Wall clock time and date at job start Mon Mar 30 2020 02:09:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50699 * 119.99814 * 2 1 4 4 O 1.42901 * 109.47101 * 135.00214 * 3 2 1 5 5 C 1.35962 * 116.99758 * 180.02562 * 4 3 2 6 6 C 1.38719 * 119.99686 * 179.97438 * 5 4 3 7 7 C 1.38109 * 119.99782 * 180.02562 * 6 5 4 8 8 C 1.38715 * 120.00226 * 0.02863 * 7 6 5 9 9 O 1.35984 * 119.99936 * 179.97438 * 8 7 6 10 10 C 1.34248 * 117.00221 * 77.08794 * 9 8 7 11 11 O 1.20825 * 119.99520 * 355.08921 * 10 9 8 12 12 C 1.50697 * 119.99855 * 175.08568 * 10 9 8 13 13 C 1.53001 * 109.46798 * 180.02562 * 12 10 9 14 14 C 1.50706 * 109.47199 * 180.02562 * 13 12 10 15 15 H 1.07999 * 119.99361 * 359.97438 * 14 13 12 16 16 C 1.37877 * 120.00174 * 179.97438 * 14 13 12 17 17 N 1.31509 * 119.99821 * 179.97438 * 16 14 13 18 18 Si 1.86792 * 119.99851 * 359.97438 * 16 14 13 19 19 H 1.48506 * 109.47242 * 90.00145 * 18 16 14 20 20 H 1.48502 * 109.47241 * 210.00295 * 18 16 14 21 21 H 1.48508 * 109.47522 * 330.00044 * 18 16 14 22 22 C 1.38711 * 119.99760 * 0.24402 * 8 7 6 23 23 C 1.38107 * 119.99909 * 359.45767 * 22 8 7 24 24 H 1.07996 * 119.99995 * 359.97438 * 1 2 3 25 25 H 1.07998 * 119.99752 * 180.02562 * 1 2 3 26 26 H 1.07995 * 120.00486 * 180.02562 * 2 1 3 27 27 H 1.08997 * 109.47499 * 15.00228 * 3 2 1 28 28 H 1.09004 * 109.47432 * 255.00014 * 3 2 1 29 29 H 1.07995 * 119.99916 * 0.02562 * 6 5 4 30 30 H 1.08001 * 119.99890 * 179.97438 * 7 6 5 31 31 H 1.08998 * 109.47250 * 299.99880 * 12 10 9 32 32 H 1.08999 * 109.47589 * 60.00229 * 12 10 9 33 33 H 1.08998 * 109.46790 * 299.99755 * 13 12 10 34 34 H 1.08993 * 109.47537 * 59.99812 * 13 12 10 35 35 H 0.96996 * 119.99804 * 180.02562 * 17 16 14 36 36 H 1.07999 * 119.99534 * 179.70392 * 22 8 7 37 37 H 1.08003 * 119.99600 * 180.24841 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 8 3.1267 1.2413 0.9526 5 6 3.9093 2.3459 1.0789 6 6 4.9591 2.3520 1.9857 7 6 5.7538 3.4742 2.1144 8 6 5.5019 4.5954 1.3374 9 8 6.2841 5.7005 1.4645 10 6 7.4941 5.6608 0.8843 11 8 7.8793 4.6429 0.3596 12 6 8.3717 6.8859 0.8875 13 6 9.6846 6.5744 0.1663 14 6 10.5626 7.7993 0.1699 15 1 10.2183 8.7090 0.6393 16 6 11.8053 7.7586 -0.4259 17 7 12.5712 8.8276 -0.4231 18 14 12.4010 6.1849 -1.2370 19 1 11.9911 6.1778 -2.6643 20 1 13.8815 6.1112 -1.1467 21 1 11.8041 5.0145 -0.5447 22 6 4.4487 4.5912 0.4347 23 6 3.6578 3.4668 0.3016 24 1 -0.5400 0.9353 0.0004 25 1 -0.5400 -0.9353 0.0004 26 1 1.8500 -0.9352 -0.0004 27 1 1.3855 2.1161 0.2660 28 1 2.4755 1.4869 -0.9927 29 1 5.1549 1.4794 2.5910 30 1 6.5708 3.4792 2.8207 31 1 7.8603 7.7005 0.3746 32 1 8.5823 7.1794 1.9158 33 1 10.1961 5.7597 0.6788 34 1 9.4737 6.2812 -0.8620 35 1 13.4453 8.7991 -0.8426 36 1 4.2497 5.4658 -0.1668 37 1 2.8403 3.4622 -0.4041 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291322630.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:10 Heat of formation + Delta-G solvation = -73.775966 kcal Electronic energy + Delta-G solvation = -19862.224400 eV Core-core repulsion = 16570.999709 eV Total energy + Delta-G solvation = -3291.224691 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.11573 -40.03293 -37.78552 -36.26814 -34.41270 -33.66223 -31.49689 -31.33455 -29.50113 -27.11211 -26.40106 -23.24108 -23.13124 -21.39390 -20.42588 -19.92350 -18.53999 -17.95774 -17.19806 -16.95517 -16.36358 -15.99085 -15.66409 -14.97295 -14.66227 -14.17741 -13.96770 -13.83500 -13.67334 -13.32680 -12.85569 -12.79110 -12.66381 -12.49603 -11.78219 -11.58793 -11.43094 -11.29982 -11.05317 -10.59819 -10.37303 -10.22258 -10.06545 -9.97241 -9.77206 -9.29119 -9.24784 -8.58028 -8.25280 -6.09452 -4.09675 1.03581 1.10822 1.57727 2.54689 2.93296 3.06069 3.32863 3.40027 3.49020 3.68323 4.32539 4.44243 4.52317 4.57268 4.66536 4.80499 4.90922 4.98166 5.12200 5.24031 5.25199 5.34040 5.49709 5.75726 5.81421 5.93264 6.01366 6.02396 6.04402 6.09994 6.24873 6.34309 6.54850 6.82219 7.11911 7.20061 7.26687 7.67773 8.19981 8.44121 8.92612 9.52086 11.03011 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.038565 B = 0.002858 C = 0.002776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.877476 B = 9793.510979 C =10083.485920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.155 4.155 3 C 0.085 3.915 4 O -0.311 6.311 5 C 0.125 3.875 6 C -0.136 4.136 7 C -0.080 4.080 8 C 0.055 3.945 9 O -0.300 6.300 10 C 0.453 3.547 11 O -0.493 6.493 12 C -0.093 4.093 13 C -0.002 4.002 14 C -0.528 4.528 15 H 0.076 0.924 16 C 0.071 3.929 17 N -0.899 5.899 18 Si 0.877 3.123 19 H -0.276 1.276 20 H -0.287 1.287 21 H -0.262 1.262 22 C -0.081 4.081 23 C -0.196 4.196 24 H 0.100 0.900 25 H 0.108 0.892 26 H 0.120 0.880 27 H 0.069 0.931 28 H 0.074 0.926 29 H 0.137 0.863 30 H 0.136 0.864 31 H 0.101 0.899 32 H 0.102 0.898 33 H 0.027 0.973 34 H 0.022 0.978 35 H 0.265 0.735 36 H 0.135 0.865 37 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.622 -14.457 2.580 27.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.173 4.173 3 C 0.010 3.990 4 O -0.224 6.224 5 C 0.080 3.920 6 C -0.154 4.154 7 C -0.099 4.099 8 C 0.014 3.986 9 O -0.217 6.217 10 C 0.297 3.703 11 O -0.377 6.377 12 C -0.130 4.130 13 C -0.040 4.040 14 C -0.566 4.566 15 H 0.094 0.906 16 C -0.131 4.131 17 N -0.537 5.537 18 Si 0.704 3.296 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.186 1.186 22 C -0.099 4.099 23 C -0.214 4.214 24 H 0.118 0.882 25 H 0.126 0.874 26 H 0.138 0.862 27 H 0.087 0.913 28 H 0.092 0.908 29 H 0.155 0.845 30 H 0.154 0.846 31 H 0.120 0.880 32 H 0.120 0.880 33 H 0.045 0.955 34 H 0.040 0.960 35 H 0.074 0.926 36 H 0.153 0.847 37 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -23.306 -14.908 2.460 27.776 hybrid contribution 0.309 -0.670 -0.686 1.007 sum -22.997 -15.578 1.775 27.834 Atomic orbital electron populations 1.23893 0.95403 1.02626 0.98967 1.22673 0.95662 0.97808 1.01185 1.21856 0.87889 0.96894 0.92377 1.86094 1.42118 1.35675 1.58562 1.18973 0.91586 0.85958 0.95454 1.20253 0.95287 0.99390 1.00517 1.21171 0.98810 0.91371 0.98532 1.18476 0.93659 0.87721 0.98769 1.84749 1.28379 1.38400 1.70163 1.25258 0.79351 0.91881 0.73766 1.90651 1.72240 1.33605 1.41207 1.21587 0.95166 0.91449 1.04817 1.19504 0.90499 0.98252 0.95739 1.21009 1.00458 0.97391 1.37700 0.90574 1.24951 0.96447 0.96226 0.95469 1.69898 1.10643 1.28563 1.44643 0.86808 0.77792 0.84653 0.80365 1.20161 1.21277 1.18593 1.20970 0.94721 0.98303 0.95926 1.21052 1.03545 0.93434 1.03419 0.88189 0.87397 0.86182 0.91324 0.90836 0.84502 0.84607 0.88042 0.87994 0.95517 0.96009 0.92563 0.84718 0.84859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.90 14.31 29.01 0.42 -0.48 16 2 C -0.16 -1.04 9.89 -36.03 -0.36 -1.40 16 3 C 0.08 0.66 5.15 36.01 0.19 0.84 16 4 O -0.31 -3.38 10.12 -19.62 -0.20 -3.58 16 5 C 0.13 1.50 6.69 -39.23 -0.26 1.24 16 6 C -0.14 -1.68 9.98 -39.45 -0.39 -2.07 16 7 C -0.08 -1.12 9.56 -39.45 -0.38 -1.49 16 8 C 0.06 0.84 5.13 -39.23 -0.20 0.64 16 9 O -0.30 -4.96 10.03 -23.77 -0.24 -5.20 16 10 C 0.45 8.50 7.83 36.00 0.28 8.79 16 11 O -0.49 -10.66 15.47 -18.75 -0.29 -10.95 16 12 C -0.09 -1.78 5.75 -27.88 -0.16 -1.94 16 13 C 0.00 -0.06 3.33 -27.88 -0.09 -0.15 16 14 C -0.53 -14.75 9.66 -34.44 -0.33 -15.08 16 15 H 0.08 2.22 7.99 -52.49 -0.42 1.80 16 16 C 0.07 2.06 5.47 -17.82 -0.10 1.97 16 17 N -0.90 -27.41 13.96 55.43 0.77 -26.64 16 18 Si 0.88 22.09 27.47 -169.99 -4.67 17.42 16 19 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 20 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 21 H -0.26 -6.53 6.54 56.52 0.37 -6.16 16 22 C -0.08 -1.04 9.98 -39.45 -0.39 -1.44 16 23 C -0.20 -2.19 9.03 -39.46 -0.36 -2.55 16 24 H 0.10 0.43 7.90 -52.49 -0.41 0.02 16 25 H 0.11 0.42 8.06 -52.49 -0.42 0.00 16 26 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 27 H 0.07 0.45 7.38 -51.93 -0.38 0.06 16 28 H 0.07 0.52 7.66 -51.93 -0.40 0.12 16 29 H 0.14 1.42 8.06 -52.49 -0.42 1.00 16 30 H 0.14 1.76 8.06 -52.49 -0.42 1.34 16 31 H 0.10 1.79 8.14 -51.93 -0.42 1.36 16 32 H 0.10 1.80 8.14 -51.93 -0.42 1.38 16 33 H 0.03 0.67 7.15 -51.93 -0.37 0.29 16 34 H 0.02 0.54 7.53 -51.93 -0.39 0.15 16 35 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 36 H 0.13 1.51 8.06 -52.49 -0.42 1.08 16 37 H 0.13 1.11 6.29 -52.48 -0.33 0.78 16 LS Contribution 326.36 15.07 4.92 4.92 Total: -1.00 -32.84 326.36 -6.68 -39.52 By element: Atomic # 1 Polarization: 2.48 SS G_CDS: -4.83 Total: -2.36 kcal Atomic # 6 Polarization: -10.99 SS G_CDS: -2.14 Total: -13.14 kcal Atomic # 7 Polarization: -27.41 SS G_CDS: 0.77 Total: -26.64 kcal Atomic # 8 Polarization: -19.00 SS G_CDS: -0.73 Total: -19.73 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -4.67 Total: 17.42 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -32.84 -6.68 -39.52 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291322630.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.260 kcal (2) G-P(sol) polarization free energy of solvation -32.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds