Wall clock time and date at job start Mon Mar 30 2020 02:09:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50697 * 109.47392 * 2 1 4 4 O 1.21289 * 119.99570 * 0.02562 * 3 2 1 5 5 C 1.46908 * 120.00739 * 179.97438 * 3 2 1 6 6 C 1.40018 * 120.11165 * 359.72646 * 5 3 2 7 7 C 1.37624 * 119.88213 * 179.78888 * 6 5 3 8 8 C 1.39047 * 120.11566 * 0.48832 * 7 6 5 9 9 O 1.35726 * 119.88055 * 179.72165 * 8 7 6 10 10 C 1.34313 * 117.00228 * 249.01651 * 9 8 7 11 11 O 1.20834 * 119.99338 * 5.77928 * 10 9 8 12 12 C 1.50693 * 120.00300 * 185.78212 * 10 9 8 13 13 C 1.53008 * 109.47084 * 180.02562 * 12 10 9 14 14 C 1.50703 * 109.47042 * 179.97438 * 13 12 10 15 15 H 1.07995 * 119.99764 * 359.97438 * 14 13 12 16 16 C 1.37872 * 119.99811 * 180.02562 * 14 13 12 17 17 N 1.31509 * 120.00202 * 179.97438 * 16 14 13 18 18 Si 1.86797 * 120.00193 * 359.97438 * 16 14 13 19 19 H 1.48505 * 109.47008 * 90.00210 * 18 16 14 20 20 H 1.48499 * 109.47696 * 210.00365 * 18 16 14 21 21 H 1.48501 * 109.47297 * 330.00429 * 18 16 14 22 22 C 1.39038 * 120.23273 * 359.74348 * 8 7 6 23 23 C 1.37634 * 120.11334 * 0.02562 * 22 8 7 24 24 H 1.09001 * 109.46690 * 299.99313 * 1 2 3 25 25 H 1.08997 * 109.47357 * 60.00198 * 1 2 3 26 26 H 1.09007 * 109.46723 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47292 * 120.00302 * 2 1 3 28 28 H 1.09010 * 109.47101 * 240.00239 * 2 1 3 29 29 H 1.07997 * 120.05515 * 0.02562 * 6 5 3 30 30 H 1.07998 * 119.94059 * 180.21148 * 7 6 5 31 31 H 1.09004 * 109.46962 * 299.99630 * 12 10 9 32 32 H 1.08994 * 109.47297 * 59.99838 * 12 10 9 33 33 H 1.08995 * 109.46690 * 299.99878 * 13 12 10 34 34 H 1.09001 * 109.46972 * 59.99872 * 13 12 10 35 35 H 0.96996 * 120.00703 * 179.97438 * 17 16 14 36 36 H 1.07998 * 119.94309 * 180.02562 * 22 8 7 37 37 H 1.08004 * 120.05803 * 179.97438 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2442 2.3426 0.0005 5 6 3.4767 1.6893 0.0006 6 6 4.3887 0.6269 0.0069 7 6 5.7408 0.8839 0.0030 8 6 6.2016 2.1958 0.0031 9 8 7.5360 2.4438 0.0049 10 6 8.0556 2.9771 1.1228 11 8 7.3635 3.1173 2.1033 12 6 9.5015 3.4004 1.1541 13 6 9.8362 3.9705 2.5340 14 6 11.2823 4.3933 2.5656 15 1 11.9009 4.2676 1.6893 16 6 11.8159 4.9396 3.7135 17 7 13.0780 5.3082 3.7412 18 14 10.7462 5.1564 5.2294 19 1 10.8265 3.9352 6.0706 20 1 11.2235 6.3267 6.0090 21 1 9.3381 5.3795 4.8139 22 6 5.3002 3.2544 0.0017 23 6 3.9460 3.0083 0.0008 24 1 -0.3633 0.5137 0.8901 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0278 0.0005 27 1 1.8934 -0.5139 0.8900 28 1 1.8933 -0.5138 -0.8901 29 1 4.0318 -0.3923 0.0110 30 1 6.4451 0.0652 0.0044 31 1 10.1371 2.5378 0.9539 32 1 9.6734 4.1627 0.3943 33 1 9.2006 4.8329 2.7347 34 1 9.6643 3.2079 3.2936 35 1 13.4534 5.6929 4.5487 36 1 5.6632 4.2716 0.0013 37 1 3.2466 3.8313 0.0001 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291259426.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:08 Heat of formation + Delta-G solvation = -103.412688 kcal Electronic energy + Delta-G solvation = -19988.185076 eV Core-core repulsion = 16695.675241 eV Total energy + Delta-G solvation = -3292.509836 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.30903 -40.09474 -38.29026 -36.65144 -33.74309 -33.36851 -31.63024 -31.34534 -30.74681 -26.96516 -25.54399 -23.81121 -22.70936 -21.88877 -20.22554 -19.79571 -18.28438 -17.48520 -17.07083 -16.71827 -16.09418 -15.79004 -15.55062 -14.81726 -14.57641 -14.21891 -13.86171 -13.81523 -13.64552 -13.19255 -12.95480 -12.71893 -12.61091 -12.37322 -12.16630 -11.83652 -11.59954 -11.55048 -11.10602 -10.88958 -10.47867 -10.29691 -10.16434 -10.00335 -9.82864 -9.35574 -9.34164 -8.94523 -8.62027 -6.13296 -4.14100 0.23860 1.05752 1.97439 2.40409 2.86928 3.29742 3.37268 3.45381 3.55181 3.65344 4.40447 4.41300 4.54380 4.61357 4.72080 4.82842 4.85137 4.99981 5.10249 5.21159 5.30117 5.43743 5.51356 5.54207 5.65253 5.80018 5.82972 5.84259 5.91163 6.03300 6.06058 6.25571 6.47831 6.70614 7.13017 7.19805 7.21830 7.62350 8.01694 8.39082 8.88323 9.47900 10.99087 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.036843 B = 0.003032 C = 0.002929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.803200 B = 9232.446400 C = 9558.667180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.171 4.171 3 C 0.398 3.602 4 O -0.454 6.454 5 C -0.184 4.184 6 C -0.057 4.057 7 C -0.136 4.136 8 C 0.130 3.870 9 O -0.304 6.304 10 C 0.457 3.543 11 O -0.488 6.488 12 C -0.092 4.092 13 C -0.002 4.002 14 C -0.529 4.529 15 H 0.077 0.923 16 C 0.072 3.928 17 N -0.898 5.898 18 Si 0.877 3.123 19 H -0.275 1.275 20 H -0.286 1.286 21 H -0.262 1.262 22 C -0.141 4.141 23 C -0.042 4.042 24 H 0.060 0.940 25 H 0.060 0.940 26 H 0.061 0.939 27 H 0.100 0.900 28 H 0.100 0.900 29 H 0.140 0.860 30 H 0.140 0.860 31 H 0.103 0.897 32 H 0.104 0.896 33 H 0.027 0.973 34 H 0.022 0.978 35 H 0.265 0.735 36 H 0.135 0.865 37 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.497 -11.877 -10.030 25.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.208 4.208 3 C 0.276 3.724 4 O -0.330 6.330 5 C -0.185 4.185 6 C -0.075 4.075 7 C -0.155 4.155 8 C 0.088 3.912 9 O -0.220 6.220 10 C 0.302 3.698 11 O -0.372 6.372 12 C -0.130 4.130 13 C -0.040 4.040 14 C -0.567 4.567 15 H 0.095 0.905 16 C -0.130 4.130 17 N -0.536 5.536 18 Si 0.703 3.297 19 H -0.201 1.201 20 H -0.212 1.212 21 H -0.186 1.186 22 C -0.159 4.159 23 C -0.061 4.061 24 H 0.079 0.921 25 H 0.079 0.921 26 H 0.080 0.920 27 H 0.118 0.882 28 H 0.118 0.882 29 H 0.157 0.843 30 H 0.158 0.842 31 H 0.122 0.878 32 H 0.122 0.878 33 H 0.045 0.955 34 H 0.041 0.959 35 H 0.075 0.925 36 H 0.153 0.847 37 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -20.997 -11.275 -9.578 25.685 hybrid contribution -0.274 0.113 0.875 0.924 sum -21.271 -11.161 -8.703 25.549 Atomic orbital electron populations 1.21598 0.93569 1.01857 1.03143 1.22001 0.98435 0.95636 1.04749 1.22431 0.87630 0.91330 0.71008 1.90529 1.58316 1.47808 1.36298 1.20541 0.95098 0.94339 1.08475 1.21256 0.91878 0.98846 0.95553 1.21102 0.96195 0.95582 1.02592 1.18991 0.82285 0.93234 0.96657 1.84683 1.20925 1.74935 1.41504 1.25322 0.92346 0.72878 0.79289 1.90680 1.62151 1.49684 1.34640 1.21634 0.84351 1.02964 1.04001 1.19518 0.97939 0.96614 0.89925 1.20984 0.93398 1.41862 1.00459 0.90538 1.24944 0.94835 0.94549 0.98687 1.69890 1.12789 1.42152 1.28798 0.86813 0.81692 0.78029 0.83116 1.20110 1.21232 1.18634 1.21373 0.93170 0.99486 1.01889 1.21250 0.94848 0.96388 0.93572 0.92075 0.92098 0.91970 0.88169 0.88201 0.84273 0.84245 0.87837 0.87795 0.95509 0.95928 0.92500 0.84681 0.84283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.96 9.20 37.16 0.34 -0.61 16 2 C -0.17 -1.07 5.02 -27.88 -0.14 -1.21 16 3 C 0.40 3.98 7.11 -30.80 -0.22 3.76 16 4 O -0.45 -5.92 15.97 5.55 0.09 -5.83 16 5 C -0.18 -1.96 5.87 -105.06 -0.62 -2.58 16 6 C -0.06 -0.52 9.46 -39.14 -0.37 -0.89 16 7 C -0.14 -1.52 9.97 -39.51 -0.39 -1.92 16 8 C 0.13 1.82 5.28 -38.98 -0.21 1.61 16 9 O -0.30 -4.66 10.03 -23.13 -0.23 -4.89 16 10 C 0.46 8.12 7.73 36.00 0.28 8.40 16 11 O -0.49 -10.08 15.39 -18.75 -0.29 -10.37 16 12 C -0.09 -1.69 5.75 -27.88 -0.16 -1.85 16 13 C 0.00 -0.06 3.33 -27.88 -0.09 -0.15 16 14 C -0.53 -14.51 9.66 -34.44 -0.33 -14.84 16 15 H 0.08 2.19 7.99 -52.49 -0.42 1.77 16 16 C 0.07 2.06 5.47 -17.82 -0.10 1.97 16 17 N -0.90 -27.06 13.96 55.43 0.77 -26.29 16 18 Si 0.88 21.77 27.47 -169.99 -4.67 17.10 16 19 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 20 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 21 H -0.26 -6.44 6.54 56.52 0.37 -6.07 16 22 C -0.14 -1.88 9.30 -39.51 -0.37 -2.24 16 23 C -0.04 -0.51 9.59 -39.14 -0.38 -0.89 16 24 H 0.06 0.47 8.10 -51.93 -0.42 0.05 16 25 H 0.06 0.45 8.10 -51.93 -0.42 0.03 16 26 H 0.06 0.30 8.14 -51.92 -0.42 -0.13 16 27 H 0.10 0.48 8.08 -51.93 -0.42 0.06 16 28 H 0.10 0.43 8.09 -51.92 -0.42 0.01 16 29 H 0.14 0.75 7.04 -52.49 -0.37 0.38 16 30 H 0.14 1.29 8.06 -52.49 -0.42 0.87 16 31 H 0.10 1.73 8.14 -51.93 -0.42 1.31 16 32 H 0.10 1.74 8.14 -51.93 -0.42 1.32 16 33 H 0.03 0.65 7.16 -51.93 -0.37 0.28 16 34 H 0.02 0.54 7.53 -51.93 -0.39 0.15 16 35 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 36 H 0.14 1.74 8.06 -52.49 -0.42 1.32 16 37 H 0.14 1.57 7.64 -52.48 -0.40 1.17 16 LS Contribution 324.87 15.07 4.90 4.90 Total: -1.00 -33.02 324.87 -7.10 -40.11 By element: Atomic # 1 Polarization: 1.64 SS G_CDS: -4.91 Total: -3.28 kcal Atomic # 6 Polarization: -8.69 SS G_CDS: -2.75 Total: -11.44 kcal Atomic # 7 Polarization: -27.06 SS G_CDS: 0.77 Total: -26.29 kcal Atomic # 8 Polarization: -20.66 SS G_CDS: -0.43 Total: -21.09 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.67 Total: 17.10 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -33.02 -7.10 -40.11 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291259426.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.298 kcal (2) G-P(sol) polarization free energy of solvation -33.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds