Wall clock time and date at job start Mon Mar 30 2020 01:31:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46498 * 109.46930 * 2 1 4 4 C 1.37092 * 120.00125 * 264.74338 * 3 2 1 5 5 H 1.07998 * 120.00280 * 146.16832 * 4 3 2 6 6 C 1.38955 * 120.00010 * 326.17027 * 4 3 2 7 7 N 1.31414 * 119.99827 * 337.68203 * 6 4 3 8 8 Si 1.86796 * 120.00005 * 157.68601 * 6 4 3 9 9 H 1.48500 * 109.47256 * 59.99974 * 8 6 4 10 10 H 1.48503 * 109.47074 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.47151 * 300.00131 * 8 6 4 12 12 C 1.34776 * 119.99628 * 84.75343 * 3 2 1 13 13 O 1.21301 * 119.99883 * 179.97438 * 12 3 2 14 14 C 1.50692 * 120.00660 * 359.97438 * 12 3 2 15 15 C 1.50696 * 109.47576 * 180.02562 * 14 12 3 16 16 C 1.38204 * 120.09015 * 90.00079 * 15 14 12 17 17 F 1.35102 * 119.94813 * 359.72808 * 16 15 14 18 18 C 1.38554 * 120.10128 * 179.70579 * 16 15 14 19 19 C 1.38346 * 120.27694 * 0.02562 * 18 16 15 20 20 C 1.37939 * 120.18332 * 0.02562 * 19 18 16 21 21 C 1.39584 * 120.09014 * 269.72740 * 15 14 12 22 22 C 1.43197 * 120.13917 * 0.25029 * 21 15 14 23 23 N 5.08899 * 135.24168 * 76.63161 * 2 1 3 24 24 H 1.08999 * 109.47316 * 59.99954 * 1 2 3 25 25 H 1.09000 * 109.47551 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47135 * 300.00094 * 1 2 3 27 27 H 1.09004 * 109.47135 * 239.99906 * 2 1 3 28 28 H 1.09005 * 109.46748 * 120.00416 * 2 1 3 29 29 H 0.96997 * 119.99250 * 180.02562 * 7 6 4 30 30 H 1.09003 * 109.46902 * 60.00419 * 14 12 3 31 31 H 1.08997 * 109.47357 * 300.00903 * 14 12 3 32 32 H 1.07999 * 119.86562 * 180.02562 * 18 16 15 33 33 H 1.08010 * 119.90950 * 180.02562 * 19 18 16 34 34 H 1.08000 * 120.05281 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3493 1.9913 -1.1822 5 1 2.1815 3.0506 -1.3088 6 6 2.9007 1.2466 -2.2178 7 7 3.5052 0.1087 -1.9593 8 14 2.7828 1.8630 -3.9771 9 1 3.4562 3.1820 -4.0857 10 1 3.4446 0.8935 -4.8867 11 1 1.3542 2.0038 -4.3576 12 6 2.1422 2.0521 1.1623 13 8 2.5470 3.1956 1.1624 14 6 1.7781 1.3817 2.4619 15 6 2.0052 2.3400 3.6025 16 6 0.9870 3.1775 4.0171 17 9 -0.2118 3.1408 3.3952 18 6 1.1937 4.0544 5.0697 19 6 2.4186 4.0978 5.7112 20 6 3.4433 3.2678 5.3063 21 6 3.2428 2.3802 4.2469 22 6 4.3024 1.5152 3.8233 23 7 5.1436 0.8285 3.4862 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 3.8904 -0.4108 -2.6822 30 1 2.3995 0.4971 2.6010 31 1 0.7286 1.0883 2.4378 32 1 0.3952 4.7069 5.3908 33 1 2.5731 4.7833 6.5314 34 1 4.3986 3.3031 5.8088 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000350076650.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:09 Heat of formation + Delta-G solvation = -19.834759 kcal Electronic energy + Delta-G solvation = -21135.755826 eV Core-core repulsion = 17755.702647 eV Total energy + Delta-G solvation = -3380.053179 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 276.101 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -48.76000 -39.64355 -38.26036 -36.11943 -35.03820 -32.83135 -31.90451 -30.87057 -29.47403 -27.84343 -24.85481 -23.86513 -22.44423 -21.80685 -19.31496 -18.65665 -16.88588 -16.74676 -16.20292 -15.95872 -15.72036 -15.32625 -14.89651 -14.21595 -14.01074 -13.68168 -13.61411 -13.24716 -12.97266 -12.89351 -12.67379 -12.46277 -12.12824 -11.86359 -11.81324 -11.68658 -11.20054 -11.15680 -11.02219 -10.96977 -10.37260 -10.32561 -10.09490 -8.97921 -8.94909 -8.72783 -8.36455 -7.50993 -6.33553 -3.94756 0.71630 1.15911 2.86632 2.99251 3.19086 3.25539 3.29214 3.76180 3.85876 3.97628 4.16398 4.37476 4.64345 4.80508 4.83727 4.96009 5.04924 5.21863 5.50219 5.63308 5.72851 5.77986 5.90485 6.03772 6.08172 6.14485 6.20240 6.26079 6.36559 6.51474 6.75811 6.88347 7.25717 7.59341 7.69358 8.21886 8.48773 9.16393 9.39316 9.97752 10.70061 Molecular weight = 276.10amu Principal moments of inertia in cm(-1) A = 0.021863 B = 0.005751 C = 0.005328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.380119 B = 4867.926058 C = 5253.644797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.093 3.907 3 N -0.435 5.435 4 C -0.308 4.308 5 H 0.093 0.907 6 C 0.035 3.965 7 N -0.867 5.867 8 Si 0.919 3.081 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.273 1.273 12 C 0.461 3.539 13 O -0.576 6.576 14 C -0.113 4.113 15 C -0.031 4.031 16 C 0.110 3.890 17 F -0.130 7.130 18 C -0.126 4.126 19 C -0.102 4.102 20 C -0.082 4.082 21 C 0.010 3.990 22 C 0.252 3.748 23 N -0.401 5.401 24 H 0.058 0.942 25 H 0.051 0.949 26 H 0.042 0.958 27 H 0.115 0.885 28 H 0.046 0.954 29 H 0.269 0.731 30 H 0.093 0.907 31 H 0.100 0.900 32 H 0.140 0.860 33 H 0.140 0.860 34 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.045 2.342 13.773 15.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.032 4.032 3 N -0.154 5.154 4 C -0.436 4.436 5 H 0.111 0.889 6 C -0.169 4.169 7 N -0.505 5.505 8 Si 0.746 3.254 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.198 1.198 12 C 0.248 3.752 13 O -0.459 6.459 14 C -0.153 4.153 15 C -0.035 4.035 16 C 0.091 3.909 17 F -0.109 7.109 18 C -0.146 4.146 19 C -0.120 4.120 20 C -0.103 4.103 21 C 0.007 3.993 22 C -0.063 4.063 23 N -0.076 5.076 24 H 0.077 0.923 25 H 0.070 0.930 26 H 0.061 0.939 27 H 0.133 0.867 28 H 0.064 0.936 29 H 0.079 0.921 30 H 0.111 0.889 31 H 0.118 0.882 32 H 0.158 0.842 33 H 0.158 0.842 34 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -4.474 1.667 13.077 13.921 hybrid contribution -0.583 0.326 -0.956 1.166 sum -5.056 1.993 12.120 13.283 Atomic orbital electron populations 1.22212 0.98005 1.00444 1.01630 1.21637 0.91876 0.85454 1.04191 1.43479 1.55356 1.11833 1.04707 1.19429 1.40010 0.95535 0.88590 0.88931 1.25354 0.94415 0.96506 1.00602 1.69925 1.32274 1.15263 1.33069 0.86116 0.78655 0.78770 0.81902 1.19726 1.20954 1.19825 1.19880 0.83071 0.88107 0.84093 1.90542 1.50363 1.18466 1.86570 1.20833 1.04207 0.97689 0.92553 1.19544 0.91695 0.96767 0.95518 1.17205 0.81511 0.98109 0.94125 1.91516 1.42351 1.95410 1.81600 1.21286 0.99208 0.98583 0.95496 1.20823 0.91859 0.99069 1.00227 1.21136 0.99899 0.94155 0.95116 1.15597 0.88822 0.96916 0.97979 1.25456 0.93341 0.93673 0.93873 1.81289 1.09983 1.09266 1.07043 0.92288 0.92974 0.93856 0.86720 0.93591 0.92109 0.88869 0.88214 0.84195 0.84194 0.84497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.00 10.15 37.16 0.38 -2.63 16 2 C 0.09 2.05 5.43 -4.04 -0.02 2.03 16 3 N -0.44 -11.23 2.56 -114.81 -0.29 -11.53 16 4 C -0.31 -8.68 8.98 -14.93 -0.13 -8.81 16 5 H 0.09 2.73 7.70 -52.49 -0.40 2.32 16 6 C 0.04 0.95 4.92 -17.46 -0.09 0.87 16 7 N -0.87 -23.84 11.33 55.50 0.63 -23.21 16 8 Si 0.92 20.89 29.61 -169.99 -5.03 15.86 16 9 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 10 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 11 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 12 C 0.46 11.42 7.59 -10.99 -0.08 11.34 16 13 O -0.58 -16.12 15.86 5.54 0.09 -16.03 16 14 C -0.11 -2.14 3.86 -29.04 -0.11 -2.26 16 15 C -0.03 -0.53 4.41 -104.13 -0.46 -0.99 16 16 C 0.11 1.65 7.23 -39.48 -0.29 1.37 16 17 F -0.13 -2.10 16.47 2.25 0.04 -2.06 16 18 C -0.13 -1.41 10.02 -39.43 -0.39 -1.80 16 19 C -0.10 -0.97 10.03 -39.65 -0.40 -1.37 16 20 C -0.08 -0.93 9.75 -39.16 -0.38 -1.32 16 21 C 0.01 0.16 5.73 -106.94 -0.61 -0.45 16 22 C 0.25 4.50 13.80 -22.44 -0.31 4.19 16 23 N -0.40 -8.00 18.54 41.88 0.78 -7.23 16 24 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 25 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 26 H 0.04 0.73 6.59 -51.93 -0.34 0.39 16 27 H 0.12 2.81 5.34 -51.93 -0.28 2.53 16 28 H 0.05 0.94 6.66 -51.93 -0.35 0.59 16 29 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 30 H 0.09 1.73 6.36 -51.93 -0.33 1.40 16 31 H 0.10 1.69 6.03 -51.93 -0.31 1.38 16 32 H 0.14 1.17 8.06 -52.49 -0.42 0.75 16 33 H 0.14 0.82 8.06 -52.48 -0.42 0.40 16 34 H 0.14 1.18 8.06 -52.49 -0.42 0.76 16 LS Contribution 305.04 15.07 4.60 4.60 Total: -1.00 -33.25 305.04 -5.36 -38.61 By element: Atomic # 1 Polarization: 4.09 SS G_CDS: -3.26 Total: 0.83 kcal Atomic # 6 Polarization: 3.07 SS G_CDS: -2.90 Total: 0.17 kcal Atomic # 7 Polarization: -43.08 SS G_CDS: 1.11 Total: -41.97 kcal Atomic # 8 Polarization: -16.12 SS G_CDS: 0.09 Total: -16.03 kcal Atomic # 9 Polarization: -2.10 SS G_CDS: 0.04 Total: -2.06 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.03 Total: 15.86 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -33.25 -5.36 -38.61 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000350076650.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.778 kcal (2) G-P(sol) polarization free energy of solvation -33.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds