Wall clock time and date at job start Mon Mar 30 2020 01:43:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86809 * 119.99898 * 2 1 4 4 H 1.48504 * 109.46792 * 270.00078 * 3 2 1 5 5 H 1.48499 * 109.47051 * 29.99711 * 3 2 1 6 6 H 1.48498 * 109.47269 * 149.99979 * 3 2 1 7 7 C 1.39928 * 120.00297 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00647 * 193.35931 * 7 2 1 9 9 C 1.41404 * 119.99920 * 13.36059 * 7 2 1 10 10 C 1.40765 * 120.21676 * 27.43860 * 9 7 2 11 11 C 1.37626 * 119.84945 * 180.02562 * 10 9 7 12 12 C 1.38560 * 120.30958 * 0.02562 * 11 10 9 13 13 C 1.39104 * 120.44449 * 359.97438 * 12 11 10 14 14 O 1.35943 * 119.92966 * 180.27395 * 13 12 11 15 15 C 1.34576 * 117.00091 * 257.37286 * 14 13 12 16 16 O 1.21434 * 119.99979 * 356.10700 * 15 14 13 17 17 O 1.34549 * 120.00270 * 176.10708 * 15 14 13 18 18 C 1.45196 * 116.99918 * 179.97438 * 17 15 14 19 19 C 1.54273 * 110.03091 * 267.90674 * 18 17 15 20 20 C 1.54961 * 104.15806 * 217.14153 * 19 18 17 21 21 C 1.54888 * 102.78054 * 37.88619 * 20 19 18 22 22 C 1.53875 * 110.02835 * 150.69562 * 18 17 15 23 23 C 1.38123 * 120.13537 * 0.02562 * 13 12 11 24 24 H 0.97004 * 120.00112 * 0.02562 * 1 2 3 25 25 H 1.07990 * 120.07525 * 0.04819 * 10 9 7 26 26 H 1.08008 * 119.84332 * 179.97438 * 11 10 9 27 27 H 1.08004 * 119.77658 * 180.02562 * 12 11 10 28 28 H 1.08990 * 110.01865 * 29.29886 * 18 17 15 29 29 H 1.09003 * 110.48546 * 335.78760 * 19 18 17 30 30 H 1.08999 * 110.48342 * 98.42670 * 19 18 17 31 31 H 1.09003 * 110.71985 * 279.57136 * 20 19 18 32 32 H 1.09006 * 110.92253 * 156.29780 * 20 19 18 33 33 H 1.08996 * 110.48682 * 203.40159 * 21 20 19 34 34 H 1.09006 * 110.59363 * 80.81910 * 21 20 19 35 35 H 1.09005 * 110.02879 * 238.56769 * 22 18 17 36 36 H 1.08996 * 110.03451 * 359.94542 * 22 18 17 37 37 H 1.08004 * 120.14904 * 179.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 2.4897 2.0465 -1.4001 5 1 1.4397 2.6527 0.7000 6 1 3.5398 1.4403 0.7000 7 6 2.0080 -1.2118 0.0005 8 1 3.0660 -1.2244 0.2166 9 6 1.3297 -2.4200 -0.2819 10 6 0.1797 -2.4137 -1.0937 11 6 -0.4748 -3.5940 -1.3633 12 6 -0.0075 -4.7883 -0.8389 13 6 1.1276 -4.8090 -0.0352 14 8 1.5802 -5.9875 0.4693 15 6 1.3113 -6.2417 1.7632 16 8 0.7524 -5.4049 2.4429 17 8 1.6618 -7.4229 2.3037 18 6 1.3409 -7.6277 3.7049 19 6 2.5307 -7.1977 4.5878 20 6 2.5423 -8.2344 5.7395 21 6 2.1633 -9.5518 5.0184 22 6 1.1072 -9.1238 3.9788 23 6 1.7988 -3.6353 0.2472 24 1 -0.4850 0.8401 -0.0004 25 1 -0.1878 -1.4850 -1.5044 26 1 -1.3574 -3.5890 -1.9859 27 1 -0.5276 -5.7096 -1.0564 28 1 0.4522 -7.0559 3.9716 29 1 3.4617 -7.2450 4.0228 30 1 2.3717 -6.1930 4.9793 31 1 1.7989 -7.9799 6.4949 32 1 3.5340 -8.3096 6.1856 33 1 1.7368 -10.2641 5.7246 34 1 3.0339 -9.9819 4.5231 35 1 0.1051 -9.2779 4.3793 36 1 1.2336 -9.6959 3.0597 37 1 2.6799 -3.6511 0.8716 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000296410043.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:44 Heat of formation + Delta-G solvation = -131.205205 kcal Electronic energy + Delta-G solvation = -20755.618568 eV Core-core repulsion = 17461.903558 eV Total energy + Delta-G solvation = -3293.715010 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 276.119 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.44730 -40.60450 -38.94158 -37.89650 -36.85588 -35.44802 -31.97216 -30.82445 -29.80128 -29.15954 -27.39916 -25.14601 -22.95480 -22.52190 -21.73901 -21.30650 -20.48566 -19.63882 -18.24538 -18.03999 -17.41243 -16.80227 -16.62726 -16.54328 -15.91951 -15.44404 -14.87849 -14.59067 -14.37779 -14.26183 -13.80892 -13.64458 -13.31059 -13.05494 -12.87696 -12.76242 -12.57822 -12.28485 -12.20143 -12.14493 -12.06067 -11.96145 -11.89279 -11.65164 -11.41039 -11.33232 -11.13278 -9.60780 -9.43025 -8.70485 -6.49924 0.05417 0.80574 1.05724 1.21842 1.38071 1.49239 1.52067 2.18750 2.61201 3.11844 3.43847 3.46084 3.55572 3.86312 4.08665 4.26342 4.36694 4.39995 4.40827 4.46938 4.52156 4.68149 4.81994 4.82469 4.89916 4.97877 5.05710 5.07988 5.14576 5.16317 5.20980 5.33509 5.39469 5.60833 5.72934 5.86780 5.92570 6.13121 6.48372 6.73265 6.80408 6.94049 8.27267 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.025545 B = 0.003950 C = 0.003572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.822438 B = 7086.555858 C = 7837.302051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.035 3.965 3 Si 0.991 3.009 4 H -0.256 1.256 5 H -0.266 1.266 6 H -0.261 1.261 7 C -0.495 4.495 8 H 0.077 0.923 9 C 0.092 3.908 10 C -0.170 4.170 11 C -0.089 4.089 12 C -0.230 4.230 13 C 0.095 3.905 14 O -0.269 6.269 15 C 0.591 3.409 16 O -0.557 6.557 17 O -0.321 6.321 18 C 0.080 3.920 19 C -0.149 4.149 20 C -0.114 4.114 21 C -0.116 4.116 22 C -0.118 4.118 23 C -0.231 4.231 24 H 0.292 0.708 25 H 0.119 0.881 26 H 0.137 0.863 27 H 0.127 0.873 28 H 0.079 0.921 29 H 0.074 0.926 30 H 0.062 0.938 31 H 0.081 0.919 32 H 0.088 0.912 33 H 0.097 0.903 34 H 0.075 0.925 35 H 0.099 0.901 36 H 0.084 0.916 37 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.084 -13.083 7.614 15.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C -0.180 4.180 3 Si 0.811 3.189 4 H -0.180 1.180 5 H -0.190 1.190 6 H -0.185 1.185 7 C -0.524 4.524 8 H 0.095 0.905 9 C 0.089 3.911 10 C -0.189 4.189 11 C -0.107 4.107 12 C -0.250 4.250 13 C 0.054 3.946 14 O -0.185 6.185 15 C 0.402 3.598 16 O -0.457 6.457 17 O -0.239 6.239 18 C 0.026 3.974 19 C -0.187 4.187 20 C -0.152 4.152 21 C -0.153 4.153 22 C -0.155 4.155 23 C -0.251 4.251 24 H 0.103 0.897 25 H 0.137 0.863 26 H 0.155 0.845 27 H 0.145 0.855 28 H 0.098 0.902 29 H 0.092 0.908 30 H 0.081 0.919 31 H 0.099 0.901 32 H 0.107 0.893 33 H 0.115 0.885 34 H 0.094 0.906 35 H 0.118 0.882 36 H 0.103 0.897 37 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 1.825 -12.871 7.724 15.121 hybrid contribution 0.228 1.054 0.029 1.079 sum 2.053 -11.816 7.753 14.281 Atomic orbital electron populations 1.69828 1.08936 1.30997 1.35074 1.26805 0.95675 1.04585 0.90968 0.85077 0.78763 0.75279 0.79827 1.18033 1.19018 1.18507 1.19845 0.96971 0.91666 1.43948 0.90468 1.17793 0.92328 0.91890 0.89071 1.21545 0.98946 0.97706 1.00744 1.20918 0.99208 0.91331 0.99281 1.20702 0.97503 0.98995 1.07792 1.18360 0.96660 0.81291 0.98240 1.84265 1.71880 1.39450 1.22895 1.20974 0.75179 0.81709 0.81980 1.91072 1.44713 1.47723 1.62174 1.86404 1.75650 1.30849 1.31029 1.24189 0.99577 1.00141 0.73457 1.22912 0.97519 1.00572 0.97716 1.22466 1.03386 0.93398 0.95905 1.22377 0.98362 0.97419 0.97167 1.22363 1.01886 0.90030 1.01254 1.21212 1.03973 0.92653 1.07217 0.89672 0.86336 0.84488 0.85459 0.90246 0.90765 0.91920 0.90069 0.89309 0.88482 0.90650 0.88231 0.89700 0.88997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -42.83 10.89 21.82 0.24 -42.59 16 2 C 0.03 1.77 5.21 85.25 0.44 2.21 16 3 Si 0.99 38.06 29.58 68.60 2.03 40.09 16 4 H -0.26 -9.35 7.11 99.48 0.71 -8.64 16 5 H -0.27 -9.66 7.11 99.48 0.71 -8.95 16 6 H -0.26 -9.91 7.11 99.48 0.71 -9.21 16 7 C -0.50 -27.31 9.06 23.46 0.21 -27.10 16 8 H 0.08 4.12 7.88 -2.91 -0.02 4.10 16 9 C 0.09 5.15 5.55 -21.30 -0.12 5.03 16 10 C -0.17 -8.96 8.67 22.74 0.20 -8.76 16 11 C -0.09 -4.12 10.02 22.20 0.22 -3.90 16 12 C -0.23 -10.66 9.99 22.55 0.23 -10.44 16 13 C 0.09 4.74 5.11 22.45 0.11 4.85 16 14 O -0.27 -12.33 10.07 8.80 0.09 -12.25 16 15 C 0.59 25.49 8.82 113.37 1.00 26.49 16 16 O -0.56 -27.25 15.16 27.88 0.42 -26.83 16 17 O -0.32 -11.10 9.84 -47.00 -0.46 -11.56 16 18 C 0.08 2.14 3.24 31.32 0.10 2.24 16 19 C -0.15 -3.56 6.57 31.70 0.21 -3.35 16 20 C -0.11 -1.74 6.91 31.91 0.22 -1.51 16 21 C -0.12 -1.52 6.83 31.67 0.22 -1.30 16 22 C -0.12 -2.09 6.62 31.32 0.21 -1.89 16 23 C -0.23 -12.53 9.35 22.82 0.21 -12.32 16 24 H 0.29 13.60 8.30 -92.71 -0.77 12.83 16 25 H 0.12 6.33 6.21 -2.92 -0.02 6.31 16 26 H 0.14 5.24 8.06 -2.91 -0.02 5.21 16 27 H 0.13 5.08 8.06 -2.91 -0.02 5.06 16 28 H 0.08 2.37 7.17 -2.39 -0.02 2.35 16 29 H 0.07 1.85 8.08 -2.39 -0.02 1.83 16 30 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.09 1.11 8.14 -2.38 -0.02 1.09 16 33 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 35 H 0.10 1.42 8.14 -2.38 -0.02 1.40 16 36 H 0.08 1.53 7.96 -2.39 -0.02 1.51 16 37 H 0.09 4.96 8.06 -2.91 -0.02 4.93 16 Total: -1.00 -65.41 317.43 6.85 -58.56 By element: Atomic # 1 Polarization: 23.24 SS G_CDS: 1.07 Total: 24.30 kcal Atomic # 6 Polarization: -33.20 SS G_CDS: 3.47 Total: -29.73 kcal Atomic # 7 Polarization: -42.83 SS G_CDS: 0.24 Total: -42.59 kcal Atomic # 8 Polarization: -50.68 SS G_CDS: 0.05 Total: -50.64 kcal Atomic # 14 Polarization: 38.06 SS G_CDS: 2.03 Total: 40.09 kcal Total: -65.41 6.85 -58.56 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000296410043.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.644 kcal (2) G-P(sol) polarization free energy of solvation -65.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds