Wall clock time and date at job start Mon Mar 30 2020 01:33:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.28715 * 126.03145 * 2 1 4 4 N 1.28518 * 110.64094 * 179.97438 * 3 2 1 5 5 C 1.33318 * 109.44026 * 359.76795 * 4 3 2 6 6 C 1.37027 * 106.36797 * 0.36715 * 5 4 3 7 7 C 1.47201 * 127.18648 * 179.90744 * 6 5 4 8 8 O 1.21639 * 119.99778 * 185.00096 * 7 6 5 9 9 N 1.34778 * 120.00480 * 4.99975 * 7 6 5 10 10 C 1.40073 * 119.99822 * 174.78946 * 9 7 6 11 11 C 1.40425 * 125.97831 * 0.02562 * 10 9 7 12 12 C 1.35240 * 107.86608 * 179.73278 * 11 10 9 13 13 N 1.34974 * 107.86414 * 0.37053 * 12 11 10 14 14 C 1.46495 * 125.97411 * 179.89453 * 13 12 11 15 15 C 1.50702 * 109.47398 * 124.71200 * 14 13 12 16 16 H 1.08000 * 119.99748 * 359.97438 * 15 14 13 17 17 C 1.37880 * 120.00327 * 180.02562 * 15 14 13 18 18 N 1.31517 * 119.99842 * 359.72431 * 17 15 14 19 19 Si 1.86797 * 120.00143 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47441 * 179.72354 * 19 17 15 21 21 H 1.48505 * 109.47033 * 299.72589 * 19 17 15 22 22 H 1.48501 * 109.46886 * 59.72155 * 19 17 15 23 23 N 1.31240 * 125.97339 * 179.97438 * 10 9 7 24 24 H 1.09000 * 109.46570 * 274.87211 * 1 2 3 25 25 H 1.09000 * 109.47097 * 34.87112 * 1 2 3 26 26 H 1.09001 * 109.46650 * 154.87393 * 1 2 3 27 27 H 1.07997 * 126.81643 * 180.28126 * 5 4 3 28 28 H 0.96993 * 119.99551 * 354.79130 * 9 7 6 29 29 H 1.07992 * 126.06842 * 359.96583 * 11 10 9 30 30 H 1.08000 * 126.06606 * 180.22533 * 12 11 10 31 31 H 1.09000 * 109.47109 * 4.71550 * 14 13 12 32 32 H 1.09000 * 109.47695 * 244.71281 * 14 13 12 33 33 H 0.97004 * 119.99682 * 0.27887 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2222 1.0409 0.0000 4 7 3.4612 0.6998 0.0005 5 6 3.5554 -0.6300 0.0060 6 6 2.2712 -1.1081 0.0005 7 6 1.8466 -2.5175 0.0014 8 8 0.6668 -2.7972 -0.0958 9 7 2.7649 -3.4980 0.1100 10 6 2.3545 -4.8327 0.2208 11 6 1.0266 -5.2893 0.2317 12 6 1.0520 -6.6365 0.3475 13 7 2.3437 -7.0219 0.4162 14 6 2.8250 -8.3991 0.5494 15 6 3.7855 -8.7062 -0.5706 16 1 4.0142 -7.9511 -1.3081 17 6 4.3714 -9.9515 -0.6544 18 7 4.0963 -10.8696 0.2462 19 14 5.5614 -10.3323 -2.0430 20 1 6.0540 -11.7263 -1.9045 21 1 4.8661 -10.1801 -3.3464 22 1 6.7100 -9.3930 -1.9821 23 7 3.1439 -5.8753 0.3316 24 1 -0.3632 0.0873 1.0240 25 1 -0.3633 0.8431 -0.5875 26 1 -0.3633 -0.9305 -0.4364 27 1 4.4635 -1.2145 0.0120 28 1 3.7098 -3.2794 0.1114 29 1 0.1421 -4.6742 0.1568 30 1 0.1914 -7.2881 0.3816 31 1 1.9797 -9.0856 0.5014 32 1 3.3337 -8.5154 1.5063 33 1 3.4780 -10.6719 0.9671 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000282573686.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:23 Heat of formation + Delta-G solvation = 127.465045 kcal Electronic energy + Delta-G solvation = -20157.528645 eV Core-core repulsion = 16836.075578 eV Total energy + Delta-G solvation = -3321.453067 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 276.108 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -44.47691 -42.33157 -40.60530 -36.68388 -35.85126 -35.42487 -33.27407 -32.12344 -31.05135 -29.10360 -28.26035 -25.91807 -24.79195 -23.75889 -22.75320 -21.85863 -21.17237 -19.30558 -19.14244 -18.16331 -17.97515 -17.79935 -16.95596 -16.55875 -15.96265 -15.78144 -15.55774 -15.33844 -15.04500 -14.27540 -14.17340 -13.98945 -13.93623 -13.67090 -13.29991 -13.18713 -12.61073 -12.28093 -12.13087 -11.94768 -11.72660 -11.34355 -11.23195 -11.01730 -10.72609 -10.68055 -9.88227 -9.25967 -8.76761 -6.54783 -0.35071 0.75933 0.92370 1.16194 1.42207 1.53147 1.58825 1.59460 1.80426 2.15436 2.18510 2.50076 3.02629 3.07868 3.28643 3.64048 3.82907 3.92787 4.12890 4.22806 4.50951 4.51728 4.60325 4.69204 4.77678 4.80193 4.86014 5.01975 5.23315 5.55592 5.73943 5.91140 6.01909 6.26815 6.41815 6.66963 6.91409 7.14408 7.20771 8.60189 Molecular weight = 276.11amu Principal moments of inertia in cm(-1) A = 0.032540 B = 0.003493 C = 0.003251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.285340 B = 8015.021170 C = 8611.267705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.245 5.245 3 N -0.069 5.069 4 N -0.299 5.299 5 C 0.019 3.981 6 C -0.077 4.077 7 C 0.614 3.386 8 O -0.527 6.527 9 N -0.605 5.605 10 C 0.269 3.731 11 C -0.286 4.286 12 C 0.057 3.943 13 N -0.341 5.341 14 C 0.259 3.741 15 C -0.622 4.622 16 H 0.047 0.953 17 C -0.018 4.018 18 N -0.924 5.924 19 Si 1.118 2.882 20 H -0.277 1.277 21 H -0.271 1.271 22 H -0.274 1.274 23 N -0.338 5.338 24 H 0.114 0.886 25 H 0.126 0.874 26 H 0.116 0.884 27 H 0.233 0.767 28 H 0.429 0.571 29 H 0.176 0.824 30 H 0.203 0.797 31 H 0.055 0.945 32 H 0.018 0.982 33 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.473 18.516 -0.269 19.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.043 5.043 3 N -0.050 5.050 4 N -0.161 5.161 5 C -0.143 4.143 6 C -0.212 4.212 7 C 0.400 3.600 8 O -0.402 6.402 9 N -0.254 5.254 10 C 0.014 3.986 11 C -0.316 4.316 12 C -0.091 4.091 13 N -0.123 5.123 14 C 0.139 3.861 15 C -0.660 4.660 16 H 0.065 0.935 17 C -0.218 4.218 18 N -0.561 5.561 19 Si 0.939 3.061 20 H -0.202 1.202 21 H -0.196 1.196 22 H -0.200 1.200 23 N -0.169 5.169 24 H 0.132 0.868 25 H 0.145 0.855 26 H 0.134 0.866 27 H 0.249 0.751 28 H 0.268 0.732 29 H 0.193 0.807 30 H 0.220 0.780 31 H 0.073 0.927 32 H 0.036 0.964 33 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -6.137 18.199 -0.856 19.225 hybrid contribution -1.457 0.212 0.854 1.702 sum -7.595 18.411 -0.002 19.916 Atomic orbital electron populations 1.22979 0.69338 1.08114 1.07281 1.47967 1.11068 1.02664 1.42636 1.78260 0.97029 1.11841 1.17893 1.74919 1.09395 1.13532 1.18224 1.24559 0.97578 0.91495 1.00647 1.21424 0.92187 0.89482 1.18083 1.16532 0.84884 0.82554 0.76073 1.90720 1.17294 1.83127 1.49076 1.41877 1.11368 1.01033 1.71111 1.19218 0.92785 0.84869 1.01734 1.21741 0.96952 0.93612 1.19342 1.23227 0.88696 0.96738 1.00460 1.48596 1.03886 1.06015 1.53773 1.19438 0.96091 0.73280 0.97243 1.22301 1.29675 1.01338 1.12685 0.93453 1.27230 0.99774 0.91920 1.02872 1.70953 1.34689 1.36333 1.14079 0.82892 0.74283 0.76435 0.72459 1.20208 1.19649 1.19991 1.77305 1.18969 0.91124 1.29494 0.86806 0.85549 0.86564 0.75094 0.73212 0.80669 0.78017 0.92704 0.96432 0.92899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.72 11.10 127.77 1.42 2.14 16 2 N -0.25 -4.72 3.79 -356.78 -1.35 -6.07 16 3 N -0.07 -1.57 13.14 37.02 0.49 -1.08 16 4 N -0.30 -6.98 12.35 -57.49 -0.71 -7.69 16 5 C 0.02 0.34 11.55 84.18 0.97 1.32 16 6 C -0.08 -1.57 6.98 40.40 0.28 -1.29 16 7 C 0.61 14.70 7.76 86.60 0.67 15.38 16 8 O -0.53 -14.32 11.89 -4.15 -0.05 -14.37 16 9 N -0.60 -15.72 5.44 -310.67 -1.69 -17.41 16 10 C 0.27 9.56 8.10 133.35 1.08 10.64 16 11 C -0.29 -9.77 9.61 22.11 0.21 -9.56 16 12 C 0.06 2.02 11.44 83.52 0.96 2.98 16 13 N -0.34 -14.98 3.67 -351.85 -1.29 -16.27 16 14 C 0.26 12.72 5.57 85.63 0.48 13.20 16 15 C -0.62 -34.21 9.24 25.60 0.24 -33.98 16 16 H 0.05 2.72 7.81 -2.91 -0.02 2.69 16 17 C -0.02 -0.99 5.46 84.65 0.46 -0.53 16 18 N -0.92 -52.91 13.65 21.45 0.29 -52.61 16 19 Si 1.12 48.46 29.90 68.60 2.05 50.51 16 20 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 21 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 22 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 23 N -0.34 -14.62 12.42 -54.48 -0.68 -15.29 16 24 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 25 H 0.13 0.87 8.14 -2.39 -0.02 0.85 16 26 H 0.12 1.56 6.11 -2.39 -0.01 1.55 16 27 H 0.23 2.41 7.56 -2.91 -0.02 2.39 16 28 H 0.43 8.61 7.85 -92.71 -0.73 7.88 16 29 H 0.18 5.48 5.92 -2.91 -0.02 5.47 16 30 H 0.20 5.53 8.06 -2.91 -0.02 5.50 16 31 H 0.06 2.58 7.94 -2.39 -0.02 2.56 16 32 H 0.02 0.92 8.00 -2.39 -0.02 0.90 16 33 H 0.26 14.73 7.22 -92.71 -0.67 14.07 16 Total: -1.00 -71.66 297.14 4.38 -67.28 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: 0.55 Total: 12.73 kcal Atomic # 6 Polarization: -6.48 SS G_CDS: 6.77 Total: 0.29 kcal Atomic # 7 Polarization: -111.50 SS G_CDS: -4.94 Total: -116.44 kcal Atomic # 8 Polarization: -14.32 SS G_CDS: -0.05 Total: -14.37 kcal Atomic # 14 Polarization: 48.46 SS G_CDS: 2.05 Total: 50.51 kcal Total: -71.66 4.38 -67.28 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282573686.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 194.746 kcal (2) G-P(sol) polarization free energy of solvation -71.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.281 kcal (6) G-S(sol) free energy of system = (1) + (5) 127.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds