Wall clock time and date at job start Mon Mar 30 2020 01:28:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.46983 * 2 1 4 4 C 1.50700 * 109.47433 * 239.99767 * 2 1 3 5 5 H 1.07995 * 120.00109 * 240.00043 * 4 2 1 6 6 C 1.37873 * 119.99681 * 60.00380 * 4 2 1 7 7 N 1.31521 * 120.00364 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99840 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47183 * 60.00003 * 8 6 4 10 10 H 1.48496 * 109.47283 * 179.97438 * 8 6 4 11 11 H 1.48501 * 109.47136 * 299.99823 * 8 6 4 12 12 N 1.46506 * 109.46691 * 119.99739 * 2 1 3 13 13 C 1.34773 * 119.99969 * 274.72265 * 12 2 1 14 14 O 1.21281 * 120.00220 * 0.02562 * 13 12 2 15 15 C 1.50706 * 120.00080 * 180.02562 * 13 12 2 16 16 C 1.50690 * 109.47185 * 180.02562 * 15 13 12 17 17 C 1.38208 * 120.09145 * 90.00243 * 16 15 13 18 18 F 1.35096 * 119.94902 * 359.97438 * 17 16 15 19 19 C 1.38553 * 120.09788 * 179.97438 * 17 16 15 20 20 C 1.38343 * 120.28235 * 0.02562 * 19 17 16 21 21 C 1.37935 * 120.18276 * 0.02562 * 20 19 17 22 22 C 1.39585 * 120.09082 * 269.72673 * 16 15 13 23 23 C 1.43196 * 120.13535 * 359.97438 * 22 16 15 24 24 N 5.63478 * 141.25229 * 78.94275 * 2 1 3 25 25 H 1.09002 * 109.46832 * 60.00240 * 1 2 3 26 26 H 1.09001 * 109.47659 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47574 * 300.00469 * 1 2 3 28 28 H 0.96994 * 119.99652 * 180.02562 * 7 6 4 29 29 H 0.97005 * 119.99811 * 95.00317 * 12 2 1 30 30 H 1.09004 * 109.46762 * 300.00389 * 15 13 12 31 31 H 1.08998 * 109.46924 * 59.99727 * 15 13 12 32 32 H 1.07996 * 119.85787 * 180.02562 * 19 17 16 33 33 H 1.08005 * 119.91422 * 180.02562 * 20 19 17 34 34 H 1.07995 * 120.05671 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6994 -0.2394 -2.4826 7 7 0.9429 0.8297 -2.6034 8 14 2.3215 -1.1204 -4.0078 9 1 1.8259 -2.5203 -4.0077 10 1 1.8262 -0.4207 -5.2204 11 1 3.8065 -1.1210 -4.0080 12 7 2.0182 -0.6906 1.1963 13 6 2.1522 -0.0169 2.3558 14 8 1.8681 1.1610 2.4091 15 6 2.6550 -0.7271 3.5862 16 6 2.7114 0.2427 4.7382 17 6 1.6139 0.4039 5.5627 18 9 0.4889 -0.3086 5.3351 19 6 1.6658 1.2952 6.6223 20 6 2.8142 2.0287 6.8612 21 6 3.9159 1.8778 6.0451 22 6 3.8741 0.9765 4.9790 23 6 5.0174 0.8101 4.1330 24 7 5.9246 0.6764 3.4613 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 0.7083 1.1608 -3.4844 29 1 2.2489 -1.6318 1.1527 30 1 1.9800 -1.5464 3.8341 31 1 3.6523 -1.1232 3.3951 32 1 0.8061 1.4178 7.2643 33 1 2.8482 2.7215 7.6891 34 1 4.8114 2.4511 6.2338 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352113776.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:37 Heat of formation + Delta-G solvation = -55.498516 kcal Electronic energy + Delta-G solvation = -20519.321560 eV Core-core repulsion = 17137.721884 eV Total energy + Delta-G solvation = -3381.599675 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 276.101 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.92862 -41.09899 -39.89949 -37.52458 -36.77972 -34.43067 -34.02049 -31.98366 -31.09726 -28.64644 -27.36893 -25.09194 -23.77469 -22.51353 -21.23920 -20.16056 -18.99729 -17.97673 -17.67520 -17.34832 -17.04431 -16.70692 -16.54433 -16.03541 -15.80708 -15.07948 -14.83041 -14.73921 -14.63178 -14.38316 -14.15236 -13.82406 -13.69289 -13.35774 -13.06191 -12.93789 -12.87164 -12.75798 -12.57241 -12.29902 -12.25170 -12.16595 -11.16449 -10.91166 -10.62327 -9.98117 -9.81600 -9.70895 -8.21051 -6.39027 -0.37971 0.10928 1.41538 1.43914 1.47829 1.51688 1.71331 1.81221 2.30565 2.49265 2.63051 2.87419 3.09033 3.31393 3.42308 3.71601 3.97593 4.00007 4.25102 4.36757 4.41838 4.58589 4.71909 4.89004 4.93359 5.05491 5.09493 5.21245 5.25921 5.38873 5.55765 5.64283 5.78509 5.85835 6.06000 6.31940 6.67818 6.87443 7.27686 7.47122 8.85094 Molecular weight = 276.10amu Principal moments of inertia in cm(-1) A = 0.025761 B = 0.004487 C = 0.004087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.641027 B = 6238.078559 C = 6849.101479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.271 3.729 3 H -0.005 1.005 4 C -0.551 4.551 5 H 0.071 0.929 6 C 0.016 3.984 7 N -0.916 5.916 8 Si 0.972 3.028 9 H -0.262 1.262 10 H -0.283 1.283 11 H -0.274 1.274 12 N -0.707 5.707 13 C 0.500 3.500 14 O -0.587 6.587 15 C -0.106 4.106 16 C -0.067 4.067 17 C 0.089 3.911 18 F -0.142 7.142 19 C -0.113 4.113 20 C -0.078 4.078 21 C -0.070 4.070 22 C -0.013 4.013 23 C 0.270 3.730 24 N -0.452 5.452 25 H 0.067 0.933 26 H 0.041 0.959 27 H 0.013 0.987 28 H 0.266 0.734 29 H 0.405 0.595 30 H 0.135 0.865 31 H 0.112 0.888 32 H 0.172 0.828 33 H 0.190 0.810 34 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.341 -1.820 22.039 22.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.168 3.832 3 H 0.013 0.987 4 C -0.589 4.589 5 H 0.089 0.911 6 C -0.185 4.185 7 N -0.554 5.554 8 Si 0.797 3.203 9 H -0.187 1.187 10 H -0.209 1.209 11 H -0.199 1.199 12 N -0.356 5.356 13 C 0.287 3.713 14 O -0.469 6.469 15 C -0.146 4.146 16 C -0.071 4.071 17 C 0.070 3.930 18 F -0.121 7.121 19 C -0.132 4.132 20 C -0.095 4.095 21 C -0.090 4.090 22 C -0.017 4.017 23 C -0.044 4.044 24 N -0.128 5.128 25 H 0.086 0.914 26 H 0.060 0.940 27 H 0.032 0.968 28 H 0.075 0.925 29 H 0.240 0.760 30 H 0.153 0.847 31 H 0.130 0.870 32 H 0.190 0.810 33 H 0.207 0.793 34 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 3.413 -1.120 20.850 21.157 hybrid contribution -0.318 -0.756 -1.274 1.515 sum 3.095 -1.876 19.577 19.908 Atomic orbital electron populations 1.21870 0.97978 0.99539 0.99608 1.18341 0.91319 0.91723 0.81812 0.98663 1.21508 1.32799 1.13649 0.90931 0.91098 1.25799 0.94800 0.95576 1.02293 1.70044 1.36808 1.23845 1.24733 0.85398 0.78483 0.78856 0.77608 1.18657 1.20866 1.19908 1.46298 1.65163 1.14241 1.09861 1.20971 0.77803 0.87252 0.85316 1.90644 1.52712 1.17753 1.85749 1.20722 1.05326 0.98668 0.89868 1.19362 0.93137 0.98724 0.95873 1.17537 0.81970 0.95736 0.97781 1.91495 1.49361 1.76706 1.94503 1.21792 1.01601 0.94046 0.95779 1.21441 0.90022 0.98269 0.99778 1.21614 1.01308 0.94605 0.91487 1.15800 0.87686 1.01686 0.96517 1.25910 0.92801 0.92959 0.92737 1.81307 1.12857 1.09024 1.09593 0.91447 0.93983 0.96830 0.92455 0.76008 0.84741 0.86982 0.81016 0.79316 0.81559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.82 9.26 71.98 0.67 -6.16 16 2 C 0.27 14.60 2.56 44.24 0.11 14.71 16 3 H 0.00 -0.29 7.57 -2.39 -0.02 -0.31 16 4 C -0.55 -30.16 8.73 25.60 0.22 -29.94 16 5 H 0.07 3.64 7.74 -2.91 -0.02 3.62 16 6 C 0.02 0.86 5.30 84.65 0.45 1.31 16 7 N -0.92 -53.67 11.32 21.45 0.24 -53.42 16 8 Si 0.97 43.09 29.54 68.60 2.03 45.12 16 9 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 10 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 11 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 12 N -0.71 -30.63 5.07 -446.09 -2.26 -32.90 16 13 C 0.50 20.52 7.79 87.66 0.68 21.21 16 14 O -0.59 -29.06 15.69 -3.03 -0.05 -29.10 16 15 C -0.11 -3.04 5.25 29.10 0.15 -2.89 16 16 C -0.07 -1.75 4.41 -19.55 -0.09 -1.84 16 17 C 0.09 2.06 7.23 22.34 0.16 2.22 16 18 F -0.14 -3.71 16.47 44.97 0.74 -2.97 16 19 C -0.11 -1.64 10.02 22.37 0.22 -1.42 16 20 C -0.08 -0.80 10.03 22.22 0.22 -0.58 16 21 C -0.07 -1.04 9.75 22.54 0.22 -0.82 16 22 C -0.01 -0.32 5.73 -21.37 -0.12 -0.44 16 23 C 0.27 7.92 13.80 88.32 1.22 9.14 16 24 N -0.45 -15.52 18.54 19.01 0.35 -15.17 16 25 H 0.07 3.82 6.07 -2.39 -0.01 3.81 16 26 H 0.04 2.00 8.14 -2.39 -0.02 1.98 16 27 H 0.01 0.65 8.14 -2.39 -0.02 0.64 16 28 H 0.27 14.75 8.31 -92.71 -0.77 13.97 16 29 H 0.41 14.78 8.54 -92.70 -0.79 13.99 16 30 H 0.13 3.12 7.64 -2.39 -0.02 3.10 16 31 H 0.11 2.92 7.08 -2.39 -0.02 2.91 16 32 H 0.17 1.46 8.06 -2.91 -0.02 1.44 16 33 H 0.19 0.28 8.06 -2.91 -0.02 0.25 16 34 H 0.17 1.53 8.06 -2.91 -0.02 1.50 16 Total: -1.00 -75.75 311.23 5.54 -70.21 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: 0.36 Total: 13.72 kcal Atomic # 6 Polarization: 0.39 SS G_CDS: 4.13 Total: 4.51 kcal Atomic # 7 Polarization: -99.82 SS G_CDS: -1.67 Total: -101.48 kcal Atomic # 8 Polarization: -29.06 SS G_CDS: -0.05 Total: -29.10 kcal Atomic # 9 Polarization: -3.71 SS G_CDS: 0.74 Total: -2.97 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.12 kcal Total: -75.75 5.54 -70.21 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352113776.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.709 kcal (2) G-P(sol) polarization free energy of solvation -75.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds