Wall clock time and date at job start Mon Mar 30 2020 01:33:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34827 * 126.59803 * 2 1 4 4 C 1.36602 * 106.83951 * 180.13052 * 3 2 1 5 5 C 1.47497 * 125.77358 * 179.90481 * 4 3 2 6 6 O 1.21606 * 119.99842 * 359.70808 * 5 4 3 7 7 N 1.34783 * 120.00137 * 179.71826 * 5 4 3 8 8 C 1.40096 * 119.99652 * 179.97438 * 7 5 4 9 9 C 1.40421 * 125.98209 * 359.97088 * 8 7 5 10 10 C 1.35230 * 107.86833 * 179.75722 * 9 8 7 11 11 N 1.34966 * 107.86620 * 0.39274 * 10 9 8 12 12 C 1.46500 * 125.97782 * 179.86985 * 11 10 9 13 13 C 1.50706 * 109.47299 * 124.71059 * 12 11 10 14 14 H 1.07998 * 119.99503 * 0.02562 * 13 12 11 15 15 C 1.37871 * 120.00434 * 180.02562 * 13 12 11 16 16 N 1.31516 * 119.99826 * 359.72891 * 15 13 12 17 17 Si 1.86800 * 120.00406 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47364 * 179.72558 * 17 15 13 19 19 H 1.48508 * 109.46883 * 299.72681 * 17 15 13 20 20 H 1.48497 * 109.46870 * 59.72491 * 17 15 13 21 21 N 1.31237 * 125.97157 * 179.97438 * 8 7 5 22 22 N 1.34404 * 108.45262 * 359.63482 * 4 3 2 23 23 N 1.28760 * 109.52943 * 0.22506 * 22 4 3 24 24 H 1.09004 * 109.47068 * 270.24817 * 1 2 3 25 25 H 1.09005 * 109.47030 * 30.24569 * 1 2 3 26 26 H 1.08994 * 109.47205 * 150.24397 * 1 2 3 27 27 H 1.08005 * 126.58051 * 359.97438 * 3 2 1 28 28 H 0.96994 * 119.99585 * 359.97438 * 7 5 4 29 29 H 1.07998 * 126.06015 * 0.02562 * 9 8 7 30 30 H 1.08004 * 126.06817 * 180.25686 * 10 9 8 31 31 H 1.09004 * 109.47078 * 4.71821 * 12 11 10 32 32 H 1.08993 * 109.47364 * 244.71592 * 12 11 10 33 33 H 0.97000 * 120.00236 * 0.27947 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2688 1.0824 0.0000 4 6 3.5544 0.6207 -0.0030 5 6 4.7704 1.4554 -0.0061 6 8 4.6757 2.6678 -0.0114 7 7 5.9867 0.8745 -0.0031 8 6 7.1416 1.6675 -0.0066 9 6 7.1786 3.0712 -0.0137 10 6 8.4761 3.4521 -0.0095 11 7 9.2353 2.3362 -0.0090 12 6 10.6996 2.2914 -0.0076 13 6 11.1760 1.4672 1.1607 14 1 10.4595 1.0211 1.8345 15 6 12.5262 1.2828 1.3694 16 7 13.3985 1.8217 0.5457 17 14 13.1167 0.2606 2.8171 18 1 14.6008 0.2103 2.8151 19 1 12.6439 0.8762 4.0832 20 1 12.5746 -1.1172 2.7040 21 7 8.3783 1.2282 -0.0038 22 7 3.5238 -0.7230 0.0034 23 7 2.3008 -1.1257 0.0054 24 1 -0.3633 0.0045 1.0277 25 1 -0.3633 0.8878 -0.5177 26 1 -0.3633 -0.8921 -0.5100 27 1 1.9563 2.1163 -0.0004 28 1 6.0622 -0.0925 0.0014 29 1 6.3226 3.7296 -0.0171 30 1 8.8403 4.4689 -0.0092 31 1 11.0940 3.3040 0.0774 32 1 11.0502 1.8417 -0.9365 33 1 13.0920 2.3523 -0.2062 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000290209261.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:24 Heat of formation + Delta-G solvation = 122.065198 kcal Electronic energy + Delta-G solvation = -19840.822426 eV Core-core repulsion = 16519.135204 eV Total energy + Delta-G solvation = -3321.687222 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 276.108 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -43.30432 -42.25058 -40.39503 -36.47062 -35.77174 -35.38314 -32.87586 -31.95318 -31.03251 -28.91046 -28.11708 -25.69466 -24.61574 -23.28511 -22.73823 -21.97173 -20.99004 -19.28312 -19.09256 -18.18318 -17.35562 -17.15106 -16.93681 -16.38386 -15.77638 -15.73833 -15.63072 -15.46015 -14.96985 -14.27447 -14.07053 -13.97282 -13.89610 -13.71664 -13.24387 -13.12399 -12.61588 -12.32118 -12.06112 -11.95058 -11.69584 -11.36197 -11.19631 -11.00642 -10.69071 -10.44574 -9.84624 -9.21852 -8.77504 -6.55357 0.08148 0.38601 1.04604 1.09830 1.35380 1.51249 1.57823 1.73926 1.79517 2.23825 2.34316 2.49126 3.01487 3.03497 3.41074 3.78409 3.90212 3.91739 4.14689 4.40185 4.42543 4.56301 4.68686 4.71739 4.74961 4.80295 4.83179 5.05696 5.43000 5.55640 5.79156 5.92821 6.09124 6.27786 6.42498 6.73990 6.93119 6.96130 7.19968 8.58894 Molecular weight = 276.11amu Principal moments of inertia in cm(-1) A = 0.033388 B = 0.003267 C = 0.003048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.435381 B = 8569.779717 C = 9183.121904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.349 5.349 3 C 0.125 3.875 4 C -0.125 4.125 5 C 0.618 3.382 6 O -0.531 6.531 7 N -0.618 5.618 8 C 0.266 3.734 9 C -0.286 4.286 10 C 0.058 3.942 11 N -0.343 5.343 12 C 0.259 3.741 13 C -0.623 4.623 14 H 0.044 0.956 15 C -0.018 4.018 16 N -0.923 5.923 17 Si 1.119 2.881 18 H -0.274 1.274 19 H -0.270 1.270 20 H -0.277 1.277 21 N -0.347 5.347 22 N -0.231 5.231 23 N -0.088 5.088 24 H 0.109 0.891 25 H 0.134 0.866 26 H 0.109 0.891 27 H 0.248 0.752 28 H 0.423 0.577 29 H 0.178 0.822 30 H 0.207 0.793 31 H 0.058 0.942 32 H 0.016 0.984 33 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.393 1.186 -1.244 28.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.134 5.134 3 C -0.034 4.034 4 C -0.265 4.265 5 C 0.404 3.596 6 O -0.405 6.405 7 N -0.266 5.266 8 C 0.011 3.989 9 C -0.316 4.316 10 C -0.091 4.091 11 N -0.125 5.125 12 C 0.140 3.860 13 C -0.661 4.661 14 H 0.062 0.938 15 C -0.218 4.218 16 N -0.559 5.559 17 Si 0.940 3.060 18 H -0.199 1.199 19 H -0.196 1.196 20 H -0.203 1.203 21 N -0.178 5.178 22 N -0.104 5.104 23 N -0.069 5.069 24 H 0.128 0.872 25 H 0.152 0.848 26 H 0.127 0.873 27 H 0.264 0.736 28 H 0.260 0.740 29 H 0.195 0.805 30 H 0.223 0.777 31 H 0.075 0.925 32 H 0.034 0.966 33 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -26.293 -1.090 -0.511 26.321 hybrid contribution -1.576 1.633 -0.995 2.479 sum -27.870 0.544 -1.506 27.916 Atomic orbital electron populations 1.22784 0.68921 1.08010 1.06773 1.50784 1.10890 1.04435 1.47244 1.23897 0.88366 0.96628 0.94492 1.21052 0.94350 0.90201 1.20942 1.16932 0.80971 0.86497 0.75191 1.90712 1.86226 1.13449 1.50131 1.42328 1.02009 1.10517 1.71714 1.19408 0.86550 0.91481 1.01418 1.21770 0.97450 0.92790 1.19622 1.23249 0.91024 0.94278 1.00500 1.48606 1.06947 1.02630 1.54279 1.19438 0.70592 0.98652 0.97342 1.22298 0.94995 1.36007 1.12764 0.93785 1.27256 0.92768 0.97852 1.03927 1.70945 1.37135 1.32485 1.15316 0.82891 0.76097 0.74885 0.72143 1.19853 1.19554 1.20297 1.77310 0.98682 1.11627 1.30210 1.74652 1.14181 1.10913 1.10694 1.81939 0.93351 1.08082 1.23550 0.87249 0.84825 0.87286 0.73604 0.73994 0.80499 0.77662 0.92464 0.96580 0.92921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.04 11.51 127.77 1.47 1.51 16 2 N -0.35 -4.42 4.03 -368.57 -1.49 -5.90 16 3 C 0.12 1.76 11.31 83.85 0.95 2.71 16 4 C -0.13 -2.99 6.99 40.81 0.29 -2.70 16 5 C 0.62 18.58 7.78 86.68 0.67 19.25 16 6 O -0.53 -16.99 13.99 -4.05 -0.06 -17.05 16 7 N -0.62 -21.44 5.44 -310.39 -1.69 -23.13 16 8 C 0.27 11.16 8.11 133.34 1.08 12.24 16 9 C -0.29 -11.09 9.60 22.11 0.21 -10.87 16 10 C 0.06 2.26 11.43 83.52 0.95 3.22 16 11 N -0.34 -16.49 3.67 -351.84 -1.29 -17.78 16 12 C 0.26 13.56 5.57 85.64 0.48 14.04 16 13 C -0.62 -36.20 9.24 25.60 0.24 -35.96 16 14 H 0.04 2.69 7.81 -2.91 -0.02 2.67 16 15 C -0.02 -1.04 5.46 84.65 0.46 -0.58 16 16 N -0.92 -54.61 13.65 21.45 0.29 -54.32 16 17 Si 1.12 50.78 29.90 68.60 2.05 52.83 16 18 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 19 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 20 H -0.28 -12.16 7.11 99.48 0.71 -11.46 16 21 N -0.35 -17.04 12.42 -54.47 -0.68 -17.71 16 22 N -0.23 -6.12 12.04 -50.01 -0.60 -6.72 16 23 N -0.09 -1.97 13.78 37.02 0.51 -1.46 16 24 H 0.11 -0.24 8.14 -2.38 -0.02 -0.26 16 25 H 0.13 -0.76 8.14 -2.38 -0.02 -0.78 16 26 H 0.11 -0.02 8.14 -2.39 -0.02 -0.04 16 27 H 0.25 1.31 8.06 -2.91 -0.02 1.29 16 28 H 0.42 13.84 8.51 -92.71 -0.79 13.05 16 29 H 0.18 6.29 5.91 -2.91 -0.02 6.28 16 30 H 0.21 6.18 8.06 -2.91 -0.02 6.15 16 31 H 0.06 2.84 7.94 -2.39 -0.02 2.82 16 32 H 0.02 0.90 8.00 -2.39 -0.02 0.88 16 33 H 0.26 15.25 7.22 -92.71 -0.67 14.58 16 Total: -1.00 -79.69 303.20 4.34 -75.36 By element: Atomic # 1 Polarization: 12.56 SS G_CDS: 0.48 Total: 13.04 kcal Atomic # 6 Polarization: -3.96 SS G_CDS: 6.80 Total: 2.85 kcal Atomic # 7 Polarization: -122.08 SS G_CDS: -4.94 Total: -127.02 kcal Atomic # 8 Polarization: -16.99 SS G_CDS: -0.06 Total: -17.05 kcal Atomic # 14 Polarization: 50.78 SS G_CDS: 2.05 Total: 52.83 kcal Total: -79.69 4.34 -75.36 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290209261.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 197.422 kcal (2) G-P(sol) polarization free energy of solvation -79.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.357 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds