Wall clock time and date at job start Mon Mar 30 2020 01:35:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46498 * 120.00170 * 2 1 4 4 C 1.50701 * 109.47200 * 270.00071 * 3 2 1 5 5 H 1.08003 * 119.99868 * 359.97438 * 4 3 2 6 6 C 1.37881 * 120.00331 * 179.97438 * 4 3 2 7 7 N 1.31512 * 119.99561 * 0.02562 * 6 4 3 8 8 Si 1.86795 * 120.00075 * 179.97438 * 6 4 3 9 9 H 1.48500 * 109.47343 * 0.02562 * 8 6 4 10 10 H 1.48503 * 109.46668 * 120.00105 * 8 6 4 11 11 H 1.48496 * 109.47539 * 240.00155 * 8 6 4 12 12 C 1.34775 * 120.00414 * 179.97438 * 2 1 3 13 13 O 1.21277 * 120.00502 * 179.97438 * 12 2 1 14 14 C 1.50702 * 119.99774 * 0.02562 * 12 2 1 15 15 C 1.50695 * 109.47433 * 179.97438 * 14 12 2 16 16 C 1.38205 * 120.09117 * 89.99873 * 15 14 12 17 17 F 1.35099 * 119.94568 * 359.72633 * 16 15 14 18 18 C 1.38555 * 120.09903 * 179.70702 * 16 15 14 19 19 C 1.38345 * 120.28149 * 0.02562 * 18 16 15 20 20 C 1.37933 * 120.17854 * 0.02562 * 19 18 16 21 21 C 1.39588 * 120.09297 * 269.72790 * 15 14 12 22 22 C 1.43196 * 120.13479 * 0.24699 * 21 15 14 23 23 N 4.71440 * 96.34252 * 227.17765 * 2 1 3 24 24 H 1.09000 * 109.47030 * 270.00227 * 1 2 3 25 25 H 1.08996 * 109.47182 * 30.00131 * 1 2 3 26 26 H 1.08999 * 109.46792 * 150.00126 * 1 2 3 27 27 H 1.09002 * 109.47078 * 29.99682 * 3 2 1 28 28 H 1.09001 * 109.47511 * 149.99836 * 3 2 1 29 29 H 0.97002 * 119.99848 * 180.02562 * 7 6 4 30 30 H 1.09001 * 109.47143 * 59.99842 * 14 12 2 31 31 H 1.09000 * 109.46930 * 300.00135 * 14 12 2 32 32 H 1.08007 * 119.85576 * 180.02562 * 18 16 15 33 33 H 1.07996 * 119.90805 * 180.02562 * 19 18 16 34 34 H 1.08006 * 120.04530 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7037 -1.4208 5 1 2.0981 1.0957 -2.2417 6 6 3.1261 2.8780 -1.6728 7 7 3.5534 3.6180 -0.6732 8 14 3.4380 3.4168 -3.4340 9 1 2.8609 2.4163 -4.3674 10 1 2.7999 4.7372 -3.6679 11 1 4.9005 3.5256 -3.6667 12 6 2.1390 -1.1671 0.0005 13 8 3.3517 -1.1672 0.0001 14 6 1.3855 -2.4723 0.0005 15 6 2.3647 -3.6177 0.0005 16 6 2.8150 -4.1444 1.1963 17 9 2.3808 -3.6279 2.3667 18 6 3.7107 -5.2015 1.1965 19 6 4.1598 -5.7355 0.0019 20 6 3.7188 -5.2181 -1.1982 21 6 2.8152 -4.1534 -1.2072 22 6 2.3527 -3.6133 -2.4502 23 7 1.9858 -3.1849 -3.4367 24 1 -0.3633 0.0000 1.0277 25 1 -0.3633 0.8899 -0.5138 26 1 -0.3633 -0.8900 -0.5138 27 1 1.6084 2.0284 0.5138 28 1 3.1499 1.1384 0.5139 29 1 4.0296 4.4443 -0.8504 30 1 0.7591 -2.5302 -0.8897 31 1 0.7585 -2.5298 0.8903 32 1 4.0597 -5.6103 2.1333 33 1 4.8576 -6.5597 0.0091 34 1 4.0711 -5.6364 -2.1296 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000350099840.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:02 Heat of formation + Delta-G solvation = -46.408142 kcal Electronic energy + Delta-G solvation = -20763.221082 eV Core-core repulsion = 17382.015595 eV Total energy + Delta-G solvation = -3381.205487 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 276.101 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.93059 -41.15526 -39.91934 -37.53411 -36.66526 -34.86788 -34.02538 -31.97379 -30.35221 -28.64808 -27.30171 -25.30091 -24.71947 -22.92237 -20.45076 -19.88441 -18.77599 -18.06893 -17.96954 -17.36888 -17.04923 -16.70108 -16.54296 -16.29770 -15.95381 -15.04455 -14.88025 -14.62032 -14.46550 -14.35822 -14.18620 -13.86451 -13.70006 -13.52895 -13.29066 -13.19748 -12.98437 -12.84869 -12.62332 -12.57588 -12.29329 -12.20662 -11.75114 -10.82674 -10.70284 -9.97946 -9.71040 -9.49772 -8.28786 -6.43249 -0.38058 0.10570 1.29452 1.31690 1.43753 1.47715 1.71407 1.80982 2.24041 2.37066 2.59309 2.82789 3.00404 3.30750 3.41724 3.69576 3.74954 3.96840 4.20799 4.29750 4.38895 4.39915 4.58137 4.65130 4.87151 4.89977 4.97646 5.09144 5.16702 5.21035 5.25566 5.48668 5.76287 5.78774 5.99757 6.31810 6.61441 6.69317 7.20870 7.37456 8.78542 Molecular weight = 276.10amu Principal moments of inertia in cm(-1) A = 0.020034 B = 0.005348 C = 0.004861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.266038 B = 5234.202216 C = 5759.084290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.611 5.611 3 C 0.261 3.739 4 C -0.543 4.543 5 H 0.044 0.956 6 C 0.012 3.988 7 N -0.924 5.924 8 Si 0.963 3.037 9 H -0.276 1.276 10 H -0.263 1.263 11 H -0.277 1.277 12 C 0.498 3.502 13 O -0.584 6.584 14 C -0.102 4.102 15 C -0.069 4.069 16 C 0.090 3.910 17 F -0.141 7.141 18 C -0.112 4.112 19 C -0.077 4.077 20 C -0.070 4.070 21 C -0.014 4.014 22 C 0.270 3.730 23 N -0.453 5.453 24 H 0.078 0.922 25 H 0.067 0.933 26 H 0.087 0.913 27 H 0.027 0.973 28 H 0.001 0.999 29 H 0.269 0.731 30 H 0.110 0.890 31 H 0.136 0.864 32 H 0.174 0.826 33 H 0.190 0.810 34 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.803 -22.042 4.511 22.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.343 5.343 3 C 0.139 3.861 4 C -0.582 4.582 5 H 0.062 0.938 6 C -0.187 4.187 7 N -0.564 5.564 8 Si 0.787 3.213 9 H -0.201 1.201 10 H -0.188 1.188 11 H -0.203 1.203 12 C 0.287 3.713 13 O -0.464 6.464 14 C -0.141 4.141 15 C -0.073 4.073 16 C 0.071 3.929 17 F -0.120 7.120 18 C -0.131 4.131 19 C -0.095 4.095 20 C -0.091 4.091 21 C -0.018 4.018 22 C -0.045 4.045 23 N -0.129 5.129 24 H 0.097 0.903 25 H 0.086 0.914 26 H 0.105 0.895 27 H 0.045 0.955 28 H 0.019 0.981 29 H 0.078 0.922 30 H 0.128 0.872 31 H 0.154 0.846 32 H 0.191 0.809 33 H 0.208 0.792 34 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -3.713 -21.151 3.072 21.693 hybrid contribution 0.189 1.139 -0.259 1.184 sum -3.524 -20.011 2.813 20.513 Atomic orbital electron populations 1.21972 0.77913 1.03833 1.02965 1.48181 1.08469 1.06441 1.71180 1.18769 0.91227 0.80193 0.95876 1.21658 1.37053 1.06551 0.92910 0.93810 1.25781 0.94820 0.96336 1.01787 1.70038 1.38798 1.14782 1.32748 0.85445 0.78149 0.78440 0.79250 1.20089 1.18805 1.20294 1.20944 0.87894 0.86037 0.76454 1.90643 1.15979 1.87947 1.51873 1.20734 0.97676 0.88613 1.07085 1.19401 0.99315 0.96392 0.92165 1.17514 0.98951 0.96613 0.79826 1.91491 1.88407 1.86466 1.45622 1.21797 0.94883 0.93994 1.02468 1.21444 0.98700 1.00166 0.89164 1.21608 0.93152 0.92685 1.01634 1.15819 1.01986 0.99473 0.84489 1.25936 0.92957 0.92649 0.92962 1.81288 1.09804 1.08974 1.12790 0.90337 0.91425 0.89468 0.95483 0.98078 0.92212 0.87198 0.84617 0.80870 0.79244 0.81641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.40 10.24 127.77 1.31 3.70 16 2 N -0.61 -27.41 2.86 -851.14 -2.43 -29.85 16 3 C 0.26 14.64 5.16 85.63 0.44 15.09 16 4 C -0.54 -32.90 9.39 25.60 0.24 -32.66 16 5 H 0.04 2.70 7.81 -2.91 -0.02 2.68 16 6 C 0.01 0.73 5.46 84.66 0.46 1.19 16 7 N -0.92 -57.13 13.29 21.45 0.28 -56.85 16 8 Si 0.96 47.04 29.54 68.60 2.03 49.07 16 9 H -0.28 -13.51 7.11 99.48 0.71 -12.80 16 10 H -0.26 -11.99 7.11 99.48 0.71 -11.29 16 11 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 12 C 0.50 21.68 7.67 87.66 0.67 22.36 16 13 O -0.58 -30.90 15.61 -3.02 -0.05 -30.94 16 14 C -0.10 -3.05 3.80 29.10 0.11 -2.94 16 15 C -0.07 -1.89 4.41 -19.55 -0.09 -1.98 16 16 C 0.09 2.15 7.23 22.34 0.16 2.32 16 17 F -0.14 -3.73 16.47 44.97 0.74 -2.99 16 18 C -0.11 -1.71 10.02 22.37 0.22 -1.48 16 19 C -0.08 -0.87 10.03 22.22 0.22 -0.64 16 20 C -0.07 -1.14 9.75 22.54 0.22 -0.92 16 21 C -0.01 -0.36 5.73 -21.37 -0.12 -0.48 16 22 C 0.27 8.46 13.80 88.33 1.22 9.68 16 23 N -0.45 -16.57 18.54 19.01 0.35 -16.22 16 24 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 25 H 0.07 2.26 8.07 -2.39 -0.02 2.25 16 26 H 0.09 2.21 6.44 -2.39 -0.02 2.19 16 27 H 0.03 1.53 8.07 -2.39 -0.02 1.51 16 28 H 0.00 0.07 7.42 -2.39 -0.02 0.05 16 29 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 30 H 0.11 3.04 6.34 -2.39 -0.02 3.03 16 31 H 0.14 3.23 7.61 -2.39 -0.02 3.21 16 32 H 0.17 1.54 8.06 -2.91 -0.02 1.51 16 33 H 0.19 0.42 8.06 -2.91 -0.02 0.40 16 34 H 0.17 1.76 8.06 -2.91 -0.02 1.74 16 Total: -1.00 -83.10 312.71 7.13 -75.96 By element: Atomic # 1 Polarization: -2.54 SS G_CDS: 1.13 Total: -1.41 kcal Atomic # 6 Polarization: 8.15 SS G_CDS: 5.07 Total: 13.23 kcal Atomic # 7 Polarization: -101.12 SS G_CDS: -1.79 Total: -102.91 kcal Atomic # 8 Polarization: -30.90 SS G_CDS: -0.05 Total: -30.94 kcal Atomic # 9 Polarization: -3.73 SS G_CDS: 0.74 Total: -2.99 kcal Atomic # 14 Polarization: 47.04 SS G_CDS: 2.03 Total: 49.07 kcal Total: -83.10 7.13 -75.96 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000350099840.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.555 kcal (2) G-P(sol) polarization free energy of solvation -83.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds