Wall clock time and date at job start Mon Mar 30 2020 01:40:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30869 * 1 3 3 Si 1.86797 * 119.99920 * 2 1 4 4 H 1.48501 * 109.46821 * 239.99656 * 3 2 1 5 5 H 1.48500 * 109.47316 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47328 * 119.99998 * 3 2 1 7 7 C 1.39907 * 120.00055 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00202 * 197.40366 * 7 2 1 9 9 C 1.41225 * 119.99979 * 17.40171 * 7 2 1 10 10 C 1.40831 * 120.18208 * 204.83592 * 9 7 2 11 11 C 1.36444 * 119.80588 * 180.02562 * 10 9 7 12 12 C 1.39282 * 120.19273 * 359.97438 * 11 10 9 13 13 O 1.35735 * 119.81739 * 179.97438 * 12 11 10 14 14 C 1.34595 * 117.00268 * 84.71815 * 13 12 11 15 15 O 1.21439 * 119.99923 * 355.24549 * 14 13 12 16 16 O 1.34546 * 120.00258 * 175.23878 * 14 13 12 17 17 C 1.45199 * 117.00142 * 179.97438 * 16 14 13 18 18 C 1.54262 * 110.03693 * 267.91218 * 17 16 14 19 19 C 1.54962 * 104.16127 * 217.13320 * 18 17 16 20 20 C 1.54893 * 102.77523 * 37.88927 * 19 18 17 21 21 C 1.53870 * 110.03258 * 150.69152 * 17 16 14 22 22 C 1.39285 * 120.36645 * 0.25573 * 12 11 10 23 23 C 1.36454 * 120.18708 * 359.48422 * 22 12 11 24 24 H 0.96994 * 119.99892 * 359.97438 * 1 2 3 25 25 H 1.08002 * 120.09233 * 0.02562 * 10 9 7 26 26 H 1.08006 * 119.90611 * 179.97438 * 11 10 9 27 27 H 1.09006 * 110.01531 * 29.30769 * 17 16 14 28 28 H 1.08998 * 110.48656 * 335.78455 * 18 17 16 29 29 H 1.09003 * 110.48435 * 98.42473 * 18 17 16 30 30 H 1.08993 * 110.72520 * 279.57395 * 19 18 17 31 31 H 1.09003 * 110.92231 * 156.29614 * 19 18 17 32 32 H 1.09003 * 110.48345 * 203.40210 * 20 19 18 33 33 H 1.09006 * 110.59895 * 80.81336 * 20 19 18 34 34 H 1.09003 * 110.03877 * 238.57417 * 21 17 16 35 35 H 1.09001 * 110.03580 * 359.95446 * 21 17 16 36 36 H 1.08001 * 119.90350 * 179.71815 * 22 12 11 37 37 H 1.07999 * 120.09449 * 180.23322 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 3.0965 1.6963 -1.2125 5 1 1.2777 2.7465 -0.0006 6 1 3.0964 1.6965 1.2125 7 6 2.0082 -1.2116 0.0005 8 1 3.0512 -1.2329 0.2803 9 6 1.3506 -2.4068 -0.3647 10 6 1.8233 -3.6473 0.1056 11 6 1.1824 -4.7973 -0.2525 12 6 0.0633 -4.7470 -1.0802 13 8 -0.5681 -5.8958 -1.4321 14 6 -1.4848 -6.3773 -0.5722 15 8 -1.6529 -5.8364 0.5019 16 8 -2.2151 -7.4579 -0.9028 17 6 -3.1845 -7.9223 0.0734 18 6 -2.5461 -8.9900 0.9855 19 6 -3.6880 -10.0075 1.2347 20 6 -4.4059 -10.0595 -0.1369 21 6 -4.3667 -8.6016 -0.6397 22 6 -0.4079 -3.5247 -1.5536 23 6 0.2182 -2.3648 -1.2008 24 1 -0.4850 0.8400 0.0004 25 1 2.6907 -3.6880 0.7478 26 1 1.5438 -5.7495 0.1069 27 1 -3.5414 -7.0844 0.6724 28 1 -1.7091 -9.4722 0.4805 29 1 -2.2201 -8.5437 1.9250 30 1 -4.3633 -9.6472 2.0107 31 1 -3.2867 -10.9862 1.4980 32 1 -5.4363 -10.3937 -0.0157 33 1 -3.8715 -10.7148 -0.8248 34 1 -5.2974 -8.0940 -0.3862 35 1 -4.2131 -8.5820 -1.7187 36 1 -1.2735 -3.4947 -2.1987 37 1 -0.1507 -1.4176 -1.5657 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000295326113.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:40:36 Heat of formation + Delta-G solvation = -132.243419 kcal Electronic energy + Delta-G solvation = -20632.907789 eV Core-core repulsion = 17339.147759 eV Total energy + Delta-G solvation = -3293.760030 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.24492 -40.49606 -38.97352 -37.81500 -36.74755 -35.47362 -31.76146 -31.31067 -29.79544 -29.25356 -27.28921 -24.61596 -23.21521 -22.39690 -21.71348 -21.26918 -20.25252 -19.43339 -18.96127 -17.92155 -17.32775 -17.01149 -16.56229 -15.99510 -15.84398 -15.44121 -14.72453 -14.46809 -14.36987 -14.15846 -13.90184 -13.78629 -13.26686 -13.01634 -12.95257 -12.80053 -12.66049 -12.24630 -12.15570 -12.13237 -12.05101 -11.87935 -11.80832 -11.62832 -11.38834 -11.27771 -11.09390 -9.70229 -9.43898 -8.79796 -6.50113 0.16773 0.98123 1.07436 1.31793 1.39394 1.51852 1.55745 2.16039 2.56427 3.30671 3.45715 3.48257 3.58871 3.87856 4.15779 4.20157 4.24749 4.38051 4.40845 4.48811 4.58182 4.69027 4.82511 4.86794 4.97203 4.98734 5.05266 5.14642 5.15778 5.17450 5.24766 5.39588 5.47348 5.50755 5.80892 5.88641 5.95657 6.11934 6.45686 6.72547 6.74605 7.10027 8.15967 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.044614 B = 0.003320 C = 0.003279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.460433 B = 8432.839439 C = 8538.063789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.808 5.808 2 C 0.032 3.968 3 Si 0.993 3.007 4 H -0.256 1.256 5 H -0.267 1.267 6 H -0.256 1.256 7 C -0.470 4.470 8 H 0.093 0.907 9 C 0.091 3.909 10 C -0.230 4.230 11 C -0.071 4.071 12 C -0.085 4.085 13 O -0.250 6.250 14 C 0.572 3.428 15 O -0.567 6.567 16 O -0.326 6.326 17 C 0.079 3.921 18 C -0.146 4.146 19 C -0.114 4.114 20 C -0.116 4.116 21 C -0.120 4.120 22 C -0.088 4.088 23 C -0.179 4.179 24 H 0.296 0.704 25 H 0.118 0.882 26 H 0.115 0.885 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.063 0.937 30 H 0.080 0.920 31 H 0.090 0.910 32 H 0.095 0.905 33 H 0.075 0.925 34 H 0.095 0.905 35 H 0.082 0.918 36 H 0.110 0.890 37 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.948 -12.373 -0.153 14.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.431 5.431 2 C -0.186 4.186 3 Si 0.813 3.187 4 H -0.180 1.180 5 H -0.191 1.191 6 H -0.180 1.180 7 C -0.497 4.497 8 H 0.111 0.889 9 C 0.088 3.912 10 C -0.249 4.249 11 C -0.089 4.089 12 C -0.127 4.127 13 O -0.165 6.165 14 C 0.384 3.616 15 O -0.468 6.468 16 O -0.245 6.245 17 C 0.025 3.975 18 C -0.184 4.184 19 C -0.152 4.152 20 C -0.153 4.153 21 C -0.157 4.157 22 C -0.107 4.107 23 C -0.198 4.198 24 H 0.107 0.893 25 H 0.136 0.864 26 H 0.133 0.867 27 H 0.093 0.907 28 H 0.094 0.906 29 H 0.082 0.918 30 H 0.098 0.902 31 H 0.108 0.892 32 H 0.114 0.886 33 H 0.094 0.906 34 H 0.114 0.886 35 H 0.101 0.899 36 H 0.128 0.872 37 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -7.204 -12.200 -0.025 14.168 hybrid contribution 0.257 0.928 0.284 1.004 sum -6.947 -11.272 0.259 13.243 Atomic orbital electron populations 1.69880 1.09415 1.31656 1.32181 1.27008 0.95542 1.05224 0.90806 0.85072 0.78679 0.74530 0.80457 1.17975 1.19087 1.17977 1.20054 0.98760 0.91819 1.39028 0.88912 1.18129 0.91264 0.93407 0.88396 1.20859 1.05159 0.91821 1.07076 1.20638 0.94999 0.98318 0.94955 1.18090 0.97930 0.82483 1.14155 1.84589 1.47744 1.39374 1.44835 1.21919 0.78564 0.79295 0.81859 1.91008 1.69369 1.61536 1.24844 1.86407 1.48987 1.40630 1.48477 1.24107 0.87357 0.97104 0.88949 1.22880 1.00217 0.96567 0.98709 1.22466 0.95799 0.98799 0.98091 1.22374 1.02371 0.94252 0.96299 1.22356 0.94791 0.97129 1.01440 1.20676 0.99055 0.91492 0.99486 1.20921 1.00640 0.96283 1.01968 0.89288 0.86391 0.86688 0.90737 0.90637 0.91801 0.90181 0.89163 0.88619 0.90602 0.88608 0.89944 0.87161 0.86428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -40.68 10.95 21.82 0.24 -40.45 16 2 C 0.03 1.53 5.14 85.24 0.44 1.97 16 3 Si 0.99 35.60 29.59 68.60 2.03 37.63 16 4 H -0.26 -8.91 7.11 99.48 0.71 -8.21 16 5 H -0.27 -9.06 7.11 99.48 0.71 -8.36 16 6 H -0.26 -8.84 7.11 99.48 0.71 -8.13 16 7 C -0.47 -24.11 9.04 23.41 0.21 -23.89 16 8 H 0.09 4.45 7.90 -2.91 -0.02 4.42 16 9 C 0.09 4.89 5.57 -21.28 -0.12 4.77 16 10 C -0.23 -11.50 9.74 22.49 0.22 -11.28 16 11 C -0.07 -3.42 9.88 22.10 0.22 -3.20 16 12 C -0.08 -4.22 4.96 22.77 0.11 -4.10 16 13 O -0.25 -11.57 10.05 10.94 0.11 -11.46 16 14 C 0.57 24.95 8.88 113.37 1.01 25.96 16 15 O -0.57 -27.82 15.36 27.87 0.43 -27.39 16 16 O -0.33 -11.59 9.84 -46.97 -0.46 -12.06 16 17 C 0.08 2.17 3.24 31.32 0.10 2.27 16 18 C -0.15 -3.42 6.57 31.69 0.21 -3.21 16 19 C -0.11 -1.72 6.91 31.91 0.22 -1.50 16 20 C -0.12 -1.57 6.83 31.67 0.22 -1.36 16 21 C -0.12 -2.27 6.62 31.32 0.21 -2.06 16 22 C -0.09 -4.47 9.92 22.10 0.22 -4.25 16 23 C -0.18 -9.55 8.64 22.48 0.19 -9.36 16 24 H 0.30 13.34 8.30 -92.71 -0.77 12.57 16 25 H 0.12 5.35 8.06 -2.91 -0.02 5.33 16 26 H 0.12 4.99 8.06 -2.91 -0.02 4.97 16 27 H 0.07 2.32 7.17 -2.38 -0.02 2.30 16 28 H 0.07 1.82 8.08 -2.39 -0.02 1.80 16 29 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.08 0.99 8.14 -2.38 -0.02 0.97 16 34 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.08 1.61 7.96 -2.39 -0.02 1.59 16 36 H 0.11 5.09 8.06 -2.91 -0.02 5.07 16 37 H 0.12 6.36 6.16 -2.91 -0.02 6.34 16 Total: -1.00 -63.04 317.66 6.87 -56.17 By element: Atomic # 1 Polarization: 25.73 SS G_CDS: 1.07 Total: 26.79 kcal Atomic # 6 Polarization: -32.71 SS G_CDS: 3.46 Total: -29.25 kcal Atomic # 7 Polarization: -40.68 SS G_CDS: 0.24 Total: -40.45 kcal Atomic # 8 Polarization: -50.98 SS G_CDS: 0.08 Total: -50.90 kcal Atomic # 14 Polarization: 35.60 SS G_CDS: 2.03 Total: 37.63 kcal Total: -63.04 6.87 -56.17 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295326113.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.071 kcal (2) G-P(sol) polarization free energy of solvation -63.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds