Wall clock time and date at job start Mon Mar 30 2020 01:38:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 120.00227 * 2 1 4 4 H 1.48496 * 109.47018 * 270.00323 * 3 2 1 5 5 H 1.48497 * 109.46622 * 30.00319 * 3 2 1 6 6 H 1.48495 * 109.46855 * 150.00052 * 3 2 1 7 7 C 1.37877 * 119.99713 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00622 * 359.97438 * 7 2 1 9 9 C 1.50704 * 119.99633 * 179.97438 * 7 2 1 10 10 C 1.53001 * 109.46853 * 179.97438 * 9 7 2 11 11 C 1.50702 * 109.47301 * 179.97438 * 10 9 7 12 12 O 1.20838 * 119.99773 * 359.97438 * 11 10 9 13 13 O 1.34237 * 120.00471 * 179.97438 * 11 10 9 14 14 C 1.35990 * 117.00211 * 185.77480 * 13 11 10 15 15 C 1.38742 * 120.06628 * 248.97701 * 14 13 11 16 16 C 1.37928 * 119.89835 * 180.08780 * 15 14 13 17 17 C 1.39143 * 120.29245 * 0.02562 * 16 15 14 18 18 C 1.38370 * 119.78194 * 359.84459 * 17 16 15 19 19 C 1.38484 * 119.88403 * 0.21345 * 18 17 16 20 20 C 1.50783 * 121.41159 * 180.30811 * 18 17 16 21 21 C 1.53086 * 109.69635 * 342.20914 * 20 18 17 22 22 C 1.53410 * 108.26820 * 48.23042 * 21 20 18 23 23 O 1.35924 * 118.43416 * 179.82296 * 17 16 15 24 24 H 0.97004 * 119.99945 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.47572 * 60.00186 * 9 7 2 26 26 H 1.09003 * 109.47243 * 299.99512 * 9 7 2 27 27 H 1.08998 * 109.47578 * 59.99868 * 10 9 7 28 28 H 1.08994 * 109.47411 * 299.99673 * 10 9 7 29 29 H 1.07997 * 120.05106 * 0.10396 * 15 14 13 30 30 H 1.07996 * 119.85001 * 180.02562 * 16 15 14 31 31 H 1.08000 * 119.85722 * 179.83979 * 19 18 17 32 32 H 1.08993 * 109.44053 * 102.24638 * 20 18 17 33 33 H 1.08995 * 109.43608 * 222.12654 * 20 18 17 34 34 H 1.09004 * 109.70197 * 288.54433 * 21 20 18 35 35 H 1.09000 * 109.72241 * 167.92487 * 21 20 18 36 36 H 1.09001 * 109.68201 * 175.54904 * 22 21 20 37 37 H 1.09001 * 109.68065 * 55.02868 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0214 -2.6366 -0.0010 11 6 5.5285 -2.6367 -0.0022 12 8 6.1327 -1.5902 -0.0036 13 8 6.1997 -3.7992 -0.0018 14 6 7.5525 -3.7310 0.1190 15 6 8.3641 -4.0704 -0.9539 16 6 9.7358 -4.0017 -0.8270 17 6 10.3101 -3.5939 0.3730 18 6 9.5001 -3.2530 1.4417 19 6 8.1230 -3.3234 1.3138 20 6 10.0830 -2.7997 2.7564 21 6 11.5568 -3.2063 2.8348 22 6 12.2408 -2.7903 1.5261 23 8 11.6658 -3.5435 0.4574 24 1 -0.4850 0.8401 0.0004 25 1 3.8752 -0.6805 0.8888 26 1 3.8745 -0.6801 -0.8912 27 1 3.6578 -3.1507 -0.8907 28 1 3.6585 -3.1502 0.8892 29 1 7.9225 -4.3876 -1.8870 30 1 10.3668 -4.2657 -1.6628 31 1 7.4912 -3.0597 2.1491 32 1 10.0018 -1.7156 2.8347 33 1 9.5344 -3.2641 3.5757 34 1 11.6339 -4.2861 2.9626 35 1 12.0335 -2.7014 3.6750 36 1 13.3091 -2.9977 1.5881 37 1 12.0829 -1.7260 1.3516 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291649243.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:03 Heat of formation + Delta-G solvation = -104.780640 kcal Electronic energy + Delta-G solvation = -20563.068282 eV Core-core repulsion = 17270.499128 eV Total energy + Delta-G solvation = -3292.569155 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.26988 -40.37637 -37.72769 -36.19285 -34.57043 -33.66923 -31.51663 -30.80660 -29.85606 -26.76826 -25.87146 -23.98185 -23.20111 -21.98983 -20.36391 -19.70662 -18.01872 -17.83658 -17.36301 -17.01900 -15.98549 -15.76188 -15.53094 -14.72508 -14.53869 -14.20331 -14.17774 -13.83647 -13.51729 -13.37207 -13.04229 -12.84550 -12.60015 -12.34928 -11.96450 -11.54339 -11.41737 -11.06809 -11.06070 -10.83197 -10.59453 -10.37838 -10.20821 -10.03164 -9.77122 -9.29677 -9.00656 -8.58602 -8.16680 -6.10025 -4.10258 1.04859 1.12249 2.54838 2.87000 3.14537 3.32218 3.39247 3.47886 3.64555 4.28926 4.36280 4.43537 4.44573 4.59247 4.83335 4.92393 5.04980 5.14988 5.18188 5.24609 5.29433 5.30727 5.49807 5.62958 5.68686 5.80165 5.86055 5.92926 6.03497 6.15811 6.23751 6.36430 6.55295 6.84577 7.18372 7.21081 7.25799 7.67189 8.19533 8.43623 8.92119 9.51522 11.02496 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.030682 B = 0.003534 C = 0.003363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.357945 B = 7920.365072 C = 8324.553455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.072 3.928 3 Si 0.877 3.123 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.262 1.262 7 C -0.528 4.528 8 H 0.076 0.924 9 C -0.002 4.002 10 C -0.093 4.093 11 C 0.453 3.547 12 O -0.493 6.493 13 O -0.299 6.299 14 C 0.064 3.936 15 C -0.088 4.088 16 C -0.133 4.133 17 C 0.125 3.875 18 C -0.145 4.145 19 C -0.090 4.090 20 C -0.079 4.079 21 C -0.159 4.159 22 C 0.060 3.940 23 O -0.315 6.315 24 H 0.265 0.735 25 H 0.026 0.974 26 H 0.022 0.978 27 H 0.102 0.898 28 H 0.102 0.898 29 H 0.139 0.861 30 H 0.138 0.862 31 H 0.130 0.870 32 H 0.081 0.919 33 H 0.084 0.916 34 H 0.078 0.922 35 H 0.085 0.915 36 H 0.107 0.893 37 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.993 -8.542 3.737 25.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.130 4.130 3 Si 0.704 3.296 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.187 1.187 7 C -0.566 4.566 8 H 0.094 0.906 9 C -0.040 4.040 10 C -0.130 4.130 11 C 0.297 3.703 12 O -0.377 6.377 13 O -0.215 6.215 14 C 0.022 3.978 15 C -0.107 4.107 16 C -0.152 4.152 17 C 0.080 3.920 18 C -0.146 4.146 19 C -0.109 4.109 20 C -0.116 4.116 21 C -0.196 4.196 22 C -0.016 4.016 23 O -0.230 6.230 24 H 0.074 0.926 25 H 0.044 0.956 26 H 0.040 0.960 27 H 0.120 0.880 28 H 0.120 0.880 29 H 0.157 0.843 30 H 0.156 0.844 31 H 0.148 0.852 32 H 0.099 0.901 33 H 0.103 0.897 34 H 0.097 0.903 35 H 0.104 0.896 36 H 0.125 0.875 37 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 24.173 -8.162 3.607 25.768 hybrid contribution 0.287 1.070 0.214 1.129 sum 24.460 -7.092 3.820 25.752 Atomic orbital electron populations 1.69901 1.06266 1.27113 1.50495 1.24948 0.94722 0.99184 0.94192 0.86810 0.80543 0.83449 0.78837 1.20113 1.21267 1.18655 1.21011 0.88723 0.94850 1.51977 0.90566 1.19502 0.97020 0.89446 0.97999 1.21589 0.82536 1.03751 1.05155 1.25244 0.92686 0.80782 0.71565 1.90653 1.70375 1.32481 1.44193 1.84749 1.16947 1.36198 1.83635 1.18420 0.81903 1.03578 0.93873 1.20907 0.92306 0.99638 0.97836 1.20408 0.93943 1.04805 0.96028 1.18661 0.82295 0.97703 0.93296 1.19600 0.93117 1.06002 0.95842 1.21063 0.94168 0.98259 0.97386 1.20497 0.95205 1.01780 0.94158 1.22238 0.96045 1.02941 0.98414 1.22984 0.97849 0.95434 0.85291 1.86001 1.17352 1.69153 1.50456 0.92552 0.95593 0.95958 0.88011 0.88004 0.84333 0.84440 0.85239 0.90094 0.89732 0.90333 0.89597 0.87473 0.91677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.43 13.96 55.43 0.77 -26.66 16 2 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 3 Si 0.88 22.06 27.47 -169.99 -4.67 17.39 16 4 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.26 -6.53 6.54 56.52 0.37 -6.16 16 7 C -0.53 -14.75 9.66 -34.44 -0.33 -15.09 16 8 H 0.08 2.22 7.99 -52.49 -0.42 1.80 16 9 C 0.00 -0.05 3.33 -27.88 -0.09 -0.15 16 10 C -0.09 -1.79 5.75 -27.88 -0.16 -1.95 16 11 C 0.45 8.55 7.73 36.01 0.28 8.83 16 12 O -0.49 -10.69 15.39 -18.76 -0.29 -10.98 16 13 O -0.30 -5.00 10.04 -23.75 -0.24 -5.24 16 14 C 0.06 0.99 5.27 -39.29 -0.21 0.78 16 15 C -0.09 -1.18 9.98 -39.51 -0.39 -1.57 16 16 C -0.13 -1.62 9.93 -39.36 -0.39 -2.01 16 17 C 0.13 1.57 6.47 -39.20 -0.25 1.32 16 18 C -0.14 -1.81 5.75 -104.44 -0.60 -2.41 16 19 C -0.09 -1.30 8.94 -39.38 -0.35 -1.65 16 20 C -0.08 -0.74 5.86 -27.80 -0.16 -0.90 16 21 C -0.16 -1.13 6.20 -26.47 -0.16 -1.29 16 22 C 0.06 0.46 7.02 37.37 0.26 0.72 16 23 O -0.32 -3.51 10.27 -19.50 -0.20 -3.71 16 24 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 25 H 0.03 0.64 7.16 -51.93 -0.37 0.27 16 26 H 0.02 0.55 7.53 -51.93 -0.39 0.16 16 27 H 0.10 1.80 8.14 -51.93 -0.42 1.38 16 28 H 0.10 1.80 8.14 -51.93 -0.42 1.38 16 29 H 0.14 1.57 8.06 -52.49 -0.42 1.15 16 30 H 0.14 1.35 8.06 -52.49 -0.42 0.93 16 31 H 0.13 1.79 8.06 -52.49 -0.42 1.37 16 32 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.11 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 315.55 15.07 4.76 4.76 Total: -1.00 -32.97 315.55 -7.54 -40.50 By element: Atomic # 1 Polarization: 2.33 SS G_CDS: -5.00 Total: -2.67 kcal Atomic # 6 Polarization: -10.72 SS G_CDS: -2.67 Total: -13.39 kcal Atomic # 7 Polarization: -27.43 SS G_CDS: 0.77 Total: -26.66 kcal Atomic # 8 Polarization: -19.20 SS G_CDS: -0.73 Total: -19.93 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -4.67 Total: 17.39 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -32.97 -7.54 -40.50 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291649243.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.279 kcal (2) G-P(sol) polarization free energy of solvation -32.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds