Wall clock time and date at job start Mon Mar 30 2020 01:30:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46497 * 109.46926 * 2 1 4 4 C 1.46493 * 120.00235 * 90.00466 * 3 2 1 5 5 C 1.50706 * 109.47128 * 269.99530 * 4 3 2 6 6 H 1.08000 * 119.99302 * 359.97438 * 5 4 3 7 7 C 1.37871 * 120.00436 * 179.72498 * 5 4 3 8 8 N 1.31515 * 119.99684 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00405 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47050 * 59.99579 * 9 7 5 11 11 H 1.48496 * 109.47289 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.46492 * 299.99554 * 9 7 5 13 13 C 1.38009 * 119.99917 * 269.99618 * 3 2 1 14 14 N 1.28897 * 124.81788 * 180.02562 * 13 3 2 15 15 C 1.34812 * 117.87617 * 179.97438 * 14 13 3 16 16 C 1.41101 * 128.73153 * 180.02562 * 15 14 13 17 17 C 1.37200 * 120.43143 * 179.97438 * 16 15 14 18 18 C 1.38719 * 120.59864 * 0.02778 * 17 16 15 19 19 C 1.37718 * 119.97493 * 359.97438 * 18 17 16 20 20 C 1.50699 * 119.89501 * 180.02562 * 19 18 17 21 21 C 1.39253 * 120.20561 * 359.97438 * 19 18 17 22 22 S 1.75804 * 124.81483 * 359.72897 * 13 3 2 23 23 H 1.08997 * 109.46846 * 60.00212 * 1 2 3 24 24 H 1.08993 * 109.47111 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.46792 * 300.00225 * 1 2 3 26 26 H 1.08998 * 109.46792 * 239.99775 * 2 1 3 27 27 H 1.08997 * 109.46846 * 119.99788 * 2 1 3 28 28 H 1.09001 * 109.47786 * 149.99803 * 4 3 2 29 29 H 1.08998 * 109.47558 * 29.99666 * 4 3 2 30 30 H 0.97004 * 120.00247 * 180.02562 * 8 7 5 31 31 H 1.07999 * 119.78289 * 359.96042 * 16 15 14 32 32 H 1.08002 * 119.70178 * 179.97438 * 17 16 15 33 33 H 1.08002 * 120.00852 * 180.02562 * 18 17 16 34 34 H 1.08998 * 109.47217 * 89.99964 * 20 19 18 35 35 H 1.09001 * 109.47328 * 209.99879 * 20 19 18 36 36 H 1.09004 * 109.47099 * 330.00039 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0718 1.2686 5 6 1.0068 2.7823 1.7037 6 1 0.1160 2.7254 1.0957 7 6 0.9935 3.5006 2.8805 8 7 2.0767 3.5654 3.6235 9 14 -0.5633 4.3807 3.4201 10 1 -1.6572 3.3912 3.5915 11 1 -0.3179 5.0748 4.7097 12 1 -0.9526 5.3753 2.3883 13 6 2.2484 2.0318 -1.1952 14 7 2.6770 3.2426 -1.3035 15 6 2.8535 3.7402 -2.5439 16 6 3.3073 5.0207 -2.9251 17 6 3.4247 5.3499 -4.2519 18 6 3.0991 4.4311 -5.2388 19 6 2.6540 3.1753 -4.8901 20 6 2.3015 2.1784 -5.9638 21 6 2.5298 2.8236 -3.5484 22 16 2.0056 1.3241 -2.7861 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 3.0645 2.7985 1.1384 29 1 2.5507 1.3452 2.0283 30 1 2.0673 4.0705 4.4516 31 1 3.5637 5.7465 -2.1676 32 1 3.7728 6.3336 -4.5304 33 1 3.1955 4.7002 -6.2803 34 1 3.1851 1.5948 -6.2221 35 1 1.5201 1.5120 -5.5984 36 1 1.9442 2.7072 -6.8474 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000280711714.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:33 Heat of formation + Delta-G solvation = 50.830617 kcal Electronic energy + Delta-G solvation = -18762.520169 eV Core-core repulsion = 15951.744446 eV Total energy + Delta-G solvation = -2810.775722 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 276.099 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.70248 -37.66870 -35.51108 -32.76950 -32.39929 -30.56166 -28.75425 -27.13047 -26.80214 -24.00974 -23.03888 -22.27293 -20.82534 -19.61772 -17.57997 -16.62419 -16.32064 -15.96082 -15.01227 -14.69373 -14.48658 -14.12030 -13.92968 -13.56979 -13.11792 -12.94876 -12.69955 -12.48810 -12.20050 -11.90743 -11.66725 -11.50835 -11.31374 -11.22424 -11.02489 -10.78372 -10.59725 -10.41810 -10.08007 -9.76025 -9.49071 -8.82098 -8.75085 -8.47374 -7.67017 -6.89809 -6.07247 -4.13716 1.16246 1.49818 1.56185 2.15637 3.02081 3.29105 3.33815 3.36989 3.54327 4.18479 4.39899 4.86947 4.96986 5.09658 5.25070 5.28477 5.40275 5.51816 5.59326 5.59630 5.70275 5.72898 5.84515 5.94371 6.00991 6.23135 6.33862 6.56896 6.59383 6.68337 6.74218 6.82397 7.09401 7.30897 7.63774 7.83217 7.96822 8.14657 8.61392 8.89126 9.50530 10.98725 Molecular weight = 276.10amu Principal moments of inertia in cm(-1) A = 0.019875 B = 0.005785 C = 0.004919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1408.490228 B = 4839.330522 C = 5690.710586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.120 3.880 3 N -0.550 5.550 4 C 0.256 3.744 5 C -0.524 4.524 6 H 0.059 0.941 7 C 0.064 3.936 8 N -0.894 5.894 9 Si 0.897 3.103 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.276 1.276 13 C 0.414 3.586 14 N -0.547 5.547 15 C 0.159 3.841 16 C -0.105 4.105 17 C -0.094 4.094 18 C -0.149 4.149 19 C -0.025 4.025 20 C -0.114 4.114 21 C -0.206 4.206 22 S -0.017 6.017 23 H 0.052 0.948 24 H 0.058 0.942 25 H 0.078 0.922 26 H 0.062 0.938 27 H 0.087 0.913 28 H 0.050 0.950 29 H 0.037 0.963 30 H 0.264 0.736 31 H 0.128 0.872 32 H 0.125 0.875 33 H 0.123 0.877 34 H 0.071 0.929 35 H 0.063 0.937 36 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.821 -4.366 -14.959 15.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.003 4.003 3 N -0.263 5.263 4 C 0.135 3.865 5 C -0.563 4.563 6 H 0.077 0.923 7 C -0.138 4.138 8 N -0.533 5.533 9 Si 0.724 3.276 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.202 1.202 13 C 0.038 3.962 14 N -0.273 5.273 15 C 0.037 3.963 16 C -0.126 4.126 17 C -0.115 4.115 18 C -0.171 4.171 19 C -0.030 4.030 20 C -0.171 4.171 21 C -0.325 4.325 22 S 0.231 5.769 23 H 0.071 0.929 24 H 0.077 0.923 25 H 0.097 0.903 26 H 0.081 0.919 27 H 0.105 0.895 28 H 0.068 0.932 29 H 0.055 0.945 30 H 0.074 0.926 31 H 0.146 0.854 32 H 0.143 0.857 33 H 0.141 0.859 34 H 0.089 0.911 35 H 0.082 0.918 36 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 0.610 -5.165 -14.360 15.272 hybrid contribution -0.634 1.408 0.323 1.578 sum -0.024 -3.757 -14.037 14.531 Atomic orbital electron populations 1.22252 0.95622 1.01406 1.03785 1.21520 0.95119 0.81500 1.02186 1.46942 1.64149 1.12278 1.02969 1.19523 0.97899 0.92515 0.76551 1.21360 0.97341 1.31485 1.06132 0.92312 1.24894 0.96463 0.96150 0.96321 1.69913 1.27560 1.41660 1.14147 0.86579 0.83198 0.79945 0.77846 1.20254 1.21152 1.20197 1.23946 0.92696 0.89578 0.90024 1.66374 1.28373 1.10640 1.21940 1.19013 0.96923 0.94920 0.85429 1.20562 1.01953 0.93956 0.96175 1.20762 0.99450 0.99234 0.92070 1.20678 1.04277 0.93085 0.99056 1.18963 0.98078 0.95214 0.90775 1.20832 1.01667 0.97767 0.96857 1.23142 1.14179 0.97246 0.97966 1.84503 1.74325 1.15943 1.02131 0.92881 0.92264 0.90254 0.91943 0.89459 0.93227 0.94499 0.92603 0.85374 0.85702 0.85886 0.91058 0.91754 0.91271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.71 10.24 37.16 0.38 -2.33 16 2 C 0.12 1.99 6.15 -4.04 -0.02 1.96 16 3 N -0.55 -11.63 2.54 -176.27 -0.45 -12.08 16 4 C 0.26 6.44 5.31 -5.19 -0.03 6.41 16 5 C -0.52 -14.30 8.92 -34.44 -0.31 -14.61 16 6 H 0.06 1.62 7.42 -52.49 -0.39 1.23 16 7 C 0.06 1.78 5.46 -17.82 -0.10 1.69 16 8 N -0.89 -25.89 13.29 55.43 0.74 -25.16 16 9 Si 0.90 21.59 29.54 -169.99 -5.02 16.57 16 10 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 11 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 13 C 0.41 8.80 7.87 -88.90 -0.70 8.10 16 14 N -0.55 -12.65 9.79 -11.16 -0.11 -12.76 16 15 C 0.16 3.22 6.94 -84.89 -0.59 2.63 16 16 C -0.10 -1.80 10.10 -38.87 -0.39 -2.20 16 17 C -0.09 -1.30 9.99 -39.78 -0.40 -1.69 16 18 C -0.15 -1.96 9.69 -39.59 -0.38 -2.34 16 19 C -0.03 -0.37 5.89 -104.44 -0.62 -0.99 16 20 C -0.11 -1.28 9.89 36.00 0.36 -0.93 16 21 C -0.21 -3.68 6.31 -38.63 -0.24 -3.92 16 22 S -0.02 -0.30 21.27 -107.50 -2.29 -2.58 16 23 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 24 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.08 1.45 7.26 -51.93 -0.38 1.07 16 26 H 0.06 0.90 7.03 -51.93 -0.37 0.53 16 27 H 0.09 1.34 7.89 -51.93 -0.41 0.93 16 28 H 0.05 1.40 7.60 -51.93 -0.39 1.00 16 29 H 0.04 0.94 7.89 -51.93 -0.41 0.53 16 30 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 31 H 0.13 2.13 8.06 -52.49 -0.42 1.71 16 32 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 33 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.06 0.74 7.65 -51.93 -0.40 0.35 16 36 H 0.07 0.63 8.08 -51.93 -0.42 0.21 16 LS Contribution 318.27 15.07 4.80 4.80 Total: -1.00 -30.78 318.27 -10.21 -40.99 By element: Atomic # 1 Polarization: 3.28 SS G_CDS: -4.83 Total: -1.56 kcal Atomic # 6 Polarization: -5.18 SS G_CDS: -3.04 Total: -8.22 kcal Atomic # 7 Polarization: -50.17 SS G_CDS: 0.18 Total: -49.99 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Atomic # 16 Polarization: -0.30 SS G_CDS: -2.29 Total: -2.58 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -30.78 -10.21 -40.99 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280711714.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.820 kcal (2) G-P(sol) polarization free energy of solvation -30.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.990 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds