Wall clock time and date at job start Mon Mar 30 2020 02:14:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21249 * 120.00101 * 2 1 4 4 C 1.47166 * 119.99706 * 180.02562 * 2 1 3 5 5 C 1.39869 * 120.17588 * 359.97438 * 4 2 1 6 6 C 1.37867 * 119.82622 * 180.02562 * 5 4 2 7 7 C 1.38423 * 120.17192 * 359.74111 * 6 5 4 8 8 C 1.38385 * 120.34903 * 0.51205 * 7 6 5 9 9 C 1.50706 * 119.91321 * 179.76544 * 8 7 6 10 10 O 1.45193 * 109.46845 * 269.72694 * 9 8 7 11 11 C 1.34231 * 117.00126 * 180.02562 * 10 9 8 12 12 O 1.20833 * 119.99644 * 0.02562 * 11 10 9 13 13 C 1.50696 * 120.00640 * 179.71955 * 11 10 9 14 14 C 1.52996 * 109.47298 * 180.27355 * 13 11 10 15 15 C 1.50701 * 109.46972 * 179.97438 * 14 13 11 16 16 H 1.08001 * 120.00292 * 0.02562 * 15 14 13 17 17 C 1.37880 * 120.00289 * 180.02562 * 15 14 13 18 18 N 1.31514 * 119.99508 * 0.02562 * 17 15 14 19 19 Si 1.86795 * 120.00323 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.47159 * 0.02562 * 19 17 15 21 21 H 1.48505 * 109.47290 * 120.00035 * 19 17 15 22 22 H 1.48495 * 109.47273 * 239.99838 * 19 17 15 23 23 C 1.37902 * 120.16973 * 359.49138 * 8 7 6 24 24 H 1.09000 * 109.47353 * 269.99832 * 1 2 3 25 25 H 1.08997 * 109.47224 * 30.00530 * 1 2 3 26 26 H 1.09002 * 109.47012 * 150.00141 * 1 2 3 27 27 H 1.07996 * 120.08482 * 359.97438 * 5 4 2 28 28 H 1.08000 * 119.91307 * 180.02562 * 6 5 4 29 29 H 1.08003 * 119.82420 * 180.27922 * 7 6 5 30 30 H 1.08997 * 109.46698 * 149.72676 * 9 8 7 31 31 H 1.08997 * 109.46779 * 29.72795 * 9 8 7 32 32 H 1.09000 * 109.47190 * 300.28291 * 13 11 10 33 33 H 1.09006 * 109.46468 * 60.27874 * 13 11 10 34 34 H 1.08994 * 109.47515 * 300.00215 * 14 13 11 35 35 H 1.09006 * 109.46938 * 60.00806 * 14 13 11 36 36 H 0.96999 * 119.99800 * 180.02562 * 18 17 15 37 37 H 1.07998 * 120.08782 * 180.23137 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1132 1.0500 0.0000 4 6 2.2428 -1.2745 -0.0006 5 6 1.5471 -2.4879 -0.0006 6 6 2.2436 -3.6777 -0.0006 7 6 3.6278 -3.6735 -0.0060 8 6 4.3234 -2.4772 -0.0007 9 6 5.8305 -2.4841 -0.0014 10 8 6.3149 -2.4861 1.3674 11 6 7.6457 -2.4916 1.5428 12 8 8.3814 -2.4942 0.5842 13 6 8.2224 -2.4876 2.9350 14 6 9.7502 -2.4884 2.8543 15 6 10.3268 -2.4838 4.2466 16 1 9.6693 -2.4809 5.1034 17 6 11.6937 -2.4831 4.4268 18 7 12.4944 -2.4860 3.3835 19 14 12.4084 -2.4780 6.1526 20 1 11.3043 -2.4759 7.1456 21 1 13.2448 -3.6899 6.3457 22 1 13.2445 -1.2650 6.3386 23 6 3.6411 -1.2788 -0.0007 24 1 -0.3634 0.0000 1.0276 25 1 -0.3633 0.8899 -0.5139 26 1 -0.3633 -0.8900 -0.5138 27 1 0.4671 -2.4928 0.0003 28 1 1.7079 -4.6155 -0.0010 29 1 4.1678 -4.6088 -0.0105 30 1 6.1976 -1.5959 -0.5155 31 1 6.1894 -3.3758 -0.5152 32 1 7.8869 -1.5959 3.4647 33 1 7.8863 -3.3759 3.4699 34 1 10.0856 -3.3801 2.3247 35 1 10.0862 -1.6001 2.3194 36 1 13.4561 -2.4859 3.5102 37 1 4.1853 -0.3459 -0.0004 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291626500.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:42 Heat of formation + Delta-G solvation = -113.860139 kcal Electronic energy + Delta-G solvation = -19719.618875 eV Core-core repulsion = 16426.656003 eV Total energy + Delta-G solvation = -3292.962871 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.47134 -39.86983 -38.53311 -36.17508 -33.58979 -32.96336 -31.65089 -31.11159 -30.00337 -27.02789 -25.57765 -24.07167 -22.43978 -21.87700 -19.83889 -19.74769 -17.50563 -17.35613 -16.50413 -16.28146 -16.00584 -15.71386 -15.37735 -15.32076 -14.61492 -14.46432 -14.19706 -13.60529 -13.44537 -13.13962 -12.67894 -12.53962 -12.29772 -12.23422 -12.19939 -11.93517 -11.43404 -11.17520 -10.97897 -10.62605 -10.44889 -10.09261 -10.05284 -9.97215 -9.63467 -9.31490 -9.22668 -9.12871 -8.38291 -6.01866 -4.06640 0.31263 0.91761 2.04641 2.80363 3.04546 3.30857 3.38172 3.41884 3.60970 3.68636 4.33667 4.44643 4.49635 4.59706 4.71194 4.86217 4.93223 4.97068 5.02339 5.25067 5.28588 5.33705 5.45321 5.57873 5.60554 5.67041 5.92175 5.99781 6.11559 6.19355 6.19934 6.49143 6.62394 6.91323 7.18574 7.66420 7.72931 7.97713 8.24184 8.39782 9.00675 9.57493 11.09230 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.029946 B = 0.002779 C = 0.002695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.783576 B =10072.016490 C =10386.768932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.394 3.606 3 O -0.456 6.456 4 C -0.178 4.178 5 C -0.068 4.068 6 C -0.135 4.135 7 C -0.063 4.063 8 C -0.100 4.100 9 C 0.103 3.897 10 O -0.361 6.361 11 C 0.456 3.544 12 O -0.505 6.505 13 C -0.103 4.103 14 C 0.032 3.968 15 C -0.528 4.528 16 H 0.059 0.941 17 C 0.058 3.942 18 N -0.889 5.889 19 Si 0.896 3.104 20 H -0.272 1.272 21 H -0.284 1.284 22 H -0.283 1.283 23 C -0.037 4.037 24 H 0.098 0.902 25 H 0.088 0.912 26 H 0.086 0.914 27 H 0.134 0.866 28 H 0.132 0.868 29 H 0.132 0.868 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.093 0.907 33 H 0.092 0.908 34 H 0.026 0.974 35 H 0.026 0.974 36 H 0.261 0.739 37 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.236 -1.460 -7.954 27.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.257 4.257 2 C 0.272 3.728 3 O -0.331 6.331 4 C -0.179 4.179 5 C -0.086 4.086 6 C -0.153 4.153 7 C -0.081 4.081 8 C -0.101 4.101 9 C 0.029 3.971 10 O -0.280 6.280 11 C 0.300 3.700 12 O -0.391 6.391 13 C -0.140 4.140 14 C -0.005 4.005 15 C -0.566 4.566 16 H 0.078 0.922 17 C -0.144 4.144 18 N -0.528 5.528 19 Si 0.723 3.277 20 H -0.196 1.196 21 H -0.210 1.210 22 H -0.210 1.210 23 C -0.055 4.055 24 H 0.117 0.883 25 H 0.107 0.893 26 H 0.105 0.895 27 H 0.152 0.848 28 H 0.150 0.850 29 H 0.150 0.850 30 H 0.097 0.903 31 H 0.097 0.903 32 H 0.111 0.889 33 H 0.111 0.889 34 H 0.044 0.956 35 H 0.044 0.956 36 H 0.071 0.929 37 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -25.521 -0.899 -8.332 26.862 hybrid contribution 0.479 -0.165 0.720 0.881 sum -25.042 -1.064 -7.612 26.195 Atomic orbital electron populations 1.22234 0.93649 1.04906 1.04883 1.22506 0.91700 0.87559 0.70996 1.90566 1.72116 1.34295 1.36166 1.20510 0.94330 0.95004 1.08056 1.21509 1.00133 0.91468 0.95486 1.21141 0.94058 0.98347 1.01792 1.21421 0.94448 0.97895 0.94324 1.19597 0.94399 0.93372 1.02686 1.21685 0.89229 1.03565 0.82630 1.86639 1.26339 1.84890 1.30101 1.24827 0.79168 0.71581 0.94401 1.90642 1.60099 1.45003 1.43372 1.21778 1.00737 1.04054 0.87462 1.19030 0.84984 0.98918 0.97543 1.21193 0.91705 1.51655 0.92024 0.92248 1.25029 0.97227 0.95130 0.97005 1.70004 1.03516 1.50035 1.29239 0.86481 0.79143 0.77617 0.84418 1.19641 1.20969 1.20955 1.21392 0.93151 0.98393 0.92584 0.88332 0.89350 0.89518 0.84799 0.84961 0.85047 0.90326 0.90253 0.88898 0.88930 0.95568 0.95555 0.92896 0.84581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.03 9.75 36.00 0.35 -0.68 16 2 C 0.39 3.78 7.23 -30.69 -0.22 3.56 16 3 O -0.46 -6.18 17.09 5.58 0.10 -6.08 16 4 C -0.18 -1.72 5.87 -105.06 -0.62 -2.34 16 5 C -0.07 -0.48 9.36 -39.11 -0.37 -0.85 16 6 C -0.14 -0.99 10.03 -39.65 -0.40 -1.39 16 7 C -0.06 -0.58 9.69 -39.46 -0.38 -0.97 16 8 C -0.10 -1.16 5.51 -104.69 -0.58 -1.74 16 9 C 0.10 1.41 5.59 36.01 0.20 1.61 16 10 O -0.36 -6.05 10.20 -39.26 -0.40 -6.46 16 11 C 0.46 9.07 7.96 36.00 0.29 9.36 16 12 O -0.50 -11.51 15.73 -18.76 -0.30 -11.81 16 13 C -0.10 -2.12 5.75 -27.89 -0.16 -2.28 16 14 C 0.03 0.86 4.26 -27.88 -0.12 0.74 16 15 C -0.53 -14.83 9.11 -34.44 -0.31 -15.14 16 16 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 17 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 18 N -0.89 -27.13 13.29 55.43 0.74 -26.40 16 19 Si 0.90 21.54 29.54 -169.99 -5.02 16.52 16 20 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 21 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 22 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 23 C -0.04 -0.43 9.25 -39.11 -0.36 -0.79 16 24 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.09 0.25 6.47 -51.93 -0.34 -0.09 16 27 H 0.13 0.50 6.36 -52.49 -0.33 0.17 16 28 H 0.13 0.61 8.06 -52.49 -0.42 0.19 16 29 H 0.13 1.04 8.06 -52.48 -0.42 0.62 16 30 H 0.08 1.07 8.07 -51.93 -0.42 0.65 16 31 H 0.08 1.02 8.07 -51.93 -0.42 0.60 16 32 H 0.09 1.78 8.14 -51.93 -0.42 1.36 16 33 H 0.09 1.74 8.14 -51.93 -0.42 1.32 16 34 H 0.03 0.75 8.10 -51.93 -0.42 0.33 16 35 H 0.03 0.76 8.10 -51.93 -0.42 0.33 16 36 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 37 H 0.14 1.68 7.65 -52.49 -0.40 1.28 16 LS Contribution 329.55 15.07 4.97 4.97 Total: -1.00 -34.67 329.55 -7.52 -42.19 By element: Atomic # 1 Polarization: 1.23 SS G_CDS: -4.83 Total: -3.60 kcal Atomic # 6 Polarization: -6.56 SS G_CDS: -2.77 Total: -9.33 kcal Atomic # 7 Polarization: -27.13 SS G_CDS: 0.74 Total: -26.40 kcal Atomic # 8 Polarization: -23.75 SS G_CDS: -0.60 Total: -24.35 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -34.67 -7.52 -42.19 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291626500.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.672 kcal (2) G-P(sol) polarization free energy of solvation -34.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds