Wall clock time and date at job start Mon Mar 30 2020 01:43:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86809 * 119.99898 * 2 1 4 4 H 1.48504 * 109.46792 * 270.00078 * 3 2 1 5 5 H 1.48499 * 109.47051 * 29.99711 * 3 2 1 6 6 H 1.48498 * 109.47269 * 149.99979 * 3 2 1 7 7 C 1.39928 * 120.00297 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00647 * 193.35931 * 7 2 1 9 9 C 1.41404 * 119.99920 * 13.36059 * 7 2 1 10 10 C 1.40765 * 120.21676 * 27.43860 * 9 7 2 11 11 C 1.37626 * 119.84945 * 180.02562 * 10 9 7 12 12 C 1.38560 * 120.30958 * 0.02562 * 11 10 9 13 13 C 1.39104 * 120.44449 * 359.97438 * 12 11 10 14 14 O 1.35943 * 119.92966 * 180.27395 * 13 12 11 15 15 C 1.34576 * 117.00091 * 257.37286 * 14 13 12 16 16 O 1.21434 * 119.99979 * 356.10700 * 15 14 13 17 17 O 1.34549 * 120.00270 * 176.10708 * 15 14 13 18 18 C 1.45196 * 116.99918 * 179.97438 * 17 15 14 19 19 C 1.54273 * 110.03091 * 267.90674 * 18 17 15 20 20 C 1.54961 * 104.15806 * 217.14153 * 19 18 17 21 21 C 1.54888 * 102.78054 * 37.88619 * 20 19 18 22 22 C 1.53875 * 110.02835 * 150.69562 * 18 17 15 23 23 C 1.38123 * 120.13537 * 0.02562 * 13 12 11 24 24 H 0.97004 * 120.00112 * 0.02562 * 1 2 3 25 25 H 1.07990 * 120.07525 * 0.04819 * 10 9 7 26 26 H 1.08008 * 119.84332 * 179.97438 * 11 10 9 27 27 H 1.08004 * 119.77658 * 180.02562 * 12 11 10 28 28 H 1.08990 * 110.01865 * 29.29886 * 18 17 15 29 29 H 1.09003 * 110.48546 * 335.78760 * 19 18 17 30 30 H 1.08999 * 110.48342 * 98.42670 * 19 18 17 31 31 H 1.09003 * 110.71985 * 279.57136 * 20 19 18 32 32 H 1.09006 * 110.92253 * 156.29780 * 20 19 18 33 33 H 1.08996 * 110.48682 * 203.40159 * 21 20 19 34 34 H 1.09006 * 110.59363 * 80.81910 * 21 20 19 35 35 H 1.09005 * 110.02879 * 238.56769 * 22 18 17 36 36 H 1.08996 * 110.03451 * 359.94542 * 22 18 17 37 37 H 1.08004 * 120.14904 * 179.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.4897 2.0465 -1.4001 5 1 1.4397 2.6527 0.7000 6 1 3.5398 1.4403 0.7000 7 6 2.0080 -1.2118 0.0005 8 1 3.0660 -1.2244 0.2166 9 6 1.3297 -2.4200 -0.2819 10 6 0.1797 -2.4137 -1.0937 11 6 -0.4748 -3.5940 -1.3633 12 6 -0.0075 -4.7883 -0.8389 13 6 1.1276 -4.8090 -0.0352 14 8 1.5802 -5.9875 0.4693 15 6 1.3113 -6.2417 1.7632 16 8 0.7524 -5.4049 2.4429 17 8 1.6618 -7.4229 2.3037 18 6 1.3409 -7.6277 3.7049 19 6 2.5307 -7.1977 4.5878 20 6 2.5423 -8.2344 5.7395 21 6 2.1633 -9.5518 5.0184 22 6 1.1072 -9.1238 3.9788 23 6 1.7988 -3.6353 0.2472 24 1 -0.4850 0.8401 -0.0004 25 1 -0.1878 -1.4850 -1.5044 26 1 -1.3574 -3.5890 -1.9859 27 1 -0.5276 -5.7096 -1.0564 28 1 0.4522 -7.0559 3.9716 29 1 3.4617 -7.2450 4.0228 30 1 2.3717 -6.1930 4.9793 31 1 1.7989 -7.9799 6.4949 32 1 3.5340 -8.3096 6.1856 33 1 1.7368 -10.2641 5.7246 34 1 3.0339 -9.9819 4.5231 35 1 0.1051 -9.2779 4.3793 36 1 1.2336 -9.6959 3.0597 37 1 2.6799 -3.6511 0.8716 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000296410043.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:44 Heat of formation + Delta-G solvation = -117.433344 kcal Electronic energy + Delta-G solvation = -20755.021375 eV Core-core repulsion = 17461.903558 eV Total energy + Delta-G solvation = -3293.117817 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.75436 -39.12855 -37.35954 -36.33795 -35.33214 -33.53164 -30.01952 -29.04130 -28.93812 -28.07764 -25.43662 -23.47459 -21.03345 -21.00161 -20.72791 -20.16155 -18.81337 -17.84458 -16.56743 -16.35890 -15.69979 -15.65502 -15.26290 -14.74492 -14.39325 -13.89458 -13.57489 -13.26037 -12.93232 -12.50145 -12.41174 -12.12016 -11.74911 -11.49352 -11.40014 -11.29881 -11.18693 -10.95170 -10.87931 -10.82456 -10.71367 -10.49254 -10.43556 -10.30448 -10.07258 -9.44336 -9.26644 -7.64797 -7.46596 -6.81423 -4.48346 1.75555 2.68508 2.82095 2.97942 3.04887 3.08499 3.14464 3.88887 4.30633 4.33904 4.46357 4.61505 4.80197 5.16088 5.20855 5.24991 5.38809 5.40256 5.53672 5.65171 5.67888 5.80766 5.83145 6.00136 6.08030 6.15016 6.24968 6.36418 6.75629 6.86375 6.97735 7.01616 7.13824 7.46978 7.62357 7.81208 7.89030 8.06247 8.43600 8.60779 8.77537 8.82434 10.13513 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.025545 B = 0.003950 C = 0.003572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.822438 B = 7086.555858 C = 7837.302051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.795 5.795 2 C 0.074 3.926 3 Si 0.915 3.085 4 H -0.267 1.267 5 H -0.277 1.277 6 H -0.262 1.262 7 C -0.459 4.459 8 H 0.080 0.920 9 C 0.117 3.883 10 C -0.149 4.149 11 C -0.096 4.096 12 C -0.229 4.229 13 C 0.098 3.902 14 O -0.266 6.266 15 C 0.586 3.414 16 O -0.527 6.527 17 O -0.330 6.330 18 C 0.096 3.904 19 C -0.145 4.145 20 C -0.122 4.122 21 C -0.122 4.122 22 C -0.123 4.123 23 C -0.205 4.205 24 H 0.282 0.718 25 H 0.126 0.874 26 H 0.101 0.899 27 H 0.098 0.902 28 H 0.094 0.906 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.080 0.920 36 H 0.084 0.916 37 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.253 -12.094 7.001 14.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C -0.144 4.144 3 Si 0.739 3.261 4 H -0.192 1.192 5 H -0.202 1.202 6 H -0.186 1.186 7 C -0.488 4.488 8 H 0.098 0.902 9 C 0.114 3.886 10 C -0.169 4.169 11 C -0.114 4.114 12 C -0.249 4.249 13 C 0.058 3.942 14 O -0.182 6.182 15 C 0.396 3.604 16 O -0.425 6.425 17 O -0.249 6.249 18 C 0.041 3.959 19 C -0.182 4.182 20 C -0.160 4.160 21 C -0.160 4.160 22 C -0.161 4.161 23 C -0.225 4.225 24 H 0.093 0.907 25 H 0.144 0.856 26 H 0.119 0.881 27 H 0.116 0.884 28 H 0.112 0.888 29 H 0.099 0.901 30 H 0.097 0.903 31 H 0.089 0.911 32 H 0.091 0.909 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.099 0.901 36 H 0.103 0.897 37 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 1.995 -11.838 7.107 13.951 hybrid contribution 0.209 0.880 0.163 0.919 sum 2.204 -10.957 7.269 13.333 Atomic orbital electron populations 1.69793 1.07539 1.29402 1.35265 1.25917 0.94848 1.01413 0.92195 0.86206 0.80370 0.80202 0.79337 1.19178 1.20203 1.18567 1.19576 0.96754 0.90451 1.42037 0.90150 1.17447 0.91415 0.91288 0.88416 1.21501 0.98519 0.96937 0.99927 1.20552 0.98695 0.92296 0.99897 1.20335 0.98046 0.97727 1.08791 1.18226 0.96621 0.81210 0.98174 1.84333 1.71644 1.40347 1.21886 1.20954 0.75735 0.80995 0.82747 1.91093 1.43181 1.46435 1.61743 1.86341 1.76326 1.33307 1.28882 1.23618 0.99429 0.97406 0.75411 1.22867 0.98624 1.00104 0.96645 1.22455 1.02011 0.94425 0.97075 1.22354 0.98753 0.97465 0.97424 1.22273 1.00014 0.93311 1.00462 1.21168 1.03346 0.91830 1.06115 0.90676 0.85624 0.88113 0.88367 0.88803 0.90092 0.90280 0.91051 0.90882 0.91098 0.91054 0.90103 0.89747 0.88153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.47 10.89 55.55 0.61 -19.86 16 2 C 0.07 1.85 5.21 -17.35 -0.09 1.76 16 3 Si 0.91 18.58 29.58 -169.99 -5.03 13.55 16 4 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 5 H -0.28 -5.51 7.11 56.52 0.40 -5.11 16 6 H -0.26 -5.28 7.11 56.52 0.40 -4.87 16 7 C -0.46 -12.22 9.06 -37.74 -0.34 -12.56 16 8 H 0.08 2.05 7.88 -52.49 -0.41 1.64 16 9 C 0.12 3.17 5.55 -106.84 -0.59 2.58 16 10 C -0.15 -3.87 8.67 -38.85 -0.34 -4.21 16 11 C -0.10 -2.25 10.02 -39.69 -0.40 -2.65 16 12 C -0.23 -5.39 9.99 -39.14 -0.39 -5.79 16 13 C 0.10 2.41 5.11 -39.30 -0.20 2.21 16 14 O -0.27 -6.04 10.07 -32.41 -0.33 -6.36 16 15 C 0.59 12.43 8.82 101.05 0.89 13.32 16 16 O -0.53 -12.53 15.16 -27.41 -0.42 -12.94 16 17 O -0.33 -5.70 9.84 -48.00 -0.47 -6.17 16 18 C 0.10 1.30 3.24 -25.61 -0.08 1.22 16 19 C -0.14 -1.74 6.57 -25.03 -0.16 -1.91 16 20 C -0.12 -1.07 6.91 -24.70 -0.17 -1.24 16 21 C -0.12 -0.99 6.83 -25.08 -0.17 -1.17 16 22 C -0.12 -1.23 6.62 -25.62 -0.17 -1.40 16 23 C -0.20 -5.34 9.35 -38.73 -0.36 -5.70 16 24 H 0.28 6.58 8.30 -40.82 -0.34 6.24 16 25 H 0.13 3.28 6.21 -52.49 -0.33 2.96 16 26 H 0.10 2.04 8.06 -52.48 -0.42 1.62 16 27 H 0.10 2.07 8.06 -52.48 -0.42 1.65 16 28 H 0.09 1.38 7.17 -51.93 -0.37 1.00 16 29 H 0.08 1.00 8.08 -51.93 -0.42 0.59 16 30 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.08 0.85 7.96 -51.93 -0.41 0.44 16 37 H 0.10 2.54 8.06 -52.48 -0.42 2.12 16 LS Contribution 317.43 15.07 4.78 4.78 Total: -1.00 -29.53 317.43 -8.32 -37.85 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: -4.88 Total: 4.69 kcal Atomic # 6 Polarization: -12.95 SS G_CDS: -2.58 Total: -15.53 kcal Atomic # 7 Polarization: -20.47 SS G_CDS: 0.61 Total: -19.86 kcal Atomic # 8 Polarization: -24.27 SS G_CDS: -1.21 Total: -25.48 kcal Atomic # 14 Polarization: 18.58 SS G_CDS: -5.03 Total: 13.55 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -29.53 -8.32 -37.85 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000296410043.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.588 kcal (2) G-P(sol) polarization free energy of solvation -29.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds