Wall clock time and date at job start Mon Mar 30 2020 02:09:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50699 * 119.99814 * 2 1 4 4 O 1.42901 * 109.47101 * 135.00214 * 3 2 1 5 5 C 1.35962 * 116.99758 * 180.02562 * 4 3 2 6 6 C 1.38719 * 119.99686 * 179.97438 * 5 4 3 7 7 C 1.38109 * 119.99782 * 180.02562 * 6 5 4 8 8 C 1.38715 * 120.00226 * 0.02863 * 7 6 5 9 9 O 1.35984 * 119.99936 * 179.97438 * 8 7 6 10 10 C 1.34248 * 117.00221 * 77.08794 * 9 8 7 11 11 O 1.20825 * 119.99520 * 355.08921 * 10 9 8 12 12 C 1.50697 * 119.99855 * 175.08568 * 10 9 8 13 13 C 1.53001 * 109.46798 * 180.02562 * 12 10 9 14 14 C 1.50706 * 109.47199 * 180.02562 * 13 12 10 15 15 H 1.07999 * 119.99361 * 359.97438 * 14 13 12 16 16 C 1.37877 * 120.00174 * 179.97438 * 14 13 12 17 17 N 1.31509 * 119.99821 * 179.97438 * 16 14 13 18 18 Si 1.86792 * 119.99851 * 359.97438 * 16 14 13 19 19 H 1.48506 * 109.47242 * 90.00145 * 18 16 14 20 20 H 1.48502 * 109.47241 * 210.00295 * 18 16 14 21 21 H 1.48508 * 109.47522 * 330.00044 * 18 16 14 22 22 C 1.38711 * 119.99760 * 0.24402 * 8 7 6 23 23 C 1.38107 * 119.99909 * 359.45767 * 22 8 7 24 24 H 1.07996 * 119.99995 * 359.97438 * 1 2 3 25 25 H 1.07998 * 119.99752 * 180.02562 * 1 2 3 26 26 H 1.07995 * 120.00486 * 180.02562 * 2 1 3 27 27 H 1.08997 * 109.47499 * 15.00228 * 3 2 1 28 28 H 1.09004 * 109.47432 * 255.00014 * 3 2 1 29 29 H 1.07995 * 119.99916 * 0.02562 * 6 5 4 30 30 H 1.08001 * 119.99890 * 179.97438 * 7 6 5 31 31 H 1.08998 * 109.47250 * 299.99880 * 12 10 9 32 32 H 1.08999 * 109.47589 * 60.00229 * 12 10 9 33 33 H 1.08998 * 109.46790 * 299.99755 * 13 12 10 34 34 H 1.08993 * 109.47537 * 59.99812 * 13 12 10 35 35 H 0.96996 * 119.99804 * 180.02562 * 17 16 14 36 36 H 1.07999 * 119.99534 * 179.70392 * 22 8 7 37 37 H 1.08003 * 119.99600 * 180.24841 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 8 3.1267 1.2413 0.9526 5 6 3.9093 2.3459 1.0789 6 6 4.9591 2.3520 1.9857 7 6 5.7538 3.4742 2.1144 8 6 5.5019 4.5954 1.3374 9 8 6.2841 5.7005 1.4645 10 6 7.4941 5.6608 0.8843 11 8 7.8793 4.6429 0.3596 12 6 8.3717 6.8859 0.8875 13 6 9.6846 6.5744 0.1663 14 6 10.5626 7.7993 0.1699 15 1 10.2183 8.7090 0.6393 16 6 11.8053 7.7586 -0.4259 17 7 12.5712 8.8276 -0.4231 18 14 12.4010 6.1849 -1.2370 19 1 11.9911 6.1778 -2.6643 20 1 13.8815 6.1112 -1.1467 21 1 11.8041 5.0145 -0.5447 22 6 4.4487 4.5912 0.4347 23 6 3.6578 3.4668 0.3016 24 1 -0.5400 0.9353 0.0004 25 1 -0.5400 -0.9353 0.0004 26 1 1.8500 -0.9352 -0.0004 27 1 1.3855 2.1161 0.2660 28 1 2.4755 1.4869 -0.9927 29 1 5.1549 1.4794 2.5910 30 1 6.5708 3.4792 2.8207 31 1 7.8603 7.7005 0.3746 32 1 8.5823 7.1794 1.9158 33 1 10.1961 5.7597 0.6788 34 1 9.4737 6.2812 -0.8620 35 1 13.4453 8.7991 -0.8426 36 1 4.2497 5.4658 -0.1668 37 1 2.8403 3.4622 -0.4041 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291322630.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:09:09 Heat of formation + Delta-G solvation = -91.958203 kcal Electronic energy + Delta-G solvation = -19863.012841 eV Core-core repulsion = 16570.999709 eV Total energy + Delta-G solvation = -3292.013132 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.36218 -40.98842 -38.93554 -37.43919 -35.65311 -34.95039 -33.46896 -32.27176 -30.55195 -28.47023 -27.49793 -24.68102 -24.05505 -22.81596 -21.50391 -20.88792 -19.54760 -19.33516 -18.88287 -17.97428 -17.63210 -17.11129 -16.69634 -16.27952 -15.85550 -15.65900 -15.26498 -14.83535 -14.70030 -14.59903 -14.30365 -14.02257 -13.63021 -13.57348 -13.35445 -12.98039 -12.74850 -12.28014 -12.18846 -12.06100 -12.02922 -11.82080 -11.62812 -11.55119 -11.42796 -10.79377 -10.45663 -10.19566 -9.23129 -8.32202 -6.36358 -0.00184 0.16277 1.08666 1.11284 1.33833 1.36342 1.49672 1.74908 2.29699 2.33947 2.64146 3.03154 3.63925 3.68967 3.76934 3.91951 4.05937 4.07739 4.23472 4.26047 4.33855 4.37775 4.49667 4.54138 4.74065 4.84915 4.93406 4.96344 5.11986 5.21806 5.26501 5.32841 5.34882 5.54485 5.60739 5.61952 5.69950 6.20789 6.28529 6.69580 6.82978 7.28722 8.83189 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.038565 B = 0.002858 C = 0.002776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.877476 B = 9793.510979 C =10083.485920 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.179 4.179 3 C 0.077 3.923 4 O -0.320 6.320 5 C 0.128 3.872 6 C -0.144 4.144 7 C -0.090 4.090 8 C 0.015 3.985 9 O -0.291 6.291 10 C 0.464 3.536 11 O -0.525 6.525 12 C -0.088 4.088 13 C 0.002 3.998 14 C -0.531 4.531 15 H 0.053 0.947 16 C 0.015 3.985 17 N -0.941 5.941 18 Si 0.938 3.062 19 H -0.268 1.268 20 H -0.279 1.279 21 H -0.259 1.259 22 C -0.083 4.083 23 C -0.191 4.191 24 H 0.111 0.889 25 H 0.121 0.879 26 H 0.117 0.883 27 H 0.084 0.916 28 H 0.081 0.919 29 H 0.152 0.848 30 H 0.136 0.864 31 H 0.119 0.881 32 H 0.118 0.882 33 H 0.017 0.983 34 H 0.016 0.984 35 H 0.268 0.732 36 H 0.150 0.850 37 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.786 -15.958 2.050 30.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.197 4.197 3 C 0.003 3.997 4 O -0.234 6.234 5 C 0.082 3.918 6 C -0.163 4.163 7 C -0.109 4.109 8 C -0.026 4.026 9 O -0.207 6.207 10 C 0.309 3.691 11 O -0.412 6.412 12 C -0.125 4.125 13 C -0.036 4.036 14 C -0.569 4.569 15 H 0.072 0.928 16 C -0.183 4.183 17 N -0.581 5.581 18 Si 0.762 3.238 19 H -0.193 1.193 20 H -0.205 1.205 21 H -0.183 1.183 22 C -0.101 4.101 23 C -0.209 4.209 24 H 0.129 0.871 25 H 0.139 0.861 26 H 0.135 0.865 27 H 0.102 0.898 28 H 0.099 0.901 29 H 0.170 0.830 30 H 0.154 0.846 31 H 0.137 0.863 32 H 0.136 0.864 33 H 0.036 0.964 34 H 0.035 0.965 35 H 0.077 0.923 36 H 0.168 0.832 37 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -25.506 -16.407 1.943 30.389 hybrid contribution 0.786 -0.247 -0.486 0.956 sum -24.720 -16.654 1.457 29.842 Atomic orbital electron populations 1.24129 0.94930 1.03832 0.96494 1.22673 0.96219 0.97308 1.03460 1.22135 0.87408 0.98113 0.92079 1.86100 1.42687 1.35228 1.59429 1.19130 0.91285 0.86463 0.94896 1.20450 0.95385 0.99403 1.01018 1.21268 0.99291 0.91674 0.98660 1.18841 0.94748 0.87972 1.01067 1.84715 1.27390 1.39208 1.69387 1.24936 0.80044 0.90916 0.73159 1.90633 1.73177 1.34620 1.42804 1.21385 0.93430 0.92329 1.05364 1.19338 0.92261 0.96034 0.95965 1.21320 1.00984 0.97975 1.36588 0.92834 1.25789 0.96899 0.99273 0.96378 1.70013 1.11312 1.30655 1.46126 0.85836 0.77578 0.80739 0.79613 1.19289 1.20454 1.18311 1.21216 0.94109 0.99449 0.95369 1.21364 1.03798 0.92361 1.03383 0.87092 0.86098 0.86535 0.89786 0.90093 0.83005 0.84621 0.86272 0.86413 0.96430 0.96550 0.92287 0.83199 0.81736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.21 14.31 67.78 0.97 -0.24 16 2 C -0.18 -2.03 9.89 25.65 0.25 -1.77 16 3 C 0.08 1.00 5.15 71.24 0.37 1.37 16 4 O -0.32 -6.35 10.12 -93.13 -0.94 -7.29 16 5 C 0.13 2.82 6.69 22.50 0.15 2.97 16 6 C -0.14 -3.40 9.98 22.35 0.22 -3.18 16 7 C -0.09 -2.47 9.56 22.35 0.21 -2.26 16 8 C 0.01 0.43 5.13 22.50 0.12 0.55 16 9 O -0.29 -9.38 10.03 4.01 0.04 -9.34 16 10 C 0.46 17.07 7.83 71.23 0.56 17.63 16 11 O -0.53 -22.51 15.47 21.97 0.34 -22.17 16 12 C -0.09 -3.30 5.75 29.85 0.17 -3.13 16 13 C 0.00 0.08 3.33 29.85 0.10 0.18 16 14 C -0.53 -29.88 9.66 25.60 0.25 -29.63 16 15 H 0.05 3.18 7.99 -2.91 -0.02 3.15 16 16 C 0.01 0.86 5.47 84.66 0.46 1.32 16 17 N -0.94 -58.06 13.96 21.45 0.30 -57.76 16 18 Si 0.94 45.56 27.47 68.60 1.88 47.45 16 19 H -0.27 -12.57 7.11 99.48 0.71 -11.87 16 20 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 21 H -0.26 -12.37 6.54 99.48 0.65 -11.72 16 22 C -0.08 -2.00 9.98 22.35 0.22 -1.78 16 23 C -0.19 -3.80 9.03 22.35 0.20 -3.60 16 24 H 0.11 0.61 7.90 -2.91 -0.02 0.58 16 25 H 0.12 0.61 8.06 -2.91 -0.02 0.59 16 26 H 0.12 1.36 8.06 -2.91 -0.02 1.33 16 27 H 0.08 0.82 7.38 -2.39 -0.02 0.81 16 28 H 0.08 0.92 7.66 -2.38 -0.02 0.90 16 29 H 0.15 2.98 8.06 -2.91 -0.02 2.96 16 30 H 0.14 3.55 8.06 -2.91 -0.02 3.52 16 31 H 0.12 4.04 8.14 -2.39 -0.02 4.02 16 32 H 0.12 4.04 8.14 -2.39 -0.02 4.02 16 33 H 0.02 0.86 7.15 -2.39 -0.02 0.85 16 34 H 0.02 0.79 7.53 -2.39 -0.02 0.77 16 35 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 36 H 0.15 3.03 8.06 -2.91 -0.02 3.01 16 37 H 0.17 2.14 6.29 -2.91 -0.02 2.13 16 Total: -1.00 -70.22 326.36 6.88 -63.34 By element: Atomic # 1 Polarization: 6.36 SS G_CDS: 1.00 Total: 7.36 kcal Atomic # 6 Polarization: -25.84 SS G_CDS: 4.26 Total: -21.58 kcal Atomic # 7 Polarization: -58.06 SS G_CDS: 0.30 Total: -57.76 kcal Atomic # 8 Polarization: -38.24 SS G_CDS: -0.56 Total: -38.80 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 1.88 Total: 47.45 kcal Total: -70.22 6.88 -63.34 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291322630.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.615 kcal (2) G-P(sol) polarization free energy of solvation -70.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds