Wall clock time and date at job start Mon Mar 30 2020 01:34:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.36939 * 120.00270 * 2 1 4 4 H 1.07995 * 119.99808 * 202.35973 * 3 2 1 5 5 C 1.38813 * 119.99445 * 22.36201 * 3 2 1 6 6 N 1.31613 * 120.00465 * 11.34879 * 5 3 2 7 7 Si 1.86809 * 119.99551 * 191.35336 * 5 3 2 8 8 H 1.48503 * 109.47012 * 0.02562 * 7 5 3 9 9 H 1.48501 * 109.47061 * 119.99882 * 7 5 3 10 10 H 1.48504 * 109.46818 * 239.99810 * 7 5 3 11 11 C 1.46500 * 119.99926 * 180.02562 * 2 1 3 12 12 C 1.50707 * 109.46979 * 269.99984 * 11 2 1 13 13 C 1.35221 * 126.66120 * 90.31345 * 12 11 2 14 14 C 1.42297 * 103.93570 * 180.16093 * 13 12 11 15 15 C 1.48402 * 126.93441 * 179.85376 * 14 13 12 16 16 C 1.39352 * 120.08945 * 179.71268 * 15 14 13 17 17 C 1.37967 * 119.90157 * 180.02562 * 16 15 14 18 18 C 1.38556 * 120.09517 * 0.02562 * 17 16 15 19 19 F 1.35106 * 119.90587 * 179.97438 * 18 17 16 20 20 C 1.38563 * 120.19034 * 0.24993 * 18 17 16 21 21 C 1.37961 * 120.09009 * 359.44950 * 20 18 17 22 22 N 1.31001 * 106.12023 * 359.59561 * 14 13 12 23 23 O 1.20900 * 111.42536 * 0.25719 * 22 14 13 24 24 H 1.08996 * 109.47371 * 274.19661 * 1 2 3 25 25 H 1.09001 * 109.47167 * 34.20034 * 1 2 3 26 26 H 1.09000 * 109.47118 * 154.19456 * 1 2 3 27 27 H 0.96996 * 120.00604 * 179.97438 * 6 5 3 28 28 H 1.09001 * 109.47535 * 150.00182 * 11 2 1 29 29 H 1.08997 * 109.47510 * 29.99957 * 11 2 1 30 30 H 1.08001 * 128.03120 * 0.05200 * 13 12 11 31 31 H 1.07994 * 120.04639 * 0.04475 * 16 15 14 32 32 H 1.08007 * 119.94868 * 180.02562 * 17 16 15 33 33 H 1.07998 * 119.95372 * 179.70411 * 20 18 17 34 34 H 1.07999 * 120.04685 * 180.27670 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1687 1.2210 -0.3558 5 6 1.5339 2.3428 0.4574 6 7 0.3844 2.2689 1.0942 7 14 2.3366 4.0048 0.1689 8 1 3.6135 3.8168 -0.5656 9 1 1.4265 4.8616 -0.6328 10 1 2.6076 4.6570 1.4752 11 6 2.1974 -1.2687 -0.0006 12 6 2.4486 -1.7044 1.4201 13 6 1.6465 -2.4850 2.1790 14 6 2.3381 -2.5839 3.4187 15 6 1.9020 -3.3285 4.6261 16 6 2.6990 -3.3341 5.7692 17 6 2.2901 -4.0281 6.8893 18 6 1.0893 -4.7192 6.8786 19 9 0.6929 -5.3979 7.9774 20 6 0.2965 -4.7210 5.7421 21 6 0.6949 -4.0246 4.6198 22 7 3.4399 -1.8897 3.2770 23 8 3.5132 -1.3976 2.1751 24 1 -0.3634 0.0752 1.0249 25 1 -0.3633 0.8500 -0.5776 26 1 -0.3633 -0.9252 -0.4474 27 1 -0.0457 3.0772 1.4142 28 1 3.1499 -1.1383 -0.5143 29 1 1.6084 -2.0282 -0.5147 30 1 0.6999 -2.9287 1.9079 31 1 3.6352 -2.7958 5.7783 32 1 2.9071 -4.0326 7.7759 33 1 -0.6365 -5.2649 5.7364 34 1 0.0743 -4.0227 3.7359 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340634531.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:35 Heat of formation + Delta-G solvation = 63.564150 kcal Electronic energy + Delta-G solvation = -20243.693174 eV Core-core repulsion = 16867.256443 eV Total energy + Delta-G solvation = -3376.436731 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 276.101 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.02032 -44.18454 -39.02012 -35.93803 -33.85849 -32.36750 -31.34333 -30.45918 -29.75005 -26.52951 -25.84324 -23.78438 -23.33399 -21.89401 -21.57576 -19.78810 -17.78628 -17.05652 -16.84941 -16.68729 -16.13246 -15.75329 -15.70637 -14.88230 -14.23224 -13.78388 -13.75932 -13.65282 -13.50858 -13.27548 -12.69833 -12.67475 -12.13192 -11.94510 -11.33644 -11.20595 -10.99797 -10.93230 -10.67678 -10.42796 -10.29595 -10.10460 -10.03742 -9.26697 -8.80365 -8.71053 -8.29825 -7.03571 -5.89700 -3.36911 0.74345 1.11460 2.20198 2.75820 3.31809 3.39508 3.41686 3.71502 3.79570 4.10872 4.28501 4.39486 4.56151 4.72366 4.94698 5.13629 5.29902 5.39852 5.44711 5.60429 5.68085 5.78262 5.83976 5.97276 5.99097 6.14223 6.24512 6.33606 6.49201 6.57878 6.60910 6.73150 7.22639 7.58160 7.69810 8.20090 8.83671 9.04707 9.64115 10.10563 11.14607 Molecular weight = 276.10amu Principal moments of inertia in cm(-1) A = 0.026963 B = 0.003870 C = 0.003829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.223789 B = 7233.419960 C = 7311.077700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.158 3.842 2 N -0.580 5.580 3 C -0.266 4.266 4 H 0.077 0.923 5 C 0.009 3.991 6 N -0.901 5.901 7 Si 0.910 3.090 8 H -0.274 1.274 9 H -0.287 1.287 10 H -0.288 1.288 11 C 0.211 3.789 12 C -0.003 4.003 13 C -0.247 4.247 14 C 0.041 3.959 15 C -0.010 4.010 16 C -0.069 4.069 17 C -0.153 4.153 18 C 0.095 3.905 19 F -0.142 7.142 20 C -0.152 4.152 21 C -0.069 4.069 22 N -0.372 5.372 23 O 0.105 5.895 24 H 0.031 0.969 25 H 0.052 0.948 26 H 0.003 0.997 27 H 0.255 0.745 28 H 0.071 0.929 29 H 0.080 0.920 30 H 0.161 0.839 31 H 0.138 0.862 32 H 0.137 0.863 33 H 0.139 0.861 34 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.281 -13.449 5.294 14.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.300 5.300 3 C -0.395 4.395 4 H 0.095 0.905 5 C -0.191 4.191 6 N -0.544 5.544 7 Si 0.739 3.261 8 H -0.199 1.199 9 H -0.214 1.214 10 H -0.215 1.215 11 C 0.081 3.919 12 C -0.071 4.071 13 C -0.271 4.271 14 C -0.115 4.115 15 C -0.011 4.011 16 C -0.089 4.089 17 C -0.172 4.172 18 C 0.076 3.924 19 F -0.120 7.120 20 C -0.171 4.171 21 C -0.088 4.088 22 N -0.076 5.076 23 O 0.039 5.961 24 H 0.050 0.950 25 H 0.071 0.929 26 H 0.021 0.979 27 H 0.066 0.934 28 H 0.090 0.910 29 H 0.098 0.902 30 H 0.179 0.821 31 H 0.156 0.844 32 H 0.155 0.845 33 H 0.157 0.843 34 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 1.193 -12.995 6.148 14.425 hybrid contribution -0.618 0.661 0.182 0.923 sum 0.575 -12.334 6.329 13.875 Atomic orbital electron populations 1.20932 0.81669 0.96254 0.99763 1.44331 1.02372 1.00199 1.83103 1.19387 0.98722 0.84681 1.36754 0.90479 1.25140 0.97458 0.99046 0.97443 1.70075 1.17629 1.27552 1.39143 0.86103 0.78846 0.83536 0.77606 1.19914 1.21374 1.21517 1.19895 0.97907 0.89440 0.84692 1.26934 0.86560 0.93513 1.00074 1.22214 1.03813 1.07947 0.93090 1.21735 0.93664 1.00973 0.95174 1.17832 0.94850 0.97276 0.91171 1.21119 0.99714 0.96944 0.91086 1.21058 0.96132 0.99839 1.00135 1.17799 0.95057 0.95823 0.83752 1.91491 1.90783 1.77864 1.51893 1.21033 1.01015 1.02686 0.92327 1.21017 0.94944 0.94703 0.98152 1.73993 1.20506 1.12119 1.01009 1.84783 1.39150 1.55180 1.16941 0.95049 0.92884 0.97887 0.93438 0.91044 0.90237 0.82100 0.84392 0.84481 0.84328 0.84335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.63 9.01 59.84 0.54 4.17 16 2 N -0.58 -13.67 2.91 -182.50 -0.53 -14.20 16 3 C -0.27 -7.00 9.67 -15.06 -0.15 -7.14 16 4 H 0.08 1.97 7.84 -52.49 -0.41 1.56 16 5 C 0.01 0.24 5.13 -17.43 -0.09 0.15 16 6 N -0.90 -25.55 10.59 55.49 0.59 -24.96 16 7 Si 0.91 21.34 29.57 -169.99 -5.03 16.32 16 8 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 9 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 10 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 11 C 0.21 3.96 6.27 -5.19 -0.03 3.92 16 12 C 0.00 -0.07 7.05 -35.38 -0.25 -0.32 16 13 C -0.25 -4.34 10.45 -39.10 -0.41 -4.75 16 14 C 0.04 0.73 7.06 -82.48 -0.58 0.15 16 15 C -0.01 -0.16 5.88 -104.88 -0.62 -0.77 16 16 C -0.07 -0.95 9.70 -39.27 -0.38 -1.34 16 17 C -0.15 -1.82 10.01 -39.56 -0.40 -2.21 16 18 C 0.10 1.15 7.30 -39.34 -0.29 0.86 16 19 F -0.14 -1.71 17.26 2.25 0.04 -1.67 16 20 C -0.15 -1.71 10.01 -39.56 -0.40 -2.11 16 21 C -0.07 -0.86 9.60 -39.27 -0.38 -1.24 16 22 N -0.37 -7.48 11.81 33.32 0.39 -7.09 16 23 O 0.11 2.21 11.18 17.09 0.19 2.40 16 24 H 0.03 0.79 7.42 -51.93 -0.39 0.41 16 25 H 0.05 1.31 7.19 -51.93 -0.37 0.94 16 26 H 0.00 0.05 7.84 -51.93 -0.41 -0.36 16 27 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 28 H 0.07 1.26 8.03 -51.93 -0.42 0.84 16 29 H 0.08 1.23 7.86 -51.93 -0.41 0.83 16 30 H 0.16 2.37 7.58 -52.49 -0.40 1.97 16 31 H 0.14 1.88 7.89 -52.49 -0.41 1.47 16 32 H 0.14 1.31 8.06 -52.48 -0.42 0.89 16 33 H 0.14 1.22 8.06 -52.49 -0.42 0.79 16 34 H 0.14 1.50 7.23 -52.49 -0.38 1.12 16 LS Contribution 305.09 15.07 4.60 4.60 Total: -1.00 -29.98 305.09 -6.75 -36.73 By element: Atomic # 1 Polarization: 2.08 SS G_CDS: -3.57 Total: -1.50 kcal Atomic # 6 Polarization: -7.21 SS G_CDS: -3.42 Total: -10.63 kcal Atomic # 7 Polarization: -46.70 SS G_CDS: 0.45 Total: -46.25 kcal Atomic # 8 Polarization: 2.21 SS G_CDS: 0.19 Total: 2.40 kcal Atomic # 9 Polarization: -1.71 SS G_CDS: 0.04 Total: -1.67 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.03 Total: 16.32 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -29.98 -6.75 -36.73 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340634531.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.292 kcal (2) G-P(sol) polarization free energy of solvation -29.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.728 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds