Wall clock time and date at job start Mon Mar 30 2020 01:31:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46498 * 109.46930 * 2 1 4 4 C 1.37092 * 120.00125 * 264.74338 * 3 2 1 5 5 H 1.07998 * 120.00280 * 146.16832 * 4 3 2 6 6 C 1.38955 * 120.00010 * 326.17027 * 4 3 2 7 7 N 1.31414 * 119.99827 * 337.68203 * 6 4 3 8 8 Si 1.86796 * 120.00005 * 157.68601 * 6 4 3 9 9 H 1.48500 * 109.47256 * 59.99974 * 8 6 4 10 10 H 1.48503 * 109.47074 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.47151 * 300.00131 * 8 6 4 12 12 C 1.34776 * 119.99628 * 84.75343 * 3 2 1 13 13 O 1.21301 * 119.99883 * 179.97438 * 12 3 2 14 14 C 1.50692 * 120.00660 * 359.97438 * 12 3 2 15 15 C 1.50696 * 109.47576 * 180.02562 * 14 12 3 16 16 C 1.38204 * 120.09015 * 90.00079 * 15 14 12 17 17 F 1.35102 * 119.94813 * 359.72808 * 16 15 14 18 18 C 1.38554 * 120.10128 * 179.70579 * 16 15 14 19 19 C 1.38346 * 120.27694 * 0.02562 * 18 16 15 20 20 C 1.37939 * 120.18332 * 0.02562 * 19 18 16 21 21 C 1.39584 * 120.09014 * 269.72740 * 15 14 12 22 22 C 1.43197 * 120.13917 * 0.25029 * 21 15 14 23 23 N 5.08899 * 135.24168 * 76.63161 * 2 1 3 24 24 H 1.08999 * 109.47316 * 59.99954 * 1 2 3 25 25 H 1.09000 * 109.47551 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47135 * 300.00094 * 1 2 3 27 27 H 1.09004 * 109.47135 * 239.99906 * 2 1 3 28 28 H 1.09005 * 109.46748 * 120.00416 * 2 1 3 29 29 H 0.96997 * 119.99250 * 180.02562 * 7 6 4 30 30 H 1.09003 * 109.46902 * 60.00419 * 14 12 3 31 31 H 1.08997 * 109.47357 * 300.00903 * 14 12 3 32 32 H 1.07999 * 119.86562 * 180.02562 * 18 16 15 33 33 H 1.08010 * 119.90950 * 180.02562 * 19 18 16 34 34 H 1.08000 * 120.05281 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3493 1.9913 -1.1822 5 1 2.1815 3.0506 -1.3088 6 6 2.9007 1.2466 -2.2178 7 7 3.5052 0.1087 -1.9593 8 14 2.7828 1.8630 -3.9771 9 1 3.4562 3.1820 -4.0857 10 1 3.4446 0.8935 -4.8867 11 1 1.3542 2.0038 -4.3576 12 6 2.1422 2.0521 1.1623 13 8 2.5470 3.1956 1.1624 14 6 1.7781 1.3817 2.4619 15 6 2.0052 2.3400 3.6025 16 6 0.9870 3.1775 4.0171 17 9 -0.2118 3.1408 3.3952 18 6 1.1937 4.0544 5.0697 19 6 2.4186 4.0978 5.7112 20 6 3.4433 3.2678 5.3063 21 6 3.2428 2.3802 4.2469 22 6 4.3024 1.5152 3.8233 23 7 5.1436 0.8285 3.4862 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 3.8904 -0.4108 -2.6822 30 1 2.3995 0.4971 2.6010 31 1 0.7286 1.0883 2.4378 32 1 0.3952 4.7069 5.3908 33 1 2.5731 4.7833 6.5314 34 1 4.3986 3.3031 5.8088 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000350076650.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:08 Heat of formation + Delta-G solvation = -40.152238 kcal Electronic energy + Delta-G solvation = -21136.636858 eV Core-core repulsion = 17755.702647 eV Total energy + Delta-G solvation = -3380.934211 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 276.101 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.90082 -41.01792 -39.85188 -37.49405 -36.97662 -34.37412 -33.63844 -31.93066 -31.24014 -29.24444 -26.72477 -24.99890 -24.07503 -23.07620 -20.90316 -19.97906 -18.83177 -17.97221 -17.94018 -17.06996 -16.99857 -16.75827 -16.47366 -15.89553 -15.75848 -15.01885 -14.84470 -14.62505 -14.59071 -14.41838 -14.11406 -13.81123 -13.66713 -13.62371 -13.13968 -12.93166 -12.89659 -12.72329 -12.59544 -12.27996 -12.16552 -12.15064 -11.85771 -10.94427 -10.53458 -9.94160 -9.67498 -9.53133 -8.38968 -6.09133 -0.34849 0.14766 1.35256 1.38017 1.49128 1.50043 1.82506 1.95795 2.25579 2.60436 2.76936 2.96108 3.10478 3.36092 3.52134 3.74725 3.97941 4.00944 4.19968 4.30476 4.38275 4.45220 4.58324 4.61306 4.79460 4.95192 4.99464 5.13384 5.23633 5.25519 5.26719 5.40983 5.51498 5.81705 6.14533 6.34355 6.46663 7.11585 7.41008 7.99585 8.63215 Molecular weight = 276.10amu Principal moments of inertia in cm(-1) A = 0.021863 B = 0.005751 C = 0.005328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.380119 B = 4867.926058 C = 5253.644797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.091 3.909 3 N -0.451 5.451 4 C -0.343 4.343 5 H 0.067 0.933 6 C 0.001 3.999 7 N -0.890 5.890 8 Si 0.984 3.016 9 H -0.277 1.277 10 H -0.271 1.271 11 H -0.261 1.261 12 C 0.449 3.551 13 O -0.618 6.618 14 C -0.098 4.098 15 C -0.062 4.062 16 C 0.086 3.914 17 F -0.144 7.144 18 C -0.110 4.110 19 C -0.079 4.079 20 C -0.068 4.068 21 C -0.018 4.018 22 C 0.270 3.730 23 N -0.456 5.456 24 H 0.044 0.956 25 H 0.086 0.914 26 H 0.054 0.946 27 H 0.091 0.909 28 H 0.057 0.943 29 H 0.274 0.726 30 H 0.091 0.909 31 H 0.116 0.884 32 H 0.176 0.824 33 H 0.194 0.806 34 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.075 3.417 15.725 17.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.033 4.033 3 N -0.170 5.170 4 C -0.471 4.471 5 H 0.084 0.916 6 C -0.201 4.201 7 N -0.528 5.528 8 Si 0.807 3.193 9 H -0.202 1.202 10 H -0.196 1.196 11 H -0.185 1.185 12 C 0.239 3.761 13 O -0.504 6.504 14 C -0.138 4.138 15 C -0.066 4.066 16 C 0.066 3.934 17 F -0.122 7.122 18 C -0.129 4.129 19 C -0.096 4.096 20 C -0.088 4.088 21 C -0.021 4.021 22 C -0.044 4.044 23 N -0.132 5.132 24 H 0.063 0.937 25 H 0.105 0.895 26 H 0.073 0.927 27 H 0.109 0.891 28 H 0.075 0.925 29 H 0.084 0.916 30 H 0.109 0.891 31 H 0.134 0.866 32 H 0.193 0.807 33 H 0.211 0.789 34 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -5.520 2.707 15.040 16.248 hybrid contribution -0.255 0.069 -1.442 1.466 sum -5.775 2.776 13.598 15.032 Atomic orbital electron populations 1.22095 0.94827 1.02667 1.01468 1.21722 0.94469 0.83560 1.03501 1.43785 1.55588 1.13002 1.04632 1.19395 1.42000 0.94972 0.90704 0.91562 1.26144 0.93358 0.96543 1.04095 1.70009 1.32308 1.16092 1.34380 0.85150 0.79188 0.78015 0.76941 1.20231 1.19604 1.18547 1.20782 0.81964 0.87736 0.85665 1.90481 1.52049 1.20376 1.87534 1.20623 1.04925 0.97755 0.90483 1.19470 0.93285 0.98057 0.95828 1.17555 0.80838 0.99263 0.95706 1.91476 1.42955 1.95606 1.82189 1.21789 1.00878 0.96926 0.93291 1.21451 0.90007 0.98012 1.00143 1.21608 1.01851 0.92266 0.93102 1.15848 0.87686 0.98451 1.00153 1.26007 0.93000 0.92917 0.92526 1.81280 1.11853 1.11148 1.08887 0.93719 0.89481 0.92687 0.89062 0.92474 0.91631 0.89127 0.86554 0.80699 0.78912 0.81421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.49 10.15 71.98 0.73 -4.76 16 2 C 0.09 4.11 5.43 86.38 0.47 4.58 16 3 N -0.45 -24.23 2.56 -635.53 -1.63 -25.86 16 4 C -0.34 -20.17 8.98 84.04 0.75 -19.42 16 5 H 0.07 4.14 7.70 -2.91 -0.02 4.12 16 6 C 0.00 0.05 4.92 84.93 0.42 0.46 16 7 N -0.89 -50.07 11.33 21.67 0.25 -49.83 16 8 Si 0.98 43.55 29.61 68.60 2.03 45.58 16 9 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 10 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 11 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 12 C 0.45 23.13 7.59 87.65 0.66 23.80 16 13 O -0.62 -36.13 15.86 -3.10 -0.05 -36.18 16 14 C -0.10 -3.82 3.86 29.10 0.11 -3.70 16 15 C -0.06 -2.09 4.41 -19.55 -0.09 -2.17 16 16 C 0.09 2.44 7.23 22.34 0.16 2.61 16 17 F -0.14 -4.52 16.47 44.97 0.74 -3.78 16 18 C -0.11 -2.00 10.02 22.37 0.22 -1.77 16 19 C -0.08 -1.07 10.03 22.22 0.22 -0.85 16 20 C -0.07 -1.30 9.75 22.54 0.22 -1.08 16 21 C -0.02 -0.54 5.73 -21.37 -0.12 -0.66 16 22 C 0.27 9.80 13.80 88.32 1.22 11.02 16 23 N -0.46 -18.86 18.54 19.02 0.35 -18.51 16 24 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 25 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 26 H 0.05 1.83 6.59 -2.38 -0.02 1.81 16 27 H 0.09 4.59 5.34 -2.38 -0.01 4.58 16 28 H 0.06 2.39 6.66 -2.38 -0.02 2.38 16 29 H 0.27 14.38 8.31 -92.71 -0.77 13.61 16 30 H 0.09 3.49 6.36 -2.39 -0.02 3.47 16 31 H 0.12 3.98 6.03 -2.39 -0.01 3.97 16 32 H 0.18 1.96 8.06 -2.91 -0.02 1.94 16 33 H 0.19 0.73 8.06 -2.91 -0.02 0.71 16 34 H 0.17 2.15 8.06 -2.91 -0.02 2.13 16 Total: -1.00 -78.05 305.04 7.83 -70.22 By element: Atomic # 1 Polarization: 9.14 SS G_CDS: 1.15 Total: 10.28 kcal Atomic # 6 Polarization: 3.07 SS G_CDS: 4.99 Total: 8.06 kcal Atomic # 7 Polarization: -93.17 SS G_CDS: -1.03 Total: -94.19 kcal Atomic # 8 Polarization: -36.13 SS G_CDS: -0.05 Total: -36.18 kcal Atomic # 9 Polarization: -4.52 SS G_CDS: 0.74 Total: -3.78 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.58 kcal Total: -78.05 7.83 -70.22 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000350076650.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.068 kcal (2) G-P(sol) polarization free energy of solvation -78.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds