Wall clock time and date at job start Mon Mar 30 2020 01:38:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86803 * 120.00227 * 2 1 4 4 H 1.48496 * 109.47018 * 270.00323 * 3 2 1 5 5 H 1.48497 * 109.46622 * 30.00319 * 3 2 1 6 6 H 1.48495 * 109.46855 * 150.00052 * 3 2 1 7 7 C 1.37877 * 119.99713 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00622 * 359.97438 * 7 2 1 9 9 C 1.50704 * 119.99633 * 179.97438 * 7 2 1 10 10 C 1.53001 * 109.46853 * 179.97438 * 9 7 2 11 11 C 1.50702 * 109.47301 * 179.97438 * 10 9 7 12 12 O 1.20838 * 119.99773 * 359.97438 * 11 10 9 13 13 O 1.34237 * 120.00471 * 179.97438 * 11 10 9 14 14 C 1.35990 * 117.00211 * 185.77480 * 13 11 10 15 15 C 1.38742 * 120.06628 * 248.97701 * 14 13 11 16 16 C 1.37928 * 119.89835 * 180.08780 * 15 14 13 17 17 C 1.39143 * 120.29245 * 0.02562 * 16 15 14 18 18 C 1.38370 * 119.78194 * 359.84459 * 17 16 15 19 19 C 1.38484 * 119.88403 * 0.21345 * 18 17 16 20 20 C 1.50783 * 121.41159 * 180.30811 * 18 17 16 21 21 C 1.53086 * 109.69635 * 342.20914 * 20 18 17 22 22 C 1.53410 * 108.26820 * 48.23042 * 21 20 18 23 23 O 1.35924 * 118.43416 * 179.82296 * 17 16 15 24 24 H 0.97004 * 119.99945 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.47572 * 60.00186 * 9 7 2 26 26 H 1.09003 * 109.47243 * 299.99512 * 9 7 2 27 27 H 1.08998 * 109.47578 * 59.99868 * 10 9 7 28 28 H 1.08994 * 109.47411 * 299.99673 * 10 9 7 29 29 H 1.07997 * 120.05106 * 0.10396 * 15 14 13 30 30 H 1.07996 * 119.85001 * 180.02562 * 16 15 14 31 31 H 1.08000 * 119.85722 * 179.83979 * 19 18 17 32 32 H 1.08993 * 109.44053 * 102.24638 * 20 18 17 33 33 H 1.08995 * 109.43608 * 222.12654 * 20 18 17 34 34 H 1.09004 * 109.70197 * 288.54433 * 21 20 18 35 35 H 1.09000 * 109.72241 * 167.92487 * 21 20 18 36 36 H 1.09001 * 109.68201 * 175.54904 * 22 21 20 37 37 H 1.09001 * 109.68065 * 55.02868 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0214 -2.6366 -0.0010 11 6 5.5285 -2.6367 -0.0022 12 8 6.1327 -1.5902 -0.0036 13 8 6.1997 -3.7992 -0.0018 14 6 7.5525 -3.7310 0.1190 15 6 8.3641 -4.0704 -0.9539 16 6 9.7358 -4.0017 -0.8270 17 6 10.3101 -3.5939 0.3730 18 6 9.5001 -3.2530 1.4417 19 6 8.1230 -3.3234 1.3138 20 6 10.0830 -2.7997 2.7564 21 6 11.5568 -3.2063 2.8348 22 6 12.2408 -2.7903 1.5261 23 8 11.6658 -3.5435 0.4574 24 1 -0.4850 0.8401 0.0004 25 1 3.8752 -0.6805 0.8888 26 1 3.8745 -0.6801 -0.8912 27 1 3.6578 -3.1507 -0.8907 28 1 3.6585 -3.1502 0.8892 29 1 7.9225 -4.3876 -1.8870 30 1 10.3668 -4.2657 -1.6628 31 1 7.4912 -3.0597 2.1491 32 1 10.0018 -1.7156 2.8347 33 1 9.5344 -3.2641 3.5757 34 1 11.6339 -4.2861 2.9626 35 1 12.0335 -2.7014 3.6750 36 1 13.3091 -2.9977 1.5881 37 1 12.0829 -1.7260 1.3516 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291649243.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:03 Heat of formation + Delta-G solvation = -123.385964 kcal Electronic energy + Delta-G solvation = -20563.875070 eV Core-core repulsion = 17270.499128 eV Total energy + Delta-G solvation = -3293.375942 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.46155 -41.40313 -38.93765 -37.38931 -35.66500 -35.32506 -33.48949 -31.65582 -30.92871 -28.51852 -26.73997 -25.09816 -24.26407 -23.37813 -21.80937 -20.84675 -19.43564 -18.87732 -18.78408 -18.28267 -17.58258 -16.83643 -16.48611 -16.28656 -15.56290 -15.55478 -15.23386 -15.05607 -14.69715 -14.61865 -14.34328 -14.13987 -13.88150 -13.48001 -13.26921 -13.04998 -12.92389 -12.27486 -12.14369 -12.05382 -11.85571 -11.82227 -11.74816 -11.61665 -11.45461 -11.37400 -10.80217 -9.97687 -9.16647 -8.33019 -6.37352 -0.01341 0.13280 1.07669 1.33391 1.35475 1.48737 1.68281 2.28120 2.33224 2.60013 3.02382 3.50359 3.60312 3.68471 3.77771 3.89749 4.05731 4.17359 4.25663 4.34144 4.37328 4.40965 4.55379 4.59268 4.70601 4.80811 4.88258 4.93778 4.97039 5.11873 5.18119 5.24053 5.25621 5.32878 5.34927 5.54710 5.65915 6.19962 6.33969 6.68457 6.80533 7.27846 8.82523 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.030682 B = 0.003534 C = 0.003363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.357945 B = 7920.365072 C = 8324.553455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C 0.016 3.984 3 Si 0.938 3.062 4 H -0.268 1.268 5 H -0.278 1.278 6 H -0.259 1.259 7 C -0.531 4.531 8 H 0.053 0.947 9 C 0.002 3.998 10 C -0.088 4.088 11 C 0.463 3.537 12 O -0.524 6.524 13 O -0.291 6.291 14 C 0.025 3.975 15 C -0.092 4.092 16 C -0.135 4.135 17 C 0.124 3.876 18 C -0.151 4.151 19 C -0.104 4.104 20 C -0.084 4.084 21 C -0.152 4.152 22 C 0.049 3.951 23 O -0.323 6.323 24 H 0.268 0.732 25 H 0.018 0.982 26 H 0.016 0.984 27 H 0.119 0.881 28 H 0.118 0.882 29 H 0.155 0.845 30 H 0.162 0.838 31 H 0.126 0.874 32 H 0.083 0.917 33 H 0.092 0.908 34 H 0.077 0.923 35 H 0.114 0.886 36 H 0.137 0.863 37 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.730 -8.525 4.041 28.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.182 4.182 3 Si 0.762 3.238 4 H -0.193 1.193 5 H -0.203 1.203 6 H -0.183 1.183 7 C -0.569 4.569 8 H 0.071 0.929 9 C -0.035 4.035 10 C -0.125 4.125 11 C 0.309 3.691 12 O -0.412 6.412 13 O -0.206 6.206 14 C -0.016 4.016 15 C -0.110 4.110 16 C -0.154 4.154 17 C 0.078 3.922 18 C -0.152 4.152 19 C -0.122 4.122 20 C -0.121 4.121 21 C -0.189 4.189 22 C -0.025 4.025 23 O -0.237 6.237 24 H 0.078 0.922 25 H 0.036 0.964 26 H 0.035 0.965 27 H 0.137 0.863 28 H 0.136 0.864 29 H 0.172 0.828 30 H 0.179 0.821 31 H 0.144 0.856 32 H 0.101 0.899 33 H 0.110 0.890 34 H 0.096 0.904 35 H 0.132 0.868 36 H 0.155 0.845 37 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 26.927 -8.174 3.915 28.412 hybrid contribution -0.458 0.971 0.142 1.083 sum 26.470 -7.203 4.057 27.730 Atomic orbital electron populations 1.70017 1.07836 1.28232 1.52086 1.25785 0.95489 1.02850 0.94123 0.85836 0.79287 0.79433 0.79225 1.19296 1.20348 1.18323 1.21317 0.90758 0.93984 1.50868 0.92865 1.19334 0.94486 0.92545 0.97168 1.21390 0.83278 1.00952 1.06874 1.24936 0.92429 0.80956 0.70759 1.90634 1.70975 1.33687 1.45870 1.84710 1.18120 1.34660 1.83129 1.18783 0.81164 1.06275 0.95348 1.21123 0.92749 0.99222 0.97879 1.20718 0.93742 1.04066 0.96839 1.18874 0.83182 0.96796 0.93316 1.19941 0.92456 1.05377 0.97403 1.21185 0.95197 0.98759 0.97105 1.20621 0.96845 1.01918 0.92671 1.22237 0.94394 1.03164 0.99119 1.23348 0.99288 0.95282 0.84595 1.86002 1.16305 1.69512 1.51899 0.92248 0.96402 0.96550 0.86340 0.86360 0.82779 0.82079 0.85611 0.89861 0.88994 0.90419 0.86812 0.84516 0.91478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.16 13.96 21.45 0.30 -57.86 16 2 C 0.02 0.91 5.47 84.65 0.46 1.37 16 3 Si 0.94 45.49 27.47 68.60 1.88 47.37 16 4 H -0.27 -12.58 7.11 99.48 0.71 -11.88 16 5 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 6 H -0.26 -12.34 6.54 99.48 0.65 -11.69 16 7 C -0.53 -29.98 9.66 25.60 0.25 -29.73 16 8 H 0.05 3.17 7.99 -2.91 -0.02 3.15 16 9 C 0.00 0.11 3.33 29.85 0.10 0.21 16 10 C -0.09 -3.32 5.75 29.85 0.17 -3.15 16 11 C 0.46 17.31 7.73 71.24 0.55 17.86 16 12 O -0.52 -22.69 15.39 21.93 0.34 -22.35 16 13 O -0.29 -9.61 10.04 4.06 0.04 -9.57 16 14 C 0.03 0.78 5.27 22.46 0.12 0.90 16 15 C -0.09 -2.34 9.98 22.32 0.22 -2.12 16 16 C -0.14 -3.07 9.93 22.41 0.22 -2.84 16 17 C 0.12 2.90 6.47 22.52 0.15 3.05 16 18 C -0.15 -3.62 5.75 -19.75 -0.11 -3.73 16 19 C -0.10 -2.97 8.94 22.40 0.20 -2.77 16 20 C -0.08 -1.41 5.86 29.90 0.18 -1.23 16 21 C -0.15 -1.71 6.20 30.76 0.19 -1.52 16 22 C 0.05 0.61 7.02 72.12 0.51 1.12 16 23 O -0.32 -6.43 10.27 -92.70 -0.95 -7.38 16 24 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 25 H 0.02 0.88 7.16 -2.39 -0.02 0.86 16 26 H 0.02 0.80 7.53 -2.39 -0.02 0.78 16 27 H 0.12 4.09 8.14 -2.39 -0.02 4.07 16 28 H 0.12 4.08 8.14 -2.39 -0.02 4.06 16 29 H 0.15 3.30 8.06 -2.91 -0.02 3.27 16 30 H 0.16 2.78 8.06 -2.91 -0.02 2.75 16 31 H 0.13 3.54 8.06 -2.91 -0.02 3.52 16 32 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.08 0.92 8.14 -2.38 -0.02 0.90 16 35 H 0.11 0.68 8.14 -2.39 -0.02 0.66 16 36 H 0.14 0.89 8.14 -2.39 -0.02 0.88 16 37 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 Total: -1.00 -70.92 315.55 5.82 -65.10 By element: Atomic # 1 Polarization: 6.28 SS G_CDS: 1.01 Total: 7.29 kcal Atomic # 6 Polarization: -25.80 SS G_CDS: 3.20 Total: -22.60 kcal Atomic # 7 Polarization: -58.16 SS G_CDS: 0.30 Total: -57.86 kcal Atomic # 8 Polarization: -38.73 SS G_CDS: -0.57 Total: -39.30 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 1.88 Total: 47.37 kcal Total: -70.92 5.82 -65.10 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291649243.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.283 kcal (2) G-P(sol) polarization free energy of solvation -70.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds