000280393212.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:39 Heat of formation + Delta-G solvation = -97.138468 kcal Electronic energy + Delta-G solvation = -20977.261476 eV Core-core repulsion = 17685.023711 eV Total energy + Delta-G solvation = -3292.237765 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.18977 -38.91672 -38.46325 -36.29657 -34.03605 -32.92162 -31.22577 -29.86591 -28.23232 -27.72585 -27.19797 -24.17992 -22.50328 -22.27484 -21.50424 -18.84887 -18.02740 -16.96611 -16.84003 -16.29797 -15.49341 -15.22585 -15.13683 -14.82621 -14.68918 -14.49933 -14.14353 -13.71846 -13.44093 -13.04549 -12.82012 -12.61267 -12.41975 -12.33638 -12.31038 -11.91414 -11.70535 -11.30060 -11.13006 -11.01345 -10.86265 -10.57335 -10.25106 -9.87214 -9.71760 -9.31193 -8.91894 -8.61408 -7.34179 -6.28615 -4.32061 0.74555 1.66957 2.41733 3.02434 3.21466 3.28332 3.34384 3.73388 3.99440 4.16412 4.24894 4.43345 4.48862 4.59639 4.82643 4.92639 5.09055 5.14755 5.20764 5.27033 5.35710 5.39227 5.42222 5.51918 5.60964 5.76095 5.88255 5.89248 6.09324 6.19213 6.35594 6.55891 6.82710 6.85451 7.08166 7.37268 7.46359 7.64798 7.90654 8.39389 8.80559 9.33496 10.82700 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.038719 B = 0.003671 C = 0.003441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.994225 B = 7625.213415 C = 8135.532992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.122 3.878 3 C -0.137 4.137 4 C -0.191 4.191 5 C 0.405 3.595 6 O -0.448 6.448 7 C -0.214 4.214 8 C -0.079 4.079 9 C 0.115 3.885 10 O -0.314 6.314 11 C 0.191 3.809 12 C -0.524 4.524 13 H 0.072 0.928 14 C 0.060 3.940 15 N -0.894 5.894 16 Si 0.913 3.087 17 H -0.269 1.269 18 H -0.281 1.281 19 H -0.281 1.281 20 C -0.142 4.142 21 C -0.119 4.119 22 C 0.121 3.879 23 O -0.305 6.305 24 H 0.074 0.926 25 H 0.074 0.926 26 H 0.064 0.936 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.079 0.921 30 H 0.106 0.894 31 H 0.112 0.888 32 H 0.139 0.861 33 H 0.022 0.978 34 H 0.023 0.977 35 H 0.267 0.733 36 H 0.146 0.854 37 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.628 19.053 8.001 20.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.084 3.916 3 C -0.194 4.194 4 C -0.229 4.229 5 C 0.283 3.717 6 O -0.323 6.323 7 C -0.216 4.216 8 C -0.098 4.098 9 C 0.067 3.933 10 O -0.228 6.228 11 C 0.118 3.882 12 C -0.562 4.562 13 H 0.090 0.910 14 C -0.142 4.142 15 N -0.533 5.533 16 Si 0.740 3.260 17 H -0.193 1.193 18 H -0.206 1.206 19 H -0.206 1.206 20 C -0.161 4.161 21 C -0.138 4.138 22 C 0.076 3.924 23 O -0.221 6.221 24 H 0.093 0.907 25 H 0.093 0.907 26 H 0.083 0.917 27 H 0.088 0.912 28 H 0.091 0.909 29 H 0.098 0.902 30 H 0.125 0.875 31 H 0.130 0.870 32 H 0.157 0.843 33 H 0.040 0.960 34 H 0.040 0.960 35 H 0.077 0.923 36 H 0.164 0.836 37 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 1.475 18.677 8.338 20.507 hybrid contribution -0.141 -0.973 -0.335 1.039 sum 1.334 17.704 8.003 19.474 Atomic orbital electron populations 1.22487 0.94305 1.03596 1.03595 1.21826 0.94079 0.92862 0.82844 1.21790 1.02381 0.91883 1.03341 1.23109 1.04142 0.95169 1.00442 1.22396 0.73580 0.88520 0.87211 1.90546 1.36049 1.66998 1.38749 1.20152 1.12873 0.94545 0.94027 1.20332 1.00293 0.92677 0.96493 1.19061 0.95675 0.85596 0.92933 1.86175 1.84557 1.16328 1.35692 1.20693 0.96958 0.94643 0.75873 1.21010 1.50127 0.90816 0.94241 0.91019 1.24935 0.94725 0.99786 0.94741 1.69949 1.48854 1.36547 0.97915 0.86186 0.77956 0.83339 0.78513 1.19321 1.20639 1.20643 1.21577 1.01357 0.93397 0.99787 1.20335 1.04041 0.94358 0.95021 1.18816 0.98593 0.82077 0.92907 1.85778 1.75313 1.18317 1.42648 0.90690 0.90722 0.91719 0.91185 0.90948 0.90246 0.87519 0.87009 0.84296 0.95991 0.95961 0.92343 0.83620 0.84687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.74 8.30 37.16 0.31 -1.43 16 2 C 0.12 1.19 1.11 -90.32 -0.10 1.09 16 3 C -0.14 -0.90 8.85 37.16 0.33 -0.57 16 4 C -0.19 -1.92 5.28 -27.01 -0.14 -2.06 16 5 C 0.41 5.85 5.89 -30.03 -0.18 5.68 16 6 O -0.45 -7.64 17.42 5.54 0.10 -7.54 16 7 C -0.21 -3.44 5.26 -104.86 -0.55 -3.99 16 8 C -0.08 -1.45 9.58 -39.08 -0.37 -1.82 16 9 C 0.12 2.33 6.68 -39.27 -0.26 2.06 16 10 O -0.31 -7.56 10.12 -19.68 -0.20 -7.76 16 11 C 0.19 4.97 4.49 36.00 0.16 5.13 16 12 C -0.52 -14.84 9.43 -34.44 -0.32 -15.16 16 13 H 0.07 2.02 7.81 -52.49 -0.41 1.61 16 14 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 15 N -0.89 -25.51 13.29 55.43 0.74 -24.77 16 16 Si 0.91 21.14 29.54 -169.99 -5.02 16.12 16 17 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 18 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 19 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 20 C -0.14 -2.57 9.02 -39.37 -0.36 -2.92 16 21 C -0.12 -1.82 9.97 -39.45 -0.39 -2.22 16 22 C 0.12 1.81 6.01 -38.52 -0.23 1.58 16 23 O -0.31 -3.88 9.63 -17.96 -0.17 -4.06 16 24 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 26 H 0.06 0.77 6.42 -51.93 -0.33 0.44 16 27 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.08 0.37 8.14 -51.92 -0.42 -0.06 16 30 H 0.11 0.86 8.14 -51.93 -0.42 0.43 16 31 H 0.11 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.14 2.55 7.81 -52.49 -0.41 2.14 16 33 H 0.02 0.59 7.65 -51.93 -0.40 0.19 16 34 H 0.02 0.60 7.66 -51.93 -0.40 0.20 16 35 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 36 H 0.15 2.69 6.26 -52.49 -0.33 2.36 16 37 H 0.14 1.74 8.06 -52.48 -0.42 1.32 16 LS Contribution 313.62 15.07 4.73 4.73 Total: -1.00 -30.80 313.62 -6.84 -37.64 By element: Atomic # 1 Polarization: 3.49 SS G_CDS: -4.79 Total: -1.30 kcal Atomic # 6 Polarization: -10.85 SS G_CDS: -2.21 Total: -13.06 kcal Atomic # 7 Polarization: -25.51 SS G_CDS: 0.74 Total: -24.77 kcal Atomic # 8 Polarization: -19.08 SS G_CDS: -0.28 Total: -19.35 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -30.80 -6.84 -37.64 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280393212.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.498 kcal (2) G-P(sol) polarization free energy of solvation -30.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds