Wall clock time and date at job start Mon Mar 30 2020 01:28:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.46983 * 2 1 4 4 C 1.50700 * 109.47433 * 239.99767 * 2 1 3 5 5 H 1.07995 * 120.00109 * 240.00043 * 4 2 1 6 6 C 1.37873 * 119.99681 * 60.00380 * 4 2 1 7 7 N 1.31521 * 120.00364 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99840 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47183 * 60.00003 * 8 6 4 10 10 H 1.48496 * 109.47283 * 179.97438 * 8 6 4 11 11 H 1.48501 * 109.47136 * 299.99823 * 8 6 4 12 12 N 1.46506 * 109.46691 * 119.99739 * 2 1 3 13 13 C 1.34773 * 119.99969 * 274.72265 * 12 2 1 14 14 O 1.21281 * 120.00220 * 0.02562 * 13 12 2 15 15 C 1.50706 * 120.00080 * 180.02562 * 13 12 2 16 16 C 1.50690 * 109.47185 * 180.02562 * 15 13 12 17 17 C 1.38208 * 120.09145 * 90.00243 * 16 15 13 18 18 F 1.35096 * 119.94902 * 359.97438 * 17 16 15 19 19 C 1.38553 * 120.09788 * 179.97438 * 17 16 15 20 20 C 1.38343 * 120.28235 * 0.02562 * 19 17 16 21 21 C 1.37935 * 120.18276 * 0.02562 * 20 19 17 22 22 C 1.39585 * 120.09082 * 269.72673 * 16 15 13 23 23 C 1.43196 * 120.13535 * 359.97438 * 22 16 15 24 24 N 5.63478 * 141.25229 * 78.94275 * 2 1 3 25 25 H 1.09002 * 109.46832 * 60.00240 * 1 2 3 26 26 H 1.09001 * 109.47659 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47574 * 300.00469 * 1 2 3 28 28 H 0.96994 * 119.99652 * 180.02562 * 7 6 4 29 29 H 0.97005 * 119.99811 * 95.00317 * 12 2 1 30 30 H 1.09004 * 109.46762 * 300.00389 * 15 13 12 31 31 H 1.08998 * 109.46924 * 59.99727 * 15 13 12 32 32 H 1.07996 * 119.85787 * 180.02562 * 19 17 16 33 33 H 1.08005 * 119.91422 * 180.02562 * 20 19 17 34 34 H 1.07995 * 120.05671 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6994 -0.2394 -2.4826 7 7 0.9429 0.8297 -2.6034 8 14 2.3215 -1.1204 -4.0078 9 1 1.8259 -2.5203 -4.0077 10 1 1.8262 -0.4207 -5.2204 11 1 3.8065 -1.1210 -4.0080 12 7 2.0182 -0.6906 1.1963 13 6 2.1522 -0.0169 2.3558 14 8 1.8681 1.1610 2.4091 15 6 2.6550 -0.7271 3.5862 16 6 2.7114 0.2427 4.7382 17 6 1.6139 0.4039 5.5627 18 9 0.4889 -0.3086 5.3351 19 6 1.6658 1.2952 6.6223 20 6 2.8142 2.0287 6.8612 21 6 3.9159 1.8778 6.0451 22 6 3.8741 0.9765 4.9790 23 6 5.0174 0.8101 4.1330 24 7 5.9246 0.6764 3.4613 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 0.7083 1.1608 -3.4844 29 1 2.2489 -1.6318 1.1527 30 1 1.9800 -1.5464 3.8341 31 1 3.6523 -1.1232 3.3951 32 1 0.8061 1.4178 7.2643 33 1 2.8482 2.7215 7.6891 34 1 4.8114 2.4511 6.2338 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352113776.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:37 Heat of formation + Delta-G solvation = -33.917103 kcal Electronic energy + Delta-G solvation = -20518.385719 eV Core-core repulsion = 17137.721884 eV Total energy + Delta-G solvation = -3380.663835 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 276.101 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -48.99162 -39.92556 -38.53160 -36.39495 -34.86002 -33.07087 -32.34898 -31.11887 -29.34013 -27.40484 -25.24617 -24.19141 -22.54894 -20.96331 -19.51651 -19.18948 -17.25259 -17.03553 -16.33617 -16.07273 -15.84930 -15.42206 -15.14573 -14.46112 -14.27622 -13.91933 -13.81653 -13.54122 -13.16323 -12.99916 -12.71844 -12.43186 -12.26376 -12.07366 -11.79142 -11.59027 -11.40449 -11.07331 -10.94084 -10.71945 -10.32735 -10.22724 -9.36166 -9.06940 -9.03516 -8.80726 -8.54598 -7.93952 -6.11661 -4.21125 0.47956 0.91865 2.59608 2.75382 3.26404 3.30060 3.31627 3.33566 3.51801 3.68864 4.06921 4.18097 4.36404 4.45525 4.58306 4.64928 4.99981 5.20424 5.24280 5.32719 5.44102 5.54810 5.76122 5.84232 5.94412 5.99402 6.52936 6.82704 6.96643 7.14848 7.41987 7.43558 7.54363 7.68847 7.91149 8.14933 8.62549 8.76653 9.07439 9.46134 10.94300 Molecular weight = 276.10amu Principal moments of inertia in cm(-1) A = 0.025761 B = 0.004487 C = 0.004087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.641027 B = 6238.078559 C = 6849.101479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.265 3.735 3 H 0.048 0.952 4 C -0.535 4.535 5 H 0.060 0.940 6 C 0.067 3.933 7 N -0.884 5.884 8 Si 0.902 3.098 9 H -0.276 1.276 10 H -0.285 1.285 11 H -0.276 1.276 12 N -0.706 5.706 13 C 0.505 3.495 14 O -0.546 6.546 15 C -0.119 4.119 16 C -0.042 4.042 17 C 0.113 3.887 18 F -0.129 7.129 19 C -0.124 4.124 20 C -0.096 4.096 21 C -0.081 4.081 22 C 0.011 3.989 23 C 0.251 3.749 24 N -0.400 5.400 25 H 0.090 0.910 26 H 0.027 0.973 27 H 0.015 0.985 28 H 0.265 0.735 29 H 0.389 0.611 30 H 0.110 0.890 31 H 0.101 0.899 32 H 0.143 0.857 33 H 0.143 0.857 34 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.120 -1.365 19.977 20.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.163 3.837 3 H 0.066 0.934 4 C -0.573 4.573 5 H 0.079 0.921 6 C -0.136 4.136 7 N -0.521 5.521 8 Si 0.729 3.271 9 H -0.201 1.201 10 H -0.211 1.211 11 H -0.202 1.202 12 N -0.354 5.354 13 C 0.289 3.711 14 O -0.425 6.425 15 C -0.159 4.159 16 C -0.046 4.046 17 C 0.094 3.906 18 F -0.107 7.107 19 C -0.144 4.144 20 C -0.114 4.114 21 C -0.102 4.102 22 C 0.008 3.992 23 C -0.065 4.065 24 N -0.075 5.075 25 H 0.109 0.891 26 H 0.046 0.954 27 H 0.034 0.966 28 H 0.075 0.925 29 H 0.222 0.778 30 H 0.128 0.872 31 H 0.119 0.881 32 H 0.161 0.839 33 H 0.160 0.840 34 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 3.180 -0.626 18.759 19.037 hybrid contribution -0.214 -1.001 -0.771 1.282 sum 2.966 -1.627 17.988 18.303 Atomic orbital electron populations 1.22068 0.98325 0.99157 1.00927 1.18760 0.91096 0.93954 0.79840 0.93401 1.21174 1.32544 1.13267 0.90336 0.92137 1.24882 0.94778 0.94945 0.99040 1.69894 1.35770 1.22429 1.23994 0.86502 0.79195 0.79591 0.81784 1.20126 1.21084 1.20174 1.46507 1.64846 1.13535 1.10487 1.20026 0.79147 0.87581 0.84357 1.90681 1.51161 1.15676 1.84959 1.20823 1.04647 0.98191 0.92265 1.19377 0.91933 0.97733 0.95524 1.17202 0.82591 0.94433 0.96403 1.91532 1.48799 1.76163 1.94226 1.21336 1.00049 0.95893 0.97104 1.20888 0.91751 0.99077 0.99699 1.21176 0.99649 0.96231 0.93103 1.15586 0.88632 0.99839 0.95144 1.25468 0.93041 0.94403 0.93545 1.81305 1.11110 1.07122 1.07946 0.89125 0.95422 0.96617 0.92507 0.77839 0.87159 0.88057 0.83944 0.83960 0.84290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.70 9.26 37.16 0.34 -3.35 16 2 C 0.26 6.89 2.56 -69.08 -0.18 6.72 16 3 H 0.05 1.44 7.57 -51.93 -0.39 1.05 16 4 C -0.53 -14.46 8.73 -34.44 -0.30 -14.76 16 5 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 6 C 0.07 1.83 5.30 -17.82 -0.09 1.74 16 7 N -0.88 -25.26 11.32 55.43 0.63 -24.64 16 8 Si 0.90 21.01 29.54 -169.99 -5.02 15.99 16 9 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 10 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 12 N -0.71 -15.01 5.07 -54.93 -0.28 -15.29 16 13 C 0.51 10.16 7.79 -10.98 -0.09 10.07 16 14 O -0.55 -13.05 15.69 5.56 0.09 -12.96 16 15 C -0.12 -1.72 5.25 -29.04 -0.15 -1.87 16 16 C -0.04 -0.56 4.41 -104.14 -0.46 -1.02 16 17 C 0.11 1.40 7.23 -39.48 -0.29 1.11 16 18 F -0.13 -1.74 16.47 2.25 0.04 -1.71 16 19 C -0.12 -1.13 10.02 -39.43 -0.39 -1.52 16 20 C -0.10 -0.72 10.03 -39.65 -0.40 -1.12 16 21 C -0.08 -0.73 9.75 -39.16 -0.38 -1.11 16 22 C 0.01 0.14 5.73 -106.94 -0.61 -0.47 16 23 C 0.25 3.68 13.80 -22.45 -0.31 3.37 16 24 N -0.40 -6.73 18.54 41.86 0.78 -5.95 16 25 H 0.09 2.48 6.07 -51.93 -0.32 2.17 16 26 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 27 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 29 H 0.39 7.11 8.54 -40.82 -0.35 6.76 16 30 H 0.11 1.33 7.64 -51.93 -0.40 0.93 16 31 H 0.10 1.33 7.08 -51.93 -0.37 0.96 16 32 H 0.14 0.93 8.06 -52.49 -0.42 0.51 16 33 H 0.14 0.58 8.06 -52.48 -0.42 0.16 16 34 H 0.14 0.92 8.06 -52.49 -0.42 0.49 16 LS Contribution 311.23 15.07 4.69 4.69 Total: -1.00 -33.12 311.23 -5.87 -38.98 By element: Atomic # 1 Polarization: 6.59 SS G_CDS: -3.48 Total: 3.12 kcal Atomic # 6 Polarization: 1.07 SS G_CDS: -3.31 Total: -2.24 kcal Atomic # 7 Polarization: -47.01 SS G_CDS: 1.13 Total: -45.88 kcal Atomic # 8 Polarization: -13.05 SS G_CDS: 0.09 Total: -12.96 kcal Atomic # 9 Polarization: -1.74 SS G_CDS: 0.04 Total: -1.71 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -33.12 -5.87 -38.98 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352113776.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.064 kcal (2) G-P(sol) polarization free energy of solvation -33.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds