Wall clock time and date at job start Mon Mar 30 2020 01:40:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30869 * 1 3 3 Si 1.86797 * 119.99920 * 2 1 4 4 H 1.48501 * 109.46821 * 239.99656 * 3 2 1 5 5 H 1.48500 * 109.47316 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47328 * 119.99998 * 3 2 1 7 7 C 1.39907 * 120.00055 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00202 * 197.40366 * 7 2 1 9 9 C 1.41225 * 119.99979 * 17.40171 * 7 2 1 10 10 C 1.40831 * 120.18208 * 204.83592 * 9 7 2 11 11 C 1.36444 * 119.80588 * 180.02562 * 10 9 7 12 12 C 1.39282 * 120.19273 * 359.97438 * 11 10 9 13 13 O 1.35735 * 119.81739 * 179.97438 * 12 11 10 14 14 C 1.34595 * 117.00268 * 84.71815 * 13 12 11 15 15 O 1.21439 * 119.99923 * 355.24549 * 14 13 12 16 16 O 1.34546 * 120.00258 * 175.23878 * 14 13 12 17 17 C 1.45199 * 117.00142 * 179.97438 * 16 14 13 18 18 C 1.54262 * 110.03693 * 267.91218 * 17 16 14 19 19 C 1.54962 * 104.16127 * 217.13320 * 18 17 16 20 20 C 1.54893 * 102.77523 * 37.88927 * 19 18 17 21 21 C 1.53870 * 110.03258 * 150.69152 * 17 16 14 22 22 C 1.39285 * 120.36645 * 0.25573 * 12 11 10 23 23 C 1.36454 * 120.18708 * 359.48422 * 22 12 11 24 24 H 0.96994 * 119.99892 * 359.97438 * 1 2 3 25 25 H 1.08002 * 120.09233 * 0.02562 * 10 9 7 26 26 H 1.08006 * 119.90611 * 179.97438 * 11 10 9 27 27 H 1.09006 * 110.01531 * 29.30769 * 17 16 14 28 28 H 1.08998 * 110.48656 * 335.78455 * 18 17 16 29 29 H 1.09003 * 110.48435 * 98.42473 * 18 17 16 30 30 H 1.08993 * 110.72520 * 279.57395 * 19 18 17 31 31 H 1.09003 * 110.92231 * 156.29614 * 19 18 17 32 32 H 1.09003 * 110.48345 * 203.40210 * 20 19 18 33 33 H 1.09006 * 110.59895 * 80.81336 * 20 19 18 34 34 H 1.09003 * 110.03877 * 238.57417 * 21 17 16 35 35 H 1.09001 * 110.03580 * 359.95446 * 21 17 16 36 36 H 1.08001 * 119.90350 * 179.71815 * 22 12 11 37 37 H 1.07999 * 120.09449 * 180.23322 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 3.0965 1.6963 -1.2125 5 1 1.2777 2.7465 -0.0006 6 1 3.0964 1.6965 1.2125 7 6 2.0082 -1.2116 0.0005 8 1 3.0512 -1.2329 0.2803 9 6 1.3506 -2.4068 -0.3647 10 6 1.8233 -3.6473 0.1056 11 6 1.1824 -4.7973 -0.2525 12 6 0.0633 -4.7470 -1.0802 13 8 -0.5681 -5.8958 -1.4321 14 6 -1.4848 -6.3773 -0.5722 15 8 -1.6529 -5.8364 0.5019 16 8 -2.2151 -7.4579 -0.9028 17 6 -3.1845 -7.9223 0.0734 18 6 -2.5461 -8.9900 0.9855 19 6 -3.6880 -10.0075 1.2347 20 6 -4.4059 -10.0595 -0.1369 21 6 -4.3667 -8.6016 -0.6397 22 6 -0.4079 -3.5247 -1.5536 23 6 0.2182 -2.3648 -1.2008 24 1 -0.4850 0.8400 0.0004 25 1 2.6907 -3.6880 0.7478 26 1 1.5438 -5.7495 0.1069 27 1 -3.5414 -7.0844 0.6724 28 1 -1.7091 -9.4722 0.4805 29 1 -2.2201 -8.5437 1.9250 30 1 -4.3633 -9.6472 2.0107 31 1 -3.2867 -10.9862 1.4980 32 1 -5.4363 -10.3937 -0.0157 33 1 -3.8715 -10.7148 -0.8248 34 1 -5.2974 -8.0940 -0.3862 35 1 -4.2131 -8.5820 -1.7187 36 1 -1.2735 -3.4947 -2.1987 37 1 -0.1507 -1.4176 -1.5657 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000295326113.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:36 Heat of formation + Delta-G solvation = -119.259761 kcal Electronic energy + Delta-G solvation = -20632.344776 eV Core-core repulsion = 17339.147759 eV Total energy + Delta-G solvation = -3293.197016 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.54684 -38.99213 -37.37073 -36.29551 -35.17583 -33.61134 -29.83240 -29.41336 -28.93967 -28.21787 -25.44915 -22.92766 -21.28526 -20.96278 -20.61643 -20.08259 -18.59280 -17.53637 -17.24017 -16.21737 -15.87240 -15.62664 -15.34059 -14.53081 -14.11683 -13.86212 -13.55175 -13.08272 -12.83152 -12.45468 -12.26856 -12.15295 -11.98046 -11.40389 -11.37318 -11.28140 -11.24464 -11.10100 -11.00641 -10.84826 -10.72639 -10.47551 -10.38126 -10.20055 -10.01635 -9.44193 -9.24109 -7.75106 -7.49063 -6.97831 -4.55987 1.88973 2.74395 2.94869 2.97437 2.99351 3.04406 3.14730 3.77698 4.33851 4.36349 4.38438 4.67624 4.92501 5.21280 5.24394 5.28220 5.41889 5.44479 5.52622 5.67069 5.71681 5.83490 5.91860 6.01812 6.08421 6.09663 6.14820 6.46206 6.77703 6.84939 6.98143 7.09075 7.28741 7.39182 7.69158 7.82516 7.84933 8.03370 8.37651 8.63267 8.64439 8.91497 9.94638 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.044614 B = 0.003320 C = 0.003279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.460433 B = 8432.839439 C = 8538.063789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.776 5.776 2 C 0.072 3.928 3 Si 0.916 3.084 4 H -0.261 1.261 5 H -0.276 1.276 6 H -0.263 1.263 7 C -0.443 4.443 8 H 0.085 0.915 9 C 0.119 3.881 10 C -0.219 4.219 11 C -0.066 4.066 12 C -0.075 4.075 13 O -0.247 6.247 14 C 0.566 3.434 15 O -0.539 6.539 16 O -0.333 6.333 17 C 0.094 3.906 18 C -0.143 4.143 19 C -0.122 4.122 20 C -0.122 4.122 21 C -0.123 4.123 22 C -0.081 4.081 23 C -0.161 4.161 24 H 0.287 0.713 25 H 0.102 0.898 26 H 0.095 0.905 27 H 0.092 0.908 28 H 0.079 0.921 29 H 0.076 0.924 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.079 0.921 35 H 0.083 0.917 36 H 0.096 0.904 37 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.465 -11.677 -0.335 13.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.399 5.399 2 C -0.149 4.149 3 Si 0.739 3.261 4 H -0.185 1.185 5 H -0.201 1.201 6 H -0.187 1.187 7 C -0.471 4.471 8 H 0.103 0.897 9 C 0.116 3.884 10 C -0.239 4.239 11 C -0.084 4.084 12 C -0.117 4.117 13 O -0.162 6.162 14 C 0.377 3.623 15 O -0.437 6.437 16 O -0.252 6.252 17 C 0.040 3.960 18 C -0.181 4.181 19 C -0.160 4.160 20 C -0.160 4.160 21 C -0.161 4.161 22 C -0.100 4.100 23 C -0.180 4.180 24 H 0.098 0.902 25 H 0.120 0.880 26 H 0.113 0.887 27 H 0.110 0.890 28 H 0.098 0.902 29 H 0.095 0.905 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.098 0.902 35 H 0.102 0.898 36 H 0.114 0.886 37 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -6.704 -11.464 -0.199 13.282 hybrid contribution 0.204 0.827 0.330 0.913 sum -6.500 -10.637 0.131 12.467 Atomic orbital electron populations 1.69835 1.07786 1.30073 1.32236 1.26064 0.94845 1.01871 0.92090 0.86230 0.80110 0.79461 0.80252 1.18508 1.20089 1.18723 1.19716 0.98169 0.91048 1.38122 0.89714 1.17754 0.90675 0.92227 0.87755 1.20639 1.04514 0.92010 1.06725 1.20402 0.95251 0.97536 0.95240 1.17991 0.97361 0.82151 1.14169 1.84688 1.47234 1.39856 1.44404 1.22026 0.78836 0.78783 0.82646 1.91028 1.68530 1.60386 1.23761 1.86364 1.49035 1.42532 1.47281 1.23547 0.86870 0.96962 0.88647 1.22846 0.99007 0.96316 0.99929 1.22454 0.97048 0.99100 0.97377 1.22353 1.00805 0.95951 0.96870 1.22267 0.96154 0.95768 1.01895 1.20497 0.98689 0.91508 0.99293 1.20931 0.99859 0.96239 1.01008 0.90220 0.87977 0.88674 0.89013 0.90217 0.90494 0.91103 0.90968 0.91154 0.91093 0.90216 0.89793 0.88551 0.85606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.36 10.95 55.55 0.61 -18.75 16 2 C 0.07 1.72 5.14 -17.34 -0.09 1.63 16 3 Si 0.92 17.69 29.59 -169.99 -5.03 12.66 16 4 H -0.26 -4.98 7.11 56.52 0.40 -4.58 16 5 H -0.28 -5.20 7.11 56.52 0.40 -4.80 16 6 H -0.26 -5.02 7.11 56.52 0.40 -4.62 16 7 C -0.44 -11.26 9.04 -37.82 -0.34 -11.60 16 8 H 0.08 2.03 7.90 -52.49 -0.41 1.61 16 9 C 0.12 3.13 5.57 -106.81 -0.60 2.53 16 10 C -0.22 -5.42 9.74 -39.25 -0.38 -5.80 16 11 C -0.07 -1.58 9.88 -39.84 -0.39 -1.97 16 12 C -0.07 -1.84 4.96 -38.80 -0.19 -2.03 16 13 O -0.25 -5.66 10.05 -31.81 -0.32 -5.98 16 14 C 0.57 12.23 8.88 101.05 0.90 13.13 16 15 O -0.54 -12.97 15.36 -27.41 -0.42 -13.39 16 16 O -0.33 -5.94 9.84 -47.99 -0.47 -6.41 16 17 C 0.09 1.33 3.24 -25.62 -0.08 1.25 16 18 C -0.14 -1.74 6.57 -25.03 -0.16 -1.90 16 19 C -0.12 -1.09 6.91 -24.70 -0.17 -1.26 16 20 C -0.12 -1.03 6.83 -25.07 -0.17 -1.20 16 21 C -0.12 -1.29 6.62 -25.62 -0.17 -1.46 16 22 C -0.08 -2.00 9.92 -39.84 -0.40 -2.40 16 23 C -0.16 -4.18 8.64 -39.25 -0.34 -4.52 16 24 H 0.29 6.46 8.30 -40.82 -0.34 6.12 16 25 H 0.10 2.31 8.06 -52.49 -0.42 1.89 16 26 H 0.10 2.07 8.06 -52.48 -0.42 1.65 16 27 H 0.09 1.41 7.17 -51.93 -0.37 1.04 16 28 H 0.08 0.99 8.08 -51.93 -0.42 0.57 16 29 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.08 0.90 7.96 -51.93 -0.41 0.49 16 36 H 0.10 2.18 8.06 -52.49 -0.42 1.76 16 37 H 0.13 3.28 6.16 -52.49 -0.32 2.96 16 LS Contribution 317.66 15.07 4.79 4.79 Total: -1.00 -28.92 317.66 -8.32 -37.25 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: -4.88 Total: 5.44 kcal Atomic # 6 Polarization: -13.01 SS G_CDS: -2.59 Total: -15.60 kcal Atomic # 7 Polarization: -19.36 SS G_CDS: 0.61 Total: -18.75 kcal Atomic # 8 Polarization: -24.57 SS G_CDS: -1.21 Total: -25.78 kcal Atomic # 14 Polarization: 17.69 SS G_CDS: -5.03 Total: 12.66 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -28.92 -8.32 -37.25 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295326113.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.013 kcal (2) G-P(sol) polarization free energy of solvation -28.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds