Wall clock time and date at job start Mon Mar 30 2020 01:30:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46497 * 109.46926 * 2 1 4 4 C 1.46493 * 120.00235 * 90.00466 * 3 2 1 5 5 C 1.50706 * 109.47128 * 269.99530 * 4 3 2 6 6 H 1.08000 * 119.99302 * 359.97438 * 5 4 3 7 7 C 1.37871 * 120.00436 * 179.72498 * 5 4 3 8 8 N 1.31515 * 119.99684 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00405 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47050 * 59.99579 * 9 7 5 11 11 H 1.48496 * 109.47289 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.46492 * 299.99554 * 9 7 5 13 13 C 1.38009 * 119.99917 * 269.99618 * 3 2 1 14 14 N 1.28897 * 124.81788 * 180.02562 * 13 3 2 15 15 C 1.34812 * 117.87617 * 179.97438 * 14 13 3 16 16 C 1.41101 * 128.73153 * 180.02562 * 15 14 13 17 17 C 1.37200 * 120.43143 * 179.97438 * 16 15 14 18 18 C 1.38719 * 120.59864 * 0.02778 * 17 16 15 19 19 C 1.37718 * 119.97493 * 359.97438 * 18 17 16 20 20 C 1.50699 * 119.89501 * 180.02562 * 19 18 17 21 21 C 1.39253 * 120.20561 * 359.97438 * 19 18 17 22 22 S 1.75804 * 124.81483 * 359.72897 * 13 3 2 23 23 H 1.08997 * 109.46846 * 60.00212 * 1 2 3 24 24 H 1.08993 * 109.47111 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.46792 * 300.00225 * 1 2 3 26 26 H 1.08998 * 109.46792 * 239.99775 * 2 1 3 27 27 H 1.08997 * 109.46846 * 119.99788 * 2 1 3 28 28 H 1.09001 * 109.47786 * 149.99803 * 4 3 2 29 29 H 1.08998 * 109.47558 * 29.99666 * 4 3 2 30 30 H 0.97004 * 120.00247 * 180.02562 * 8 7 5 31 31 H 1.07999 * 119.78289 * 359.96042 * 16 15 14 32 32 H 1.08002 * 119.70178 * 179.97438 * 17 16 15 33 33 H 1.08002 * 120.00852 * 180.02562 * 18 17 16 34 34 H 1.08998 * 109.47217 * 89.99964 * 20 19 18 35 35 H 1.09001 * 109.47328 * 209.99879 * 20 19 18 36 36 H 1.09004 * 109.47099 * 330.00039 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0718 1.2686 5 6 1.0068 2.7823 1.7037 6 1 0.1160 2.7254 1.0957 7 6 0.9935 3.5006 2.8805 8 7 2.0767 3.5654 3.6235 9 14 -0.5633 4.3807 3.4201 10 1 -1.6572 3.3912 3.5915 11 1 -0.3179 5.0748 4.7097 12 1 -0.9526 5.3753 2.3883 13 6 2.2484 2.0318 -1.1952 14 7 2.6770 3.2426 -1.3035 15 6 2.8535 3.7402 -2.5439 16 6 3.3073 5.0207 -2.9251 17 6 3.4247 5.3499 -4.2519 18 6 3.0991 4.4311 -5.2388 19 6 2.6540 3.1753 -4.8901 20 6 2.3015 2.1784 -5.9638 21 6 2.5298 2.8236 -3.5484 22 16 2.0056 1.3241 -2.7861 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 3.0645 2.7985 1.1384 29 1 2.5507 1.3452 2.0283 30 1 2.0673 4.0705 4.4516 31 1 3.5637 5.7465 -2.1676 32 1 3.7728 6.3336 -4.5304 33 1 3.1955 4.7002 -6.2803 34 1 3.1851 1.5948 -6.2221 35 1 1.5201 1.5120 -5.5984 36 1 1.9442 2.7072 -6.8474 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000280711714.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:33 Heat of formation + Delta-G solvation = 34.162421 kcal Electronic energy + Delta-G solvation = -18763.242956 eV Core-core repulsion = 15951.744446 eV Total energy + Delta-G solvation = -2811.498509 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 276.099 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.04477 -39.12033 -36.92299 -34.83484 -33.51032 -31.97605 -30.32810 -28.85388 -27.87470 -25.61190 -24.73004 -23.54809 -22.08001 -21.15295 -18.93924 -18.64827 -17.85800 -17.31354 -16.56611 -16.21978 -15.99394 -15.48045 -15.27623 -14.88237 -14.53639 -14.24099 -14.11377 -13.84738 -13.53078 -13.36320 -13.09558 -12.95128 -12.85277 -12.59415 -12.56844 -12.45325 -12.24666 -11.92065 -11.69703 -11.59934 -10.82013 -10.63251 -10.31688 -10.24774 -8.93691 -8.50126 -8.11374 -6.34183 -0.18749 0.11968 0.28734 0.77265 1.34701 1.37954 1.45164 1.66627 2.08062 2.38113 2.88041 3.08542 3.53571 3.81629 4.01490 4.08536 4.29989 4.32689 4.40481 4.43754 4.62528 4.72159 4.78145 4.80210 4.89023 4.94508 5.03191 5.17466 5.24038 5.34628 5.39478 5.45730 5.56822 5.64686 5.90079 6.03207 6.11254 6.25554 6.73642 7.16230 7.34369 8.85052 Molecular weight = 276.10amu Principal moments of inertia in cm(-1) A = 0.019875 B = 0.005785 C = 0.004919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1408.490228 B = 4839.330522 C = 5690.710586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.115 3.885 3 N -0.564 5.564 4 C 0.276 3.724 5 C -0.529 4.529 6 H 0.050 0.950 7 C 0.013 3.987 8 N -0.927 5.927 9 Si 0.959 3.041 10 H -0.262 1.262 11 H -0.278 1.278 12 H -0.282 1.282 13 C 0.380 3.620 14 N -0.598 5.598 15 C 0.111 3.889 16 C -0.131 4.131 17 C -0.080 4.080 18 C -0.133 4.133 19 C -0.032 4.032 20 C -0.112 4.112 21 C -0.225 4.225 22 S 0.046 5.954 23 H 0.045 0.955 24 H 0.098 0.902 25 H 0.048 0.952 26 H 0.087 0.913 27 H 0.095 0.905 28 H 0.007 0.993 29 H 0.027 0.973 30 H 0.266 0.734 31 H 0.118 0.882 32 H 0.164 0.836 33 H 0.170 0.830 34 H 0.086 0.914 35 H 0.058 0.942 36 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.039 -4.661 -18.298 18.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.007 4.007 3 N -0.279 5.279 4 C 0.153 3.847 5 C -0.568 4.568 6 H 0.068 0.932 7 C -0.186 4.186 8 N -0.567 5.567 9 Si 0.784 3.216 10 H -0.187 1.187 11 H -0.203 1.203 12 H -0.208 1.208 13 C 0.004 3.996 14 N -0.325 5.325 15 C -0.009 4.009 16 C -0.153 4.153 17 C -0.100 4.100 18 C -0.154 4.154 19 C -0.037 4.037 20 C -0.169 4.169 21 C -0.345 4.345 22 S 0.294 5.706 23 H 0.064 0.936 24 H 0.116 0.884 25 H 0.067 0.933 26 H 0.105 0.895 27 H 0.113 0.887 28 H 0.026 0.974 29 H 0.045 0.955 30 H 0.075 0.925 31 H 0.136 0.864 32 H 0.181 0.819 33 H 0.187 0.813 34 H 0.104 0.896 35 H 0.077 0.923 36 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -0.254 -5.473 -17.746 18.573 hybrid contribution -0.284 1.572 1.120 1.951 sum -0.538 -3.902 -16.626 17.087 Atomic orbital electron populations 1.22173 0.94948 1.03265 1.01800 1.21788 0.95649 0.79466 1.03768 1.46787 1.65637 1.13591 1.01872 1.18894 0.95773 0.91496 0.78497 1.21568 0.97659 1.31569 1.06009 0.93169 1.25714 0.99482 0.96907 0.96477 1.70028 1.29457 1.42589 1.14590 0.85594 0.79843 0.78816 0.77313 1.18709 1.20302 1.20770 1.24186 0.93568 0.90176 0.91637 1.66334 1.29043 1.12391 1.24759 1.19351 0.99595 0.96697 0.85224 1.20797 1.03383 0.93195 0.97944 1.21228 0.97309 1.01027 0.90465 1.21276 1.01270 0.91794 1.01062 1.19536 0.97222 0.96792 0.90150 1.20916 1.02189 0.97238 0.96572 1.23544 1.14612 0.97204 0.99130 1.83981 1.73594 1.14824 0.98160 0.93628 0.88379 0.93325 0.89454 0.88677 0.97440 0.95483 0.92477 0.86430 0.81888 0.81273 0.89558 0.92348 0.88295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.08 10.24 71.98 0.74 -4.34 16 2 C 0.12 3.82 6.15 86.38 0.53 4.35 16 3 N -0.56 -24.97 2.54 -711.61 -1.81 -26.78 16 4 C 0.28 14.84 5.31 85.64 0.46 15.29 16 5 C -0.53 -30.24 8.92 25.60 0.23 -30.01 16 6 H 0.05 2.89 7.42 -2.91 -0.02 2.87 16 7 C 0.01 0.76 5.46 84.65 0.46 1.23 16 8 N -0.93 -55.74 13.29 21.45 0.28 -55.46 16 9 Si 0.96 45.32 29.54 68.60 2.03 47.35 16 10 H -0.26 -11.70 7.11 99.48 0.71 -11.00 16 11 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 12 H -0.28 -13.47 7.11 99.48 0.71 -12.76 16 13 C 0.38 16.83 7.87 179.75 1.41 18.24 16 14 N -0.60 -29.33 9.79 -189.22 -1.85 -31.19 16 15 C 0.11 4.64 6.94 39.76 0.28 4.92 16 16 C -0.13 -4.59 10.10 22.73 0.23 -4.36 16 17 C -0.08 -1.98 9.99 22.14 0.22 -1.76 16 18 C -0.13 -2.90 9.69 22.26 0.22 -2.69 16 19 C -0.03 -0.84 5.89 -19.74 -0.12 -0.95 16 20 C -0.11 -2.04 9.89 71.24 0.70 -1.34 16 21 C -0.23 -7.90 6.31 22.89 0.14 -7.75 16 22 S 0.05 1.55 21.27 -56.49 -1.20 0.35 16 23 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 24 H 0.10 2.24 8.14 -2.39 -0.02 2.22 16 25 H 0.05 1.80 7.26 -2.39 -0.02 1.79 16 26 H 0.09 2.42 7.03 -2.39 -0.02 2.41 16 27 H 0.09 2.95 7.89 -2.39 -0.02 2.93 16 28 H 0.01 0.46 7.60 -2.39 -0.02 0.44 16 29 H 0.03 1.48 7.89 -2.39 -0.02 1.46 16 30 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 31 H 0.12 4.17 8.06 -2.91 -0.02 4.14 16 32 H 0.16 2.74 8.06 -2.91 -0.02 2.71 16 33 H 0.17 2.20 8.06 -2.91 -0.02 2.17 16 34 H 0.09 1.35 8.14 -2.39 -0.02 1.34 16 35 H 0.06 1.14 7.65 -2.39 -0.02 1.12 16 36 H 0.10 1.24 8.08 -2.39 -0.02 1.22 16 Total: -1.00 -72.02 318.27 4.02 -68.00 By element: Atomic # 1 Polarization: 5.82 SS G_CDS: 1.07 Total: 6.89 kcal Atomic # 6 Polarization: -14.67 SS G_CDS: 5.50 Total: -9.17 kcal Atomic # 7 Polarization: -110.05 SS G_CDS: -3.38 Total: -113.42 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.35 kcal Atomic # 16 Polarization: 1.55 SS G_CDS: -1.20 Total: 0.35 kcal Total: -72.02 4.02 -68.00 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280711714.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.164 kcal (2) G-P(sol) polarization free energy of solvation -72.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.002 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds