Wall clock time and date at job start Mon Mar 30 2020 02:14:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21249 * 120.00101 * 2 1 4 4 C 1.47166 * 119.99706 * 180.02562 * 2 1 3 5 5 C 1.39869 * 120.17588 * 359.97438 * 4 2 1 6 6 C 1.37867 * 119.82622 * 180.02562 * 5 4 2 7 7 C 1.38423 * 120.17192 * 359.74111 * 6 5 4 8 8 C 1.38385 * 120.34903 * 0.51205 * 7 6 5 9 9 C 1.50706 * 119.91321 * 179.76544 * 8 7 6 10 10 O 1.45193 * 109.46845 * 269.72694 * 9 8 7 11 11 C 1.34231 * 117.00126 * 180.02562 * 10 9 8 12 12 O 1.20833 * 119.99644 * 0.02562 * 11 10 9 13 13 C 1.50696 * 120.00640 * 179.71955 * 11 10 9 14 14 C 1.52996 * 109.47298 * 180.27355 * 13 11 10 15 15 C 1.50701 * 109.46972 * 179.97438 * 14 13 11 16 16 H 1.08001 * 120.00292 * 0.02562 * 15 14 13 17 17 C 1.37880 * 120.00289 * 180.02562 * 15 14 13 18 18 N 1.31514 * 119.99508 * 0.02562 * 17 15 14 19 19 Si 1.86795 * 120.00323 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.47159 * 0.02562 * 19 17 15 21 21 H 1.48505 * 109.47290 * 120.00035 * 19 17 15 22 22 H 1.48495 * 109.47273 * 239.99838 * 19 17 15 23 23 C 1.37902 * 120.16973 * 359.49138 * 8 7 6 24 24 H 1.09000 * 109.47353 * 269.99832 * 1 2 3 25 25 H 1.08997 * 109.47224 * 30.00530 * 1 2 3 26 26 H 1.09002 * 109.47012 * 150.00141 * 1 2 3 27 27 H 1.07996 * 120.08482 * 359.97438 * 5 4 2 28 28 H 1.08000 * 119.91307 * 180.02562 * 6 5 4 29 29 H 1.08003 * 119.82420 * 180.27922 * 7 6 5 30 30 H 1.08997 * 109.46698 * 149.72676 * 9 8 7 31 31 H 1.08997 * 109.46779 * 29.72795 * 9 8 7 32 32 H 1.09000 * 109.47190 * 300.28291 * 13 11 10 33 33 H 1.09006 * 109.46468 * 60.27874 * 13 11 10 34 34 H 1.08994 * 109.47515 * 300.00215 * 14 13 11 35 35 H 1.09006 * 109.46938 * 60.00806 * 14 13 11 36 36 H 0.96999 * 119.99800 * 180.02562 * 18 17 15 37 37 H 1.07998 * 120.08782 * 180.23137 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1132 1.0500 0.0000 4 6 2.2428 -1.2745 -0.0006 5 6 1.5471 -2.4879 -0.0006 6 6 2.2436 -3.6777 -0.0006 7 6 3.6278 -3.6735 -0.0060 8 6 4.3234 -2.4772 -0.0007 9 6 5.8305 -2.4841 -0.0014 10 8 6.3149 -2.4861 1.3674 11 6 7.6457 -2.4916 1.5428 12 8 8.3814 -2.4942 0.5842 13 6 8.2224 -2.4876 2.9350 14 6 9.7502 -2.4884 2.8543 15 6 10.3268 -2.4838 4.2466 16 1 9.6693 -2.4809 5.1034 17 6 11.6937 -2.4831 4.4268 18 7 12.4944 -2.4860 3.3835 19 14 12.4084 -2.4780 6.1526 20 1 11.3043 -2.4759 7.1456 21 1 13.2448 -3.6899 6.3457 22 1 13.2445 -1.2650 6.3386 23 6 3.6411 -1.2788 -0.0007 24 1 -0.3634 0.0000 1.0276 25 1 -0.3633 0.8899 -0.5139 26 1 -0.3633 -0.8900 -0.5138 27 1 0.4671 -2.4928 0.0003 28 1 1.7079 -4.6155 -0.0010 29 1 4.1678 -4.6088 -0.0105 30 1 6.1976 -1.5959 -0.5155 31 1 6.1894 -3.3758 -0.5152 32 1 7.8869 -1.5959 3.4647 33 1 7.8863 -3.3759 3.4699 34 1 10.0856 -3.3801 2.3247 35 1 10.0862 -1.6001 2.3194 36 1 13.4561 -2.4859 3.5102 37 1 4.1853 -0.3459 -0.0004 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291626500.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:41 Heat of formation + Delta-G solvation = -134.346955 kcal Electronic energy + Delta-G solvation = -19720.507250 eV Core-core repulsion = 16426.656003 eV Total energy + Delta-G solvation = -3293.851246 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.63726 -40.98820 -39.38024 -37.64715 -35.67012 -33.84606 -33.10859 -32.32673 -30.61094 -28.48936 -27.13261 -24.78845 -24.14837 -22.81613 -21.52537 -20.52458 -19.13035 -18.34734 -18.05060 -17.77421 -16.99148 -16.69979 -16.59326 -16.48145 -16.04064 -15.55861 -15.04847 -14.88214 -14.59409 -14.26607 -14.11044 -13.81263 -13.49404 -13.21700 -13.05672 -12.91017 -12.87098 -12.72604 -12.49409 -12.15621 -12.04187 -11.78544 -11.77603 -11.48340 -11.28319 -10.82124 -10.60149 -10.03505 -9.99191 -8.21519 -6.35360 -0.40248 0.14591 1.18507 1.31928 1.42733 1.43707 1.57311 1.81837 2.42138 2.79249 3.02742 3.12358 3.48749 3.74157 3.89943 3.99416 4.04955 4.11302 4.22964 4.32720 4.41767 4.43582 4.46581 4.62195 4.68309 4.86193 4.88329 4.90331 5.11817 5.25047 5.30280 5.39221 5.43123 5.45518 5.52904 5.78965 5.83153 6.11446 6.50426 6.74360 6.83927 7.34947 8.91458 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.029946 B = 0.002779 C = 0.002695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.783576 B =10072.016490 C =10386.768932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.392 3.608 3 O -0.511 6.511 4 C -0.194 4.194 5 C -0.047 4.047 6 C -0.127 4.127 7 C -0.066 4.066 8 C -0.121 4.121 9 C 0.099 3.901 10 O -0.354 6.354 11 C 0.465 3.535 12 O -0.543 6.543 13 C -0.094 4.094 14 C 0.038 3.962 15 C -0.543 4.543 16 H 0.077 0.923 17 C -0.005 4.005 18 N -0.936 5.936 19 Si 0.975 3.025 20 H -0.253 1.253 21 H -0.279 1.279 22 H -0.281 1.281 23 C -0.061 4.061 24 H 0.117 0.883 25 H 0.088 0.912 26 H 0.119 0.881 27 H 0.179 0.821 28 H 0.171 0.829 29 H 0.145 0.855 30 H 0.068 0.932 31 H 0.087 0.913 32 H 0.113 0.887 33 H 0.118 0.882 34 H -0.008 1.008 35 H -0.012 1.012 36 H 0.264 0.736 37 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.734 -3.037 -6.485 30.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C 0.274 3.726 3 O -0.391 6.391 4 C -0.195 4.195 5 C -0.065 4.065 6 C -0.145 4.145 7 C -0.084 4.084 8 C -0.121 4.121 9 C 0.026 3.974 10 O -0.271 6.271 11 C 0.311 3.689 12 O -0.433 6.433 13 C -0.131 4.131 14 C 0.001 3.999 15 C -0.581 4.581 16 H 0.095 0.905 17 C -0.203 4.203 18 N -0.576 5.576 19 Si 0.799 3.201 20 H -0.177 1.177 21 H -0.205 1.205 22 H -0.207 1.207 23 C -0.080 4.080 24 H 0.135 0.865 25 H 0.107 0.893 26 H 0.137 0.863 27 H 0.197 0.803 28 H 0.189 0.811 29 H 0.163 0.837 30 H 0.086 0.914 31 H 0.105 0.895 32 H 0.131 0.869 33 H 0.136 0.864 34 H 0.011 0.989 35 H 0.007 0.993 36 H 0.073 0.927 37 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -29.075 -2.492 -6.857 29.976 hybrid contribution 1.446 0.291 0.172 1.485 sum -27.629 -2.200 -6.685 28.511 Atomic orbital electron populations 1.22283 0.89573 1.06578 1.06458 1.23270 0.93866 0.86619 0.68868 1.90554 1.73556 1.35953 1.39015 1.20740 0.93497 0.96587 1.08635 1.22004 1.02241 0.89913 0.92328 1.21607 0.93082 1.00056 0.99748 1.21687 0.95840 0.97257 0.93648 1.19439 0.92705 0.94512 1.05408 1.21921 0.91221 1.03499 0.80742 1.86597 1.24143 1.84034 1.32325 1.24552 0.80027 0.70734 0.93623 1.90631 1.61275 1.46929 1.44424 1.21531 0.96755 1.06231 0.88607 1.18809 0.89207 0.95508 0.96410 1.21666 0.92408 1.51079 0.92946 0.90461 1.26118 0.97857 0.94497 1.01826 1.70167 1.03969 1.51274 1.32183 0.85244 0.78532 0.77600 0.78705 1.17687 1.20461 1.20662 1.21350 0.94638 0.97558 0.94450 0.86460 0.89289 0.86275 0.80335 0.81124 0.83742 0.91351 0.89469 0.86914 0.86359 0.98940 0.99309 0.92720 0.87116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.36 9.75 71.24 0.69 -0.67 16 2 C 0.39 7.19 7.23 28.03 0.20 7.39 16 3 O -0.51 -14.53 17.09 -2.93 -0.05 -14.58 16 4 C -0.19 -3.49 5.87 -20.15 -0.12 -3.61 16 5 C -0.05 -0.47 9.36 22.58 0.21 -0.26 16 6 C -0.13 -1.30 10.03 22.23 0.22 -1.08 16 7 C -0.07 -1.09 9.69 22.35 0.22 -0.87 16 8 C -0.12 -2.79 5.51 -19.91 -0.11 -2.90 16 9 C 0.10 2.83 5.59 71.24 0.40 3.23 16 10 O -0.35 -12.03 10.20 -51.42 -0.52 -12.55 16 11 C 0.47 19.01 7.96 71.23 0.57 19.57 16 12 O -0.54 -26.06 15.73 21.94 0.35 -25.72 16 13 C -0.09 -3.90 5.75 29.85 0.17 -3.73 16 14 C 0.04 2.09 4.26 29.85 0.13 2.22 16 15 C -0.54 -30.74 9.11 25.60 0.23 -30.51 16 16 H 0.08 4.00 7.74 -2.91 -0.02 3.98 16 17 C -0.01 -0.30 5.46 84.66 0.46 0.16 16 18 N -0.94 -58.78 13.29 21.45 0.28 -58.50 16 19 Si 0.98 44.16 29.54 68.60 2.03 46.19 16 20 H -0.25 -10.63 7.11 99.48 0.71 -9.92 16 21 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 22 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 23 C -0.06 -1.49 9.25 22.58 0.21 -1.28 16 24 H 0.12 0.47 8.14 -2.39 -0.02 0.45 16 25 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 26 H 0.12 0.05 6.47 -2.39 -0.02 0.04 16 27 H 0.18 0.15 6.36 -2.91 -0.02 0.13 16 28 H 0.17 0.52 8.06 -2.91 -0.02 0.49 16 29 H 0.14 1.93 8.06 -2.91 -0.02 1.91 16 30 H 0.07 2.05 8.07 -2.39 -0.02 2.03 16 31 H 0.09 2.31 8.07 -2.39 -0.02 2.29 16 32 H 0.11 4.24 8.14 -2.39 -0.02 4.22 16 33 H 0.12 4.31 8.14 -2.38 -0.02 4.29 16 34 H -0.01 -0.48 8.10 -2.39 -0.02 -0.50 16 35 H -0.01 -0.71 8.10 -2.38 -0.02 -0.73 16 36 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 37 H 0.11 3.11 7.65 -2.91 -0.02 3.09 16 Total: -1.00 -80.44 329.55 6.64 -73.80 By element: Atomic # 1 Polarization: 2.63 SS G_CDS: 1.07 Total: 3.69 kcal Atomic # 6 Polarization: -15.81 SS G_CDS: 3.49 Total: -12.33 kcal Atomic # 7 Polarization: -58.78 SS G_CDS: 0.28 Total: -58.50 kcal Atomic # 8 Polarization: -52.63 SS G_CDS: -0.23 Total: -52.86 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.19 kcal Total: -80.44 6.64 -73.80 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291626500.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.546 kcal (2) G-P(sol) polarization free energy of solvation -80.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds