Wall clock time and date at job start Mon Mar 30 2020 01:34:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.36939 * 120.00270 * 2 1 4 4 H 1.07995 * 119.99808 * 202.35973 * 3 2 1 5 5 C 1.38813 * 119.99445 * 22.36201 * 3 2 1 6 6 N 1.31613 * 120.00465 * 11.34879 * 5 3 2 7 7 Si 1.86809 * 119.99551 * 191.35336 * 5 3 2 8 8 H 1.48503 * 109.47012 * 0.02562 * 7 5 3 9 9 H 1.48501 * 109.47061 * 119.99882 * 7 5 3 10 10 H 1.48504 * 109.46818 * 239.99810 * 7 5 3 11 11 C 1.46500 * 119.99926 * 180.02562 * 2 1 3 12 12 C 1.50707 * 109.46979 * 269.99984 * 11 2 1 13 13 C 1.35221 * 126.66120 * 90.31345 * 12 11 2 14 14 C 1.42297 * 103.93570 * 180.16093 * 13 12 11 15 15 C 1.48402 * 126.93441 * 179.85376 * 14 13 12 16 16 C 1.39352 * 120.08945 * 179.71268 * 15 14 13 17 17 C 1.37967 * 119.90157 * 180.02562 * 16 15 14 18 18 C 1.38556 * 120.09517 * 0.02562 * 17 16 15 19 19 F 1.35106 * 119.90587 * 179.97438 * 18 17 16 20 20 C 1.38563 * 120.19034 * 0.24993 * 18 17 16 21 21 C 1.37961 * 120.09009 * 359.44950 * 20 18 17 22 22 N 1.31001 * 106.12023 * 359.59561 * 14 13 12 23 23 O 1.20900 * 111.42536 * 0.25719 * 22 14 13 24 24 H 1.08996 * 109.47371 * 274.19661 * 1 2 3 25 25 H 1.09001 * 109.47167 * 34.20034 * 1 2 3 26 26 H 1.09000 * 109.47118 * 154.19456 * 1 2 3 27 27 H 0.96996 * 120.00604 * 179.97438 * 6 5 3 28 28 H 1.09001 * 109.47535 * 150.00182 * 11 2 1 29 29 H 1.08997 * 109.47510 * 29.99957 * 11 2 1 30 30 H 1.08001 * 128.03120 * 0.05200 * 13 12 11 31 31 H 1.07994 * 120.04639 * 0.04475 * 16 15 14 32 32 H 1.08007 * 119.94868 * 180.02562 * 17 16 15 33 33 H 1.07998 * 119.95372 * 179.70411 * 20 18 17 34 34 H 1.07999 * 120.04685 * 180.27670 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1687 1.2210 -0.3558 5 6 1.5339 2.3428 0.4574 6 7 0.3844 2.2689 1.0942 7 14 2.3366 4.0048 0.1689 8 1 3.6135 3.8168 -0.5656 9 1 1.4265 4.8616 -0.6328 10 1 2.6076 4.6570 1.4752 11 6 2.1974 -1.2687 -0.0006 12 6 2.4486 -1.7044 1.4201 13 6 1.6465 -2.4850 2.1790 14 6 2.3381 -2.5839 3.4187 15 6 1.9020 -3.3285 4.6261 16 6 2.6990 -3.3341 5.7692 17 6 2.2901 -4.0281 6.8893 18 6 1.0893 -4.7192 6.8786 19 9 0.6929 -5.3979 7.9774 20 6 0.2965 -4.7210 5.7421 21 6 0.6949 -4.0246 4.6198 22 7 3.4399 -1.8897 3.2770 23 8 3.5132 -1.3976 2.1751 24 1 -0.3634 0.0752 1.0249 25 1 -0.3633 0.8500 -0.5776 26 1 -0.3633 -0.9252 -0.4474 27 1 -0.0457 3.0772 1.4142 28 1 3.1499 -1.1383 -0.5143 29 1 1.6084 -2.0282 -0.5147 30 1 0.6999 -2.9287 1.9079 31 1 3.6352 -2.7958 5.7783 32 1 2.9071 -4.0326 7.7759 33 1 -0.6365 -5.2649 5.7364 34 1 0.0743 -4.0227 3.7359 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340634531.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:34 Heat of formation + Delta-G solvation = 47.774390 kcal Electronic energy + Delta-G solvation = -20244.377869 eV Core-core repulsion = 16867.256443 eV Total energy + Delta-G solvation = -3377.121426 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 276.101 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.96957 -45.64504 -40.02290 -37.69742 -35.20036 -34.07842 -32.44364 -32.03803 -30.90475 -28.19812 -27.69979 -24.98983 -24.47316 -23.36440 -23.06874 -21.08225 -18.89766 -18.76237 -18.34525 -18.17302 -17.21469 -16.92895 -16.70908 -16.64797 -15.51648 -15.36076 -15.23924 -15.01905 -14.66022 -14.34304 -14.21048 -13.75561 -13.73075 -13.21121 -12.90491 -12.84890 -12.75711 -12.48310 -12.17945 -12.03157 -11.96269 -11.75190 -11.57868 -10.71404 -10.27099 -10.20686 -9.44583 -8.94669 -7.89803 -5.38959 -0.34227 0.17140 0.74734 1.44590 1.47378 1.49837 1.57321 2.36462 2.48867 2.64257 3.04984 3.16541 3.29497 3.47668 3.73297 3.81863 3.85225 4.17329 4.25680 4.32629 4.36884 4.59640 4.78048 4.84495 4.87113 4.88244 4.95130 5.02503 5.08225 5.27808 5.34910 5.40452 5.62685 5.74359 5.76566 6.26622 7.08726 7.37619 7.76857 8.17150 9.12900 Molecular weight = 276.10amu Principal moments of inertia in cm(-1) A = 0.026963 B = 0.003870 C = 0.003829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.223789 B = 7233.419960 C = 7311.077700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.172 3.828 2 N -0.599 5.599 3 C -0.269 4.269 4 H 0.079 0.921 5 C -0.047 4.047 6 N -0.934 5.934 7 Si 0.965 3.035 8 H -0.262 1.262 9 H -0.287 1.287 10 H -0.299 1.299 11 C 0.212 3.788 12 C -0.021 4.021 13 C -0.237 4.237 14 C 0.045 3.955 15 C -0.042 4.042 16 C -0.078 4.078 17 C -0.151 4.151 18 C 0.096 3.904 19 F -0.140 7.140 20 C -0.144 4.144 21 C -0.064 4.064 22 N -0.398 5.398 23 O 0.075 5.925 24 H 0.000 1.000 25 H 0.024 0.976 26 H 0.047 0.953 27 H 0.248 0.752 28 H 0.079 0.921 29 H 0.120 0.880 30 H 0.193 0.807 31 H 0.130 0.870 32 H 0.159 0.841 33 H 0.169 0.831 34 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.340 -15.423 5.486 16.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.320 5.320 3 C -0.399 4.399 4 H 0.096 0.904 5 C -0.242 4.242 6 N -0.580 5.580 7 Si 0.794 3.206 8 H -0.186 1.186 9 H -0.213 1.213 10 H -0.226 1.226 11 C 0.083 3.917 12 C -0.088 4.088 13 C -0.260 4.260 14 C -0.112 4.112 15 C -0.043 4.043 16 C -0.098 4.098 17 C -0.169 4.169 18 C 0.076 3.924 19 F -0.118 7.118 20 C -0.163 4.163 21 C -0.083 4.083 22 N -0.106 5.106 23 O 0.013 5.987 24 H 0.019 0.981 25 H 0.043 0.957 26 H 0.065 0.935 27 H 0.058 0.942 28 H 0.098 0.902 29 H 0.138 0.862 30 H 0.210 0.790 31 H 0.148 0.852 32 H 0.176 0.824 33 H 0.187 0.813 34 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 0.604 -14.991 6.301 16.272 hybrid contribution -0.408 1.053 0.221 1.151 sum 0.196 -13.938 6.522 15.390 Atomic orbital electron populations 1.20685 0.81668 0.97185 0.97741 1.44433 1.02700 1.01076 1.83758 1.19695 0.98673 0.86142 1.35381 0.90352 1.25814 0.98233 1.02008 0.98172 1.70231 1.19084 1.27585 1.41098 0.85227 0.78484 0.80042 0.76879 1.18607 1.21318 1.22612 1.20076 0.98577 0.88489 0.84547 1.26922 0.86937 0.94687 1.00220 1.22644 1.04223 1.06818 0.92337 1.22279 0.92772 0.99750 0.96358 1.17992 0.96644 0.99011 0.90683 1.21130 0.99590 0.97484 0.91561 1.21226 0.96470 0.99021 1.00184 1.17970 0.95057 0.95368 0.84020 1.91503 1.90717 1.77745 1.51878 1.21333 1.01759 1.01873 0.91291 1.21229 0.93963 0.93786 0.99313 1.73982 1.22127 1.13634 1.00873 1.84733 1.40286 1.56157 1.17524 0.98145 0.95748 0.93461 0.94229 0.90239 0.86228 0.78983 0.85178 0.82386 0.81337 0.82430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 7.77 9.01 127.77 1.15 8.93 16 2 N -0.60 -27.78 2.91 -731.32 -2.13 -29.91 16 3 C -0.27 -14.17 9.67 84.03 0.81 -13.36 16 4 H 0.08 4.00 7.84 -2.91 -0.02 3.98 16 5 C -0.05 -2.55 5.13 84.86 0.44 -2.12 16 6 N -0.93 -54.33 10.59 21.65 0.23 -54.10 16 7 Si 0.97 44.58 29.57 68.60 2.03 46.60 16 8 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 9 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 10 H -0.30 -14.15 7.11 99.48 0.71 -13.45 16 11 C 0.21 7.55 6.27 85.64 0.54 8.08 16 12 C -0.02 -0.80 7.05 24.99 0.18 -0.62 16 13 C -0.24 -7.91 10.45 22.58 0.24 -7.67 16 14 C 0.04 1.59 7.06 42.99 0.30 1.89 16 15 C -0.04 -1.22 5.88 -20.03 -0.12 -1.34 16 16 C -0.08 -2.09 9.70 22.47 0.22 -1.87 16 17 C -0.15 -3.28 10.01 22.28 0.22 -3.06 16 18 C 0.10 2.03 7.30 22.42 0.16 2.19 16 19 F -0.14 -2.96 17.26 44.97 0.78 -2.18 16 20 C -0.14 -2.75 10.01 22.28 0.22 -2.53 16 21 C -0.06 -1.42 9.60 22.47 0.22 -1.20 16 22 N -0.40 -16.16 11.81 -49.45 -0.58 -16.74 16 23 O 0.07 3.18 11.18 71.34 0.80 3.97 16 24 H 0.00 0.01 7.42 -2.39 -0.02 -0.01 16 25 H 0.02 1.20 7.19 -2.39 -0.02 1.19 16 26 H 0.05 1.68 7.84 -2.39 -0.02 1.66 16 27 H 0.25 14.12 8.31 -92.71 -0.77 13.35 16 28 H 0.08 2.69 8.03 -2.39 -0.02 2.67 16 29 H 0.12 3.27 7.86 -2.39 -0.02 3.25 16 30 H 0.19 4.98 7.58 -2.91 -0.02 4.95 16 31 H 0.13 3.59 7.89 -2.91 -0.02 3.56 16 32 H 0.16 2.68 8.06 -2.91 -0.02 2.65 16 33 H 0.17 2.19 8.06 -2.91 -0.02 2.17 16 34 H 0.16 2.83 7.23 -2.91 -0.02 2.81 16 Total: -1.00 -66.09 305.09 6.82 -59.27 By element: Atomic # 1 Polarization: 4.63 SS G_CDS: 1.12 Total: 5.75 kcal Atomic # 6 Polarization: -17.25 SS G_CDS: 4.58 Total: -12.67 kcal Atomic # 7 Polarization: -98.27 SS G_CDS: -2.48 Total: -100.75 kcal Atomic # 8 Polarization: 3.18 SS G_CDS: 0.80 Total: 3.97 kcal Atomic # 9 Polarization: -2.96 SS G_CDS: 0.78 Total: -2.18 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.60 kcal Total: -66.09 6.82 -59.27 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340634531.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.047 kcal (2) G-P(sol) polarization free energy of solvation -66.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.272 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds