Wall clock time and date at job start Mon Mar 30 2020 01:33:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34827 * 126.59803 * 2 1 4 4 C 1.36602 * 106.83951 * 180.13052 * 3 2 1 5 5 C 1.47497 * 125.77358 * 179.90481 * 4 3 2 6 6 O 1.21606 * 119.99842 * 359.70808 * 5 4 3 7 7 N 1.34783 * 120.00137 * 179.71826 * 5 4 3 8 8 C 1.40096 * 119.99652 * 179.97438 * 7 5 4 9 9 C 1.40421 * 125.98209 * 359.97088 * 8 7 5 10 10 C 1.35230 * 107.86833 * 179.75722 * 9 8 7 11 11 N 1.34966 * 107.86620 * 0.39274 * 10 9 8 12 12 C 1.46500 * 125.97782 * 179.86985 * 11 10 9 13 13 C 1.50706 * 109.47299 * 124.71059 * 12 11 10 14 14 H 1.07998 * 119.99503 * 0.02562 * 13 12 11 15 15 C 1.37871 * 120.00434 * 180.02562 * 13 12 11 16 16 N 1.31516 * 119.99826 * 359.72891 * 15 13 12 17 17 Si 1.86800 * 120.00406 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47364 * 179.72558 * 17 15 13 19 19 H 1.48508 * 109.46883 * 299.72681 * 17 15 13 20 20 H 1.48497 * 109.46870 * 59.72491 * 17 15 13 21 21 N 1.31237 * 125.97157 * 179.97438 * 8 7 5 22 22 N 1.34404 * 108.45262 * 359.63482 * 4 3 2 23 23 N 1.28760 * 109.52943 * 0.22506 * 22 4 3 24 24 H 1.09004 * 109.47068 * 270.24817 * 1 2 3 25 25 H 1.09005 * 109.47030 * 30.24569 * 1 2 3 26 26 H 1.08994 * 109.47205 * 150.24397 * 1 2 3 27 27 H 1.08005 * 126.58051 * 359.97438 * 3 2 1 28 28 H 0.96994 * 119.99585 * 359.97438 * 7 5 4 29 29 H 1.07998 * 126.06015 * 0.02562 * 9 8 7 30 30 H 1.08004 * 126.06817 * 180.25686 * 10 9 8 31 31 H 1.09004 * 109.47078 * 4.71821 * 12 11 10 32 32 H 1.08993 * 109.47364 * 244.71592 * 12 11 10 33 33 H 0.97000 * 120.00236 * 0.27947 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2688 1.0824 0.0000 4 6 3.5544 0.6207 -0.0030 5 6 4.7704 1.4554 -0.0061 6 8 4.6757 2.6678 -0.0114 7 7 5.9867 0.8745 -0.0031 8 6 7.1416 1.6675 -0.0066 9 6 7.1786 3.0712 -0.0137 10 6 8.4761 3.4521 -0.0095 11 7 9.2353 2.3362 -0.0090 12 6 10.6996 2.2914 -0.0076 13 6 11.1760 1.4672 1.1607 14 1 10.4595 1.0211 1.8345 15 6 12.5262 1.2828 1.3694 16 7 13.3985 1.8217 0.5457 17 14 13.1167 0.2606 2.8171 18 1 14.6008 0.2103 2.8151 19 1 12.6439 0.8762 4.0832 20 1 12.5746 -1.1172 2.7040 21 7 8.3783 1.2282 -0.0038 22 7 3.5238 -0.7230 0.0034 23 7 2.3008 -1.1257 0.0054 24 1 -0.3633 0.0045 1.0277 25 1 -0.3633 0.8878 -0.5177 26 1 -0.3633 -0.8921 -0.5100 27 1 1.9563 2.1163 -0.0004 28 1 6.0622 -0.0925 0.0014 29 1 6.3226 3.7296 -0.0171 30 1 8.8403 4.4689 -0.0092 31 1 11.0940 3.3040 0.0774 32 1 11.0502 1.8417 -0.9365 33 1 13.0920 2.3523 -0.2062 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000290209261.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:25 Heat of formation + Delta-G solvation = 148.860314 kcal Electronic energy + Delta-G solvation = -19839.660503 eV Core-core repulsion = 16519.135204 eV Total energy + Delta-G solvation = -3320.525299 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 276.108 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.49933 -40.67176 -39.06706 -35.11894 -34.76175 -33.62152 -31.48935 -30.68325 -29.38029 -28.31929 -26.33631 -24.31646 -22.88354 -22.55983 -21.45108 -20.46287 -19.62899 -18.11971 -17.16523 -16.70383 -16.60125 -16.24145 -15.35308 -15.07240 -14.90730 -14.43389 -14.05920 -13.76118 -13.64740 -13.60435 -13.16138 -12.45087 -12.41715 -12.22733 -11.81523 -11.58605 -11.13919 -10.79153 -10.74793 -10.46799 -10.16665 -10.13186 -9.75891 -9.61294 -8.97398 -8.55423 -8.19136 -7.51403 -6.55549 -4.29408 0.80462 1.41696 1.67379 2.63671 2.71828 3.06208 3.40631 3.43025 3.61071 3.69547 3.75188 3.94141 4.03938 4.43384 4.46510 4.48320 4.66027 4.77176 5.01740 5.18272 5.36123 5.53614 5.74276 5.95186 6.18410 6.40844 6.51526 6.59328 6.77320 7.32802 7.43377 7.63571 7.74858 7.84973 8.15480 8.37190 8.55950 8.64615 9.38689 10.82128 Molecular weight = 276.11amu Principal moments of inertia in cm(-1) A = 0.033388 B = 0.003267 C = 0.003048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.435381 B = 8569.779717 C = 9183.121904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.366 5.366 3 C 0.098 3.902 4 C -0.095 4.095 5 C 0.613 3.387 6 O -0.517 6.517 7 N -0.614 5.614 8 C 0.259 3.741 9 C -0.284 4.284 10 C 0.051 3.949 11 N -0.317 5.317 12 C 0.249 3.751 13 C -0.608 4.608 14 H 0.064 0.936 15 C 0.023 3.977 16 N -0.905 5.905 17 Si 1.077 2.923 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.285 1.285 21 N -0.297 5.297 22 N -0.201 5.201 23 N -0.063 5.063 24 H 0.090 0.910 25 H 0.099 0.901 26 H 0.101 0.899 27 H 0.208 0.792 28 H 0.420 0.580 29 H 0.162 0.838 30 H 0.169 0.831 31 H 0.047 0.953 32 H 0.035 0.965 33 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.797 0.354 -1.814 25.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.150 5.150 3 C -0.059 4.059 4 C -0.235 4.235 5 C 0.397 3.603 6 O -0.390 6.390 7 N -0.261 5.261 8 C 0.006 3.994 9 C -0.315 4.315 10 C -0.099 4.099 11 N -0.098 5.098 12 C 0.131 3.869 13 C -0.646 4.646 14 H 0.082 0.918 15 C -0.182 4.182 16 N -0.541 5.541 17 Si 0.904 3.096 18 H -0.205 1.205 19 H -0.212 1.212 20 H -0.211 1.211 21 N -0.128 5.128 22 N -0.076 5.076 23 N -0.044 5.044 24 H 0.109 0.891 25 H 0.117 0.883 26 H 0.120 0.880 27 H 0.225 0.775 28 H 0.256 0.744 29 H 0.180 0.820 30 H 0.186 0.814 31 H 0.064 0.936 32 H 0.053 0.947 33 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -23.621 -1.911 -1.066 23.722 hybrid contribution -2.102 1.856 -0.772 2.908 sum -25.723 -0.055 -1.839 25.789 Atomic orbital electron populations 1.22215 0.72368 1.05877 1.04881 1.50402 1.09225 1.05697 1.49702 1.23362 0.89903 0.95112 0.97556 1.21265 0.94226 0.90325 1.17679 1.16563 0.80936 0.86314 0.76533 1.90749 1.85989 1.12777 1.49522 1.42135 1.02322 1.10461 1.71155 1.19045 0.86345 0.90454 1.03591 1.21524 0.97060 0.93103 1.19835 1.22563 0.91254 0.93545 1.02537 1.48821 1.07555 1.01529 1.51914 1.19772 0.68947 0.98883 0.99313 1.22112 0.94980 1.35430 1.12079 0.91790 1.25922 0.92491 0.97551 1.02203 1.70853 1.36849 1.31552 1.14814 0.83422 0.76140 0.75808 0.74279 1.20549 1.21241 1.21081 1.77400 0.97354 1.10486 1.27529 1.74678 1.12962 1.10223 1.09695 1.82031 0.93375 1.06377 1.22614 0.89109 0.88277 0.88004 0.77490 0.74389 0.82038 0.81413 0.93572 0.94705 0.92291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.19 11.51 59.85 0.69 0.88 16 2 N -0.37 -2.84 4.03 -67.85 -0.27 -3.11 16 3 C 0.10 0.84 11.31 -16.83 -0.19 0.65 16 4 C -0.10 -1.19 6.99 -83.56 -0.58 -1.78 16 5 C 0.61 9.43 7.78 -12.48 -0.10 9.34 16 6 O -0.52 -8.67 13.99 5.27 0.07 -8.60 16 7 N -0.61 -10.55 5.44 -12.08 -0.07 -10.62 16 8 C 0.26 5.39 8.11 -154.43 -1.25 4.14 16 9 C -0.28 -5.64 9.60 -39.83 -0.38 -6.02 16 10 C 0.05 1.02 11.43 -17.24 -0.20 0.82 16 11 N -0.32 -7.51 3.67 -62.56 -0.23 -7.74 16 12 C 0.25 6.37 5.57 -5.19 -0.03 6.34 16 13 C -0.61 -17.33 9.24 -34.44 -0.32 -17.65 16 14 H 0.06 1.91 7.81 -52.49 -0.41 1.50 16 15 C 0.02 0.65 5.46 -17.82 -0.10 0.55 16 16 N -0.91 -26.59 13.65 55.43 0.76 -25.83 16 17 Si 1.08 25.28 29.90 -169.99 -5.08 20.19 16 18 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 19 H -0.29 -6.45 7.11 56.52 0.40 -6.04 16 20 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 21 N -0.30 -7.10 12.42 31.43 0.39 -6.71 16 22 N -0.20 -2.70 12.04 32.84 0.40 -2.31 16 23 N -0.06 -0.74 13.78 60.35 0.83 0.09 16 24 H 0.09 0.09 8.14 -51.93 -0.42 -0.34 16 25 H 0.10 -0.03 8.14 -51.93 -0.42 -0.45 16 26 H 0.10 0.16 8.14 -51.93 -0.42 -0.27 16 27 H 0.21 1.04 8.06 -52.48 -0.42 0.62 16 28 H 0.42 6.63 8.51 -40.82 -0.35 6.28 16 29 H 0.16 3.01 5.91 -52.49 -0.31 2.70 16 30 H 0.17 2.71 8.06 -52.48 -0.42 2.28 16 31 H 0.05 1.13 7.94 -51.93 -0.41 0.72 16 32 H 0.04 0.93 8.00 -51.93 -0.42 0.51 16 33 H 0.27 7.65 7.22 -40.82 -0.29 7.36 16 LS Contribution 303.20 15.07 4.57 4.57 Total: -1.00 -35.91 303.20 -4.19 -40.10 By element: Atomic # 1 Polarization: 5.78 SS G_CDS: -3.10 Total: 2.68 kcal Atomic # 6 Polarization: -0.26 SS G_CDS: -2.46 Total: -2.72 kcal Atomic # 7 Polarization: -58.03 SS G_CDS: 1.81 Total: -56.22 kcal Atomic # 8 Polarization: -8.67 SS G_CDS: 0.07 Total: -8.60 kcal Atomic # 14 Polarization: 25.28 SS G_CDS: -5.08 Total: 20.19 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -35.91 -4.19 -40.10 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290209261.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 188.961 kcal (2) G-P(sol) polarization free energy of solvation -35.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 153.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.101 kcal (6) G-S(sol) free energy of system = (1) + (5) 148.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds