Wall clock time and date at job start Mon Mar 30 2020 02:09:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50697 * 109.47392 * 2 1 4 4 O 1.21289 * 119.99570 * 0.02562 * 3 2 1 5 5 C 1.46908 * 120.00739 * 179.97438 * 3 2 1 6 6 C 1.40018 * 120.11165 * 359.72646 * 5 3 2 7 7 C 1.37624 * 119.88213 * 179.78888 * 6 5 3 8 8 C 1.39047 * 120.11566 * 0.48832 * 7 6 5 9 9 O 1.35726 * 119.88055 * 179.72165 * 8 7 6 10 10 C 1.34313 * 117.00228 * 249.01651 * 9 8 7 11 11 O 1.20834 * 119.99338 * 5.77928 * 10 9 8 12 12 C 1.50693 * 120.00300 * 185.78212 * 10 9 8 13 13 C 1.53008 * 109.47084 * 180.02562 * 12 10 9 14 14 C 1.50703 * 109.47042 * 179.97438 * 13 12 10 15 15 H 1.07995 * 119.99764 * 359.97438 * 14 13 12 16 16 C 1.37872 * 119.99811 * 180.02562 * 14 13 12 17 17 N 1.31509 * 120.00202 * 179.97438 * 16 14 13 18 18 Si 1.86797 * 120.00193 * 359.97438 * 16 14 13 19 19 H 1.48505 * 109.47008 * 90.00210 * 18 16 14 20 20 H 1.48499 * 109.47696 * 210.00365 * 18 16 14 21 21 H 1.48501 * 109.47297 * 330.00429 * 18 16 14 22 22 C 1.39038 * 120.23273 * 359.74348 * 8 7 6 23 23 C 1.37634 * 120.11334 * 0.02562 * 22 8 7 24 24 H 1.09001 * 109.46690 * 299.99313 * 1 2 3 25 25 H 1.08997 * 109.47357 * 60.00198 * 1 2 3 26 26 H 1.09007 * 109.46723 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47292 * 120.00302 * 2 1 3 28 28 H 1.09010 * 109.47101 * 240.00239 * 2 1 3 29 29 H 1.07997 * 120.05515 * 0.02562 * 6 5 3 30 30 H 1.07998 * 119.94059 * 180.21148 * 7 6 5 31 31 H 1.09004 * 109.46962 * 299.99630 * 12 10 9 32 32 H 1.08994 * 109.47297 * 59.99838 * 12 10 9 33 33 H 1.08995 * 109.46690 * 299.99878 * 13 12 10 34 34 H 1.09001 * 109.46972 * 59.99872 * 13 12 10 35 35 H 0.96996 * 120.00703 * 179.97438 * 17 16 14 36 36 H 1.07998 * 119.94309 * 180.02562 * 22 8 7 37 37 H 1.08004 * 120.05803 * 179.97438 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2442 2.3426 0.0005 5 6 3.4767 1.6893 0.0006 6 6 4.3887 0.6269 0.0069 7 6 5.7408 0.8839 0.0030 8 6 6.2016 2.1958 0.0031 9 8 7.5360 2.4438 0.0049 10 6 8.0556 2.9771 1.1228 11 8 7.3635 3.1173 2.1033 12 6 9.5015 3.4004 1.1541 13 6 9.8362 3.9705 2.5340 14 6 11.2823 4.3933 2.5656 15 1 11.9009 4.2676 1.6893 16 6 11.8159 4.9396 3.7135 17 7 13.0780 5.3082 3.7412 18 14 10.7462 5.1564 5.2294 19 1 10.8265 3.9352 6.0706 20 1 11.2235 6.3267 6.0090 21 1 9.3381 5.3795 4.8139 22 6 5.3002 3.2544 0.0017 23 6 3.9460 3.0083 0.0008 24 1 -0.3633 0.5137 0.8901 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0278 0.0005 27 1 1.8934 -0.5139 0.8900 28 1 1.8933 -0.5138 -0.8901 29 1 4.0318 -0.3923 0.0110 30 1 6.4451 0.0652 0.0044 31 1 10.1371 2.5378 0.9539 32 1 9.6734 4.1627 0.3943 33 1 9.2006 4.8329 2.7347 34 1 9.6643 3.2079 3.2936 35 1 13.4534 5.6929 4.5487 36 1 5.6632 4.2716 0.0013 37 1 3.2466 3.8313 0.0001 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291259426.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:07 Heat of formation + Delta-G solvation = -121.785165 kcal Electronic energy + Delta-G solvation = -19988.981767 eV Core-core repulsion = 16695.675241 eV Total energy + Delta-G solvation = -3293.306526 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.50755 -40.98200 -39.35597 -37.86312 -35.67885 -33.98445 -33.50800 -32.19830 -31.72228 -28.65823 -26.46905 -24.89595 -23.71018 -23.13581 -21.71257 -20.65458 -19.61048 -19.08851 -18.11726 -17.84181 -17.60734 -16.55331 -16.44519 -16.29167 -15.77214 -15.63691 -15.10245 -14.75097 -14.69281 -14.58822 -14.34240 -13.90653 -13.60961 -13.35156 -13.12259 -13.05616 -12.92067 -12.59262 -12.29333 -12.07588 -12.01158 -11.91544 -11.84384 -11.62344 -11.44604 -10.80259 -10.79209 -10.22015 -9.91996 -8.33034 -6.37362 -0.67131 0.19061 0.96175 1.15105 1.33081 1.36026 1.48512 1.74389 2.32901 2.64309 2.94159 3.02475 3.56849 3.63064 3.80136 3.99282 4.12001 4.16492 4.23411 4.29652 4.34299 4.36784 4.53431 4.74012 4.82143 4.84515 5.00215 5.01814 5.07206 5.10998 5.17277 5.22482 5.29487 5.32520 5.34327 5.55277 5.68075 6.19578 6.47851 6.65996 6.73880 7.27903 8.82340 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.036843 B = 0.003032 C = 0.002929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.803200 B = 9232.446400 C = 9558.667180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.165 4.165 3 C 0.398 3.602 4 O -0.493 6.493 5 C -0.186 4.186 6 C -0.038 4.038 7 C -0.135 4.135 8 C 0.093 3.907 9 O -0.294 6.294 10 C 0.469 3.531 11 O -0.521 6.521 12 C -0.087 4.087 13 C 0.001 3.999 14 C -0.531 4.531 15 H 0.054 0.946 16 C 0.016 3.984 17 N -0.941 5.941 18 Si 0.937 3.063 19 H -0.267 1.267 20 H -0.280 1.280 21 H -0.259 1.259 22 C -0.155 4.155 23 C -0.058 4.058 24 H 0.043 0.957 25 H 0.047 0.953 26 H 0.085 0.915 27 H 0.126 0.874 28 H 0.131 0.869 29 H 0.189 0.811 30 H 0.163 0.837 31 H 0.123 0.877 32 H 0.119 0.881 33 H 0.017 0.983 34 H 0.018 0.982 35 H 0.268 0.732 36 H 0.126 0.874 37 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.213 -14.543 -10.260 28.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.202 4.202 3 C 0.279 3.721 4 O -0.371 6.371 5 C -0.187 4.187 6 C -0.056 4.056 7 C -0.153 4.153 8 C 0.051 3.949 9 O -0.210 6.210 10 C 0.315 3.685 11 O -0.407 6.407 12 C -0.124 4.124 13 C -0.037 4.037 14 C -0.569 4.569 15 H 0.072 0.928 16 C -0.183 4.183 17 N -0.581 5.581 18 Si 0.761 3.239 19 H -0.192 1.192 20 H -0.206 1.206 21 H -0.184 1.184 22 C -0.174 4.174 23 C -0.076 4.076 24 H 0.063 0.937 25 H 0.066 0.934 26 H 0.104 0.896 27 H 0.144 0.856 28 H 0.149 0.851 29 H 0.206 0.794 30 H 0.180 0.820 31 H 0.140 0.860 32 H 0.137 0.863 33 H 0.035 0.965 34 H 0.036 0.964 35 H 0.077 0.923 36 H 0.144 0.856 37 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -22.714 -13.960 -9.839 28.419 hybrid contribution 0.193 0.894 0.834 1.237 sum -22.521 -13.066 -9.006 27.551 Atomic orbital electron populations 1.21624 0.94115 1.02914 1.01752 1.22104 0.97939 0.92890 1.07277 1.23018 0.86858 0.92851 0.69409 1.90528 1.58983 1.49421 1.38216 1.20870 0.96226 0.94144 1.07432 1.21731 0.90517 1.00545 0.92770 1.21461 0.97638 0.94791 1.01389 1.19373 0.81316 0.94785 0.99399 1.84636 1.22147 1.74235 1.39990 1.24929 0.91798 0.72359 0.79439 1.90665 1.62864 1.51247 1.35973 1.21414 0.85558 1.04090 1.01379 1.19352 0.95130 0.96238 0.92961 1.21310 0.95141 1.40893 0.99519 0.92754 1.25776 0.95960 0.94642 1.01888 1.70008 1.14519 1.43708 1.29874 0.85851 0.79929 0.78387 0.79691 1.19173 1.20586 1.18361 1.21385 0.93839 0.99310 1.02863 1.21340 0.94307 0.97611 0.94332 0.93734 0.93377 0.89604 0.85621 0.85108 0.79413 0.81968 0.85950 0.86272 0.96505 0.96367 0.92277 0.85564 0.84597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 9.20 71.98 0.66 -0.91 16 2 C -0.17 -1.40 5.02 29.85 0.15 -1.25 16 3 C 0.40 7.11 7.11 27.96 0.20 7.30 16 4 O -0.49 -12.67 15.97 -3.06 -0.05 -12.72 16 5 C -0.19 -3.56 5.87 -20.15 -0.12 -3.68 16 6 C -0.04 -0.54 9.46 22.56 0.21 -0.32 16 7 C -0.13 -2.59 9.97 22.32 0.22 -2.37 16 8 C 0.09 2.48 5.28 22.66 0.12 2.60 16 9 O -0.29 -8.72 10.03 6.27 0.06 -8.65 16 10 C 0.47 16.29 7.73 71.23 0.55 16.84 16 11 O -0.52 -21.33 15.39 21.94 0.34 -20.99 16 12 C -0.09 -3.12 5.75 29.85 0.17 -2.95 16 13 C 0.00 0.04 3.33 29.85 0.10 0.14 16 14 C -0.53 -29.33 9.66 25.60 0.25 -29.08 16 15 H 0.05 3.17 7.99 -2.91 -0.02 3.14 16 16 C 0.02 0.89 5.47 84.65 0.46 1.36 16 17 N -0.94 -57.51 13.96 21.44 0.30 -57.21 16 18 Si 0.94 44.97 27.47 68.60 1.88 46.86 16 19 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 20 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 21 H -0.26 -12.24 6.54 99.48 0.65 -11.59 16 22 C -0.16 -4.18 9.30 22.32 0.21 -3.97 16 23 C -0.06 -1.38 9.59 22.55 0.22 -1.17 16 24 H 0.04 0.62 8.10 -2.39 -0.02 0.60 16 25 H 0.05 0.63 8.10 -2.39 -0.02 0.61 16 26 H 0.09 0.52 8.14 -2.38 -0.02 0.50 16 27 H 0.13 0.52 8.08 -2.39 -0.02 0.50 16 28 H 0.13 0.38 8.09 -2.38 -0.02 0.36 16 29 H 0.19 0.79 7.04 -2.91 -0.02 0.77 16 30 H 0.16 2.34 8.06 -2.91 -0.02 2.32 16 31 H 0.12 3.92 8.14 -2.39 -0.02 3.90 16 32 H 0.12 3.89 8.14 -2.39 -0.02 3.87 16 33 H 0.02 0.81 7.16 -2.39 -0.02 0.79 16 34 H 0.02 0.86 7.53 -2.39 -0.02 0.84 16 35 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 36 H 0.13 3.44 8.06 -2.91 -0.02 3.41 16 37 H 0.14 3.22 7.64 -2.91 -0.02 3.19 16 Total: -1.00 -73.35 324.87 6.95 -66.40 By element: Atomic # 1 Polarization: 2.77 SS G_CDS: 1.01 Total: 3.78 kcal Atomic # 6 Polarization: -20.87 SS G_CDS: 3.40 Total: -17.46 kcal Atomic # 7 Polarization: -57.51 SS G_CDS: 0.30 Total: -57.21 kcal Atomic # 8 Polarization: -42.72 SS G_CDS: 0.35 Total: -42.36 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 1.88 Total: 46.86 kcal Total: -73.35 6.95 -66.40 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291259426.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.380 kcal (2) G-P(sol) polarization free energy of solvation -73.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds