Wall clock time and date at job start Mon Mar 30 2020 01:51:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.52168 * 2 1 4 4 C 1.53585 * 109.49508 * 120.06902 * 2 1 3 5 5 C 1.51844 * 107.14997 * 61.19559 * 4 2 1 6 6 O 1.21303 * 121.73341 * 220.00859 * 5 4 2 7 7 C 1.47369 * 116.52569 * 40.28364 * 5 4 2 8 8 C 1.39528 * 120.75108 * 168.49858 * 7 5 4 9 9 C 1.38284 * 119.57931 * 179.41447 * 8 7 5 10 10 O 1.35980 * 119.96886 * 179.71838 * 9 8 7 11 11 C 1.42901 * 117.00452 * 179.97438 * 10 9 8 12 12 C 1.50696 * 109.47210 * 180.02562 * 11 10 9 13 13 H 1.07999 * 120.00376 * 0.02562 * 12 11 10 14 14 C 1.37884 * 119.99717 * 180.02562 * 12 11 10 15 15 N 1.31514 * 120.00181 * 0.02562 * 14 12 11 16 16 Si 1.86795 * 119.99804 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47380 * 359.97438 * 16 14 12 18 18 H 1.48504 * 109.47314 * 119.99913 * 16 14 12 19 19 H 1.48496 * 109.47103 * 239.99992 * 16 14 12 20 20 C 1.39044 * 120.06617 * 359.69418 * 9 8 7 21 21 C 1.37990 * 120.65142 * 0.13650 * 20 9 8 22 22 C 1.38832 * 120.17186 * 359.97438 * 21 20 9 23 23 O 1.35423 * 119.94199 * 179.68544 * 22 21 20 24 24 H 1.08991 * 109.47445 * 299.92624 * 1 2 3 25 25 H 1.08998 * 109.46513 * 59.92935 * 1 2 3 26 26 H 1.08996 * 109.46707 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47509 * 180.02562 * 3 2 1 28 28 H 1.09004 * 109.46700 * 300.07512 * 3 2 1 29 29 H 1.09008 * 109.47205 * 60.07035 * 3 2 1 30 30 H 1.08997 * 109.91797 * 301.78682 * 4 2 1 31 31 H 1.08994 * 109.92232 * 180.60861 * 4 2 1 32 32 H 1.07997 * 120.19680 * 359.12171 * 8 7 5 33 33 H 1.09000 * 109.47170 * 300.00585 * 11 10 9 34 34 H 1.09000 * 109.46815 * 59.99841 * 11 10 9 35 35 H 0.96998 * 119.99802 * 180.02562 * 15 14 12 36 36 H 1.08002 * 119.67203 * 180.12039 * 20 9 8 37 37 H 1.08004 * 119.91514 * 180.02562 * 21 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0413 1.4421 0.0000 4 6 2.0426 -0.7254 1.2530 5 6 1.5330 -2.1541 1.1831 6 8 1.1288 -2.7362 2.1676 7 6 1.5609 -2.7988 -0.1418 8 6 1.3432 -4.1708 -0.2723 9 6 1.3627 -4.7485 -1.5285 10 8 1.1573 -6.0859 -1.6644 11 6 1.1904 -6.6159 -2.9910 12 6 0.9437 -8.1018 -2.9445 13 1 0.7777 -8.5924 -1.9968 14 6 0.9298 -8.8352 -4.1121 15 7 1.1324 -8.2380 -5.2662 16 14 0.6233 -10.6769 -4.0546 17 1 0.4263 -11.1023 -2.6455 18 1 -0.5916 -11.0015 -4.8445 19 1 1.7920 -11.3914 -4.6279 20 6 1.5918 -3.9633 -2.6529 21 6 1.8043 -2.6053 -2.5313 22 6 1.7909 -2.0064 -1.2788 23 8 2.0063 -0.6744 -1.1643 24 1 -0.3634 0.5126 0.8905 25 1 -0.3632 0.5149 -0.8894 26 1 -0.3632 -1.0276 -0.0005 27 1 3.1313 1.4412 -0.0005 28 1 1.6773 1.9565 -0.8894 29 1 1.6794 1.9559 0.8907 30 1 1.6576 -0.2372 2.1482 31 1 3.1324 -0.7201 1.2655 32 1 1.1653 -4.7782 0.6027 33 1 0.4171 -6.1382 -3.5926 34 1 2.1670 -6.4231 -3.4350 35 1 1.1222 -8.7539 -6.0875 36 1 1.6038 -4.4209 -3.6312 37 1 1.9806 -2.0066 -3.4127 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000280393212.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:38 Heat of formation + Delta-G solvation = -115.859169 kcal Electronic energy + Delta-G solvation = -20978.073266 eV Core-core repulsion = 17685.023711 eV Total energy + Delta-G solvation = -3293.049556 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.32696 -40.45579 -39.63836 -37.73789 -35.18229 -34.86307 -32.52236 -31.24516 -29.63321 -28.91867 -28.22812 -25.78163 -24.18705 -23.57997 -22.55918 -20.14663 -19.36057 -18.71228 -18.17403 -17.65826 -16.76941 -16.75864 -16.56597 -16.22110 -16.11641 -15.74678 -15.54518 -15.00956 -14.56724 -14.38642 -14.03177 -13.79454 -13.67727 -13.24504 -13.13937 -13.01358 -12.98727 -12.89549 -12.73489 -12.56547 -12.16919 -12.08139 -11.75871 -11.38440 -11.30436 -10.87637 -10.70064 -10.28127 -8.81269 -8.41038 -6.54585 -0.56063 0.29347 1.17728 1.38945 1.39726 1.54369 1.99677 2.23898 2.52296 2.62416 2.93886 2.95911 3.42864 3.56469 3.60566 3.76449 3.86400 4.03739 4.10880 4.29671 4.49363 4.52548 4.63902 4.70389 4.75353 4.80832 4.81670 4.92696 4.96187 4.97384 4.99900 5.15094 5.23779 5.34919 5.41977 5.50957 5.81389 6.22225 6.32713 6.47661 6.74927 7.17216 8.71224 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.038719 B = 0.003671 C = 0.003441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.994225 B = 7625.213415 C = 8135.532992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.114 3.886 3 C -0.132 4.132 4 C -0.181 4.181 5 C 0.404 3.596 6 O -0.480 6.480 7 C -0.224 4.224 8 C -0.087 4.087 9 C 0.074 3.926 10 O -0.338 6.338 11 C 0.209 3.791 12 C -0.560 4.560 13 H 0.063 0.937 14 C 0.015 3.985 15 N -0.922 5.922 16 Si 0.986 3.014 17 H -0.267 1.267 18 H -0.269 1.269 19 H -0.269 1.269 20 C -0.144 4.144 21 C -0.114 4.114 22 C 0.147 3.853 23 O -0.302 6.302 24 H 0.100 0.900 25 H 0.082 0.918 26 H 0.033 0.967 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.107 0.893 30 H 0.136 0.864 31 H 0.131 0.869 32 H 0.128 0.872 33 H 0.007 0.993 34 H 0.008 0.992 35 H 0.275 0.725 36 H 0.135 0.865 37 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.044 21.488 8.506 23.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.077 3.923 3 C -0.189 4.189 4 C -0.218 4.218 5 C 0.284 3.716 6 O -0.357 6.357 7 C -0.226 4.226 8 C -0.106 4.106 9 C 0.028 3.972 10 O -0.253 6.253 11 C 0.136 3.864 12 C -0.597 4.597 13 H 0.081 0.919 14 C -0.185 4.185 15 N -0.560 5.560 16 Si 0.808 3.192 17 H -0.191 1.191 18 H -0.194 1.194 19 H -0.194 1.194 20 C -0.163 4.163 21 C -0.132 4.132 22 C 0.100 3.900 23 O -0.217 6.217 24 H 0.119 0.881 25 H 0.101 0.899 26 H 0.053 0.947 27 H 0.095 0.905 28 H 0.095 0.905 29 H 0.125 0.875 30 H 0.154 0.846 31 H 0.149 0.851 32 H 0.146 0.854 33 H 0.025 0.975 34 H 0.026 0.974 35 H 0.084 0.916 36 H 0.153 0.847 37 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 1.899 21.160 8.846 23.013 hybrid contribution -0.258 -1.490 -0.435 1.574 sum 1.640 19.670 8.411 21.456 Atomic orbital electron populations 1.22545 0.94151 1.02112 1.05371 1.22279 0.94367 0.94295 0.81375 1.21855 1.02873 0.89128 1.04999 1.23196 1.05208 0.91477 1.01911 1.22956 0.72603 0.90357 0.85693 1.90537 1.37560 1.68292 1.39345 1.20477 1.12410 0.93665 0.96018 1.20336 1.00888 0.93966 0.95381 1.19318 0.98920 0.84380 0.94541 1.86089 1.86089 1.18914 1.34224 1.20263 0.95449 0.93928 0.76809 1.21334 1.51667 0.92202 0.94487 0.91892 1.25900 0.93728 1.04880 0.94020 1.70035 1.48750 1.38619 0.98628 0.85096 0.78463 0.76935 0.78694 1.19089 1.19393 1.19385 1.21529 1.01632 0.94588 0.98540 1.20584 1.02826 0.93252 0.96552 1.18821 0.95723 0.83273 0.92145 1.85815 1.74927 1.16506 1.44465 0.88131 0.89925 0.94733 0.90486 0.90463 0.87475 0.84604 0.85067 0.85365 0.97487 0.97417 0.91639 0.84685 0.81595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.96 8.30 71.98 0.60 -2.37 16 2 C 0.11 1.79 1.11 -10.60 -0.01 1.78 16 3 C -0.13 -1.07 8.85 71.98 0.64 -0.44 16 4 C -0.18 -2.98 5.28 30.41 0.16 -2.82 16 5 C 0.40 11.23 5.89 28.46 0.17 11.40 16 6 O -0.48 -16.30 17.42 -3.10 -0.05 -16.35 16 7 C -0.22 -7.18 5.26 -20.02 -0.11 -7.29 16 8 C -0.09 -3.36 9.58 22.59 0.22 -3.15 16 9 C 0.07 3.21 6.68 22.47 0.15 3.36 16 10 O -0.34 -17.53 10.12 -93.32 -0.94 -18.48 16 11 C 0.21 11.59 4.49 71.23 0.32 11.91 16 12 C -0.56 -33.08 9.43 25.60 0.24 -32.84 16 13 H 0.06 3.72 7.81 -2.91 -0.02 3.70 16 14 C 0.01 0.82 5.46 84.66 0.46 1.28 16 15 N -0.92 -53.57 13.29 21.45 0.28 -53.29 16 16 Si 0.99 43.70 29.54 68.60 2.03 45.72 16 17 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 18 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 19 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 20 C -0.14 -5.43 9.02 22.40 0.20 -5.23 16 21 C -0.11 -3.41 9.97 22.35 0.22 -3.19 16 22 C 0.15 4.19 6.01 22.96 0.14 4.32 16 23 O -0.30 -6.74 9.63 -87.18 -0.84 -7.58 16 24 H 0.10 1.10 8.14 -2.39 -0.02 1.09 16 25 H 0.08 1.19 8.14 -2.39 -0.02 1.18 16 26 H 0.03 0.77 6.42 -2.39 -0.02 0.75 16 27 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 28 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.11 0.35 8.14 -2.38 -0.02 0.33 16 30 H 0.14 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.13 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.13 5.11 7.81 -2.91 -0.02 5.08 16 33 H 0.01 0.42 7.65 -2.39 -0.02 0.40 16 34 H 0.01 0.46 7.66 -2.39 -0.02 0.44 16 35 H 0.27 14.69 8.31 -92.71 -0.77 13.92 16 36 H 0.14 5.32 6.26 -2.91 -0.02 5.30 16 37 H 0.17 3.91 8.06 -2.91 -0.02 3.88 16 Total: -1.00 -69.93 313.62 4.95 -64.98 By element: Atomic # 1 Polarization: 7.17 SS G_CDS: 1.08 Total: 8.25 kcal Atomic # 6 Polarization: -26.65 SS G_CDS: 3.40 Total: -23.25 kcal Atomic # 7 Polarization: -53.57 SS G_CDS: 0.28 Total: -53.29 kcal Atomic # 8 Polarization: -40.57 SS G_CDS: -1.84 Total: -42.41 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.72 kcal Total: -69.93 4.95 -64.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280393212.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.879 kcal (2) G-P(sol) polarization free energy of solvation -69.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds