Wall clock time and date at job start Mon Mar 30 2020 01:43:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86805 * 120.00066 * 2 1 4 4 H 1.48501 * 109.46849 * 269.99747 * 3 2 1 5 5 H 1.48497 * 109.46856 * 29.99681 * 3 2 1 6 6 H 1.48493 * 109.47093 * 149.99571 * 3 2 1 7 7 C 1.37879 * 120.00119 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99945 * 0.02562 * 7 2 1 9 9 C 1.50697 * 120.00262 * 179.97438 * 7 2 1 10 10 O 1.42896 * 109.47111 * 179.97438 * 9 7 2 11 11 C 1.42906 * 114.00096 * 180.02562 * 10 9 7 12 12 C 1.52989 * 109.47178 * 180.02562 * 11 10 9 13 13 S 1.81407 * 109.47134 * 180.02562 * 12 11 10 14 14 O 1.42099 * 108.57458 * 65.50914 * 13 12 11 15 15 O 1.42097 * 108.57510 * 294.48465 * 13 12 11 16 16 C 1.81399 * 101.92202 * 179.97438 * 13 12 11 17 17 C 1.52997 * 109.47065 * 59.99830 * 16 13 12 18 18 C 1.52999 * 109.47317 * 179.97438 * 17 16 13 19 19 C 1.53005 * 109.47159 * 300.00546 * 18 17 16 20 20 C 1.52997 * 109.47452 * 59.99536 * 19 18 17 21 21 C 1.53000 * 109.46958 * 179.97438 * 16 13 12 22 22 H 0.97001 * 119.99984 * 0.02562 * 1 2 3 23 23 H 1.09004 * 109.46821 * 60.00329 * 9 7 2 24 24 H 1.08999 * 109.47336 * 300.00557 * 9 7 2 25 25 H 1.08996 * 109.46762 * 59.99823 * 11 10 9 26 26 H 1.09007 * 109.46578 * 300.00496 * 11 10 9 27 27 H 1.08996 * 109.47970 * 59.99887 * 12 11 10 28 28 H 1.09007 * 109.47220 * 299.99427 * 12 11 10 29 29 H 1.09002 * 109.47098 * 299.99842 * 16 13 12 30 30 H 1.08996 * 109.47853 * 300.00017 * 17 16 13 31 31 H 1.09002 * 109.47153 * 60.00046 * 17 16 13 32 32 H 1.09000 * 109.47486 * 180.02562 * 18 17 16 33 33 H 1.09002 * 109.46716 * 60.00091 * 18 17 16 34 34 H 1.09002 * 109.46935 * 299.99411 * 19 18 17 35 35 H 1.09001 * 109.46812 * 179.97438 * 19 18 17 36 36 H 1.08993 * 109.47194 * 179.97438 * 20 19 18 37 37 H 1.09002 * 109.46695 * 59.99734 * 20 19 18 38 38 H 1.08992 * 109.47399 * 300.00030 * 21 16 13 39 39 H 1.09004 * 109.46724 * 60.00516 * 21 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0000 10 8 3.9878 -2.5413 0.0013 11 6 5.4124 -2.6542 0.0014 12 6 5.8068 -4.1324 0.0022 13 16 7.6152 -4.2757 0.0032 14 8 8.1099 -3.7543 1.2290 15 8 8.1111 -3.7555 -1.2226 16 6 7.8485 -6.0746 0.0048 17 6 7.1995 -6.6742 -1.2442 18 6 7.3968 -8.1914 -1.2431 19 6 8.8931 -8.5111 -1.2424 20 6 9.5422 -7.9115 0.0066 21 6 9.3447 -6.3948 0.0052 22 1 -0.4850 0.8401 -0.0004 23 1 3.8751 -0.6797 0.8895 24 1 3.8745 -0.6808 -0.8904 25 1 5.8150 -2.1698 0.8909 26 1 5.8151 -2.1714 -0.8890 27 1 5.4041 -4.6165 -0.8874 28 1 5.4040 -4.6155 0.8925 29 1 7.3853 -6.5003 0.8950 30 1 6.1336 -6.4462 -1.2449 31 1 7.6627 -6.2486 -2.1343 32 1 6.9348 -8.6186 -2.1332 33 1 6.9338 -8.6174 -0.3530 34 1 9.3560 -8.0852 -2.1326 35 1 9.0336 -9.5920 -1.2412 36 1 10.6079 -8.1397 0.0073 37 1 9.0791 -8.3375 0.8967 38 1 9.8075 -5.9692 -0.8851 39 1 9.8074 -5.9676 0.8949 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385209221.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:46 Heat of formation + Delta-G solvation = -141.194804 kcal Electronic energy + Delta-G solvation = -19682.539536 eV Core-core repulsion = 16523.835296 eV Total energy + Delta-G solvation = -3158.704240 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 276.123 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -38.78677 -37.20895 -37.07456 -36.11836 -32.90537 -31.85740 -31.46617 -31.00084 -27.85607 -23.94639 -23.29416 -22.54198 -21.93845 -20.33682 -18.92135 -17.41170 -16.87843 -16.40288 -16.30745 -15.59318 -15.15886 -15.11611 -14.67928 -14.52792 -14.52572 -13.81214 -13.31172 -13.25257 -13.04574 -12.67327 -12.50386 -12.17332 -12.10120 -12.06408 -11.62991 -11.59346 -11.50663 -11.27251 -11.09185 -10.94438 -10.79823 -10.75916 -10.61362 -10.12642 -9.90106 -9.27440 -8.99479 -8.57315 -6.16765 -4.16966 -0.19501 2.59161 3.23139 3.30133 3.32098 3.38122 3.76608 4.04961 4.20272 4.31840 4.39180 4.46197 4.63688 4.70810 4.84733 4.87307 4.97581 5.05840 5.08646 5.10399 5.14625 5.36827 5.41770 5.49796 5.53096 5.66511 5.68965 5.72206 5.74949 5.77509 5.85024 5.97436 6.50981 6.90626 7.50894 7.84988 8.55597 8.92509 9.41551 10.95950 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.038206 B = 0.003515 C = 0.003331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.698552 B = 7964.195375 C = 8403.282902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.074 3.926 3 Si 0.875 3.125 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.265 1.265 7 C -0.523 4.523 8 H 0.083 0.917 9 C 0.164 3.836 10 O -0.372 6.372 11 C 0.071 3.929 12 C -0.609 4.609 13 S 2.416 3.584 14 O -0.938 6.938 15 O -0.934 6.934 16 C -0.566 4.566 17 C -0.114 4.114 18 C -0.112 4.112 19 C -0.124 4.124 20 C -0.111 4.111 21 C -0.107 4.107 22 H 0.268 0.732 23 H 0.008 0.992 24 H 0.004 0.996 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.140 0.860 28 H 0.139 0.861 29 H 0.139 0.861 30 H 0.081 0.919 31 H 0.086 0.914 32 H 0.070 0.930 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.069 0.931 37 H 0.066 0.934 38 H 0.080 0.920 39 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.401 -16.922 -1.202 25.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.128 4.128 3 Si 0.701 3.299 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.189 1.189 7 C -0.561 4.561 8 H 0.101 0.899 9 C 0.089 3.911 10 O -0.291 6.291 11 C -0.008 4.008 12 C -0.737 4.737 13 S 2.600 3.400 14 O -0.935 6.935 15 O -0.931 6.931 16 C -0.676 4.676 17 C -0.152 4.152 18 C -0.151 4.151 19 C -0.162 4.162 20 C -0.149 4.149 21 C -0.146 4.146 22 H 0.078 0.922 23 H 0.026 0.974 24 H 0.021 0.979 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.158 0.842 28 H 0.157 0.843 29 H 0.157 0.843 30 H 0.100 0.900 31 H 0.104 0.896 32 H 0.089 0.911 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.099 0.901 39 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 19.729 -16.249 -1.189 25.587 hybrid contribution -0.212 0.473 0.102 0.528 sum 19.518 -15.776 -1.087 25.120 Atomic orbital electron populations 1.69864 1.06070 1.27250 1.49959 1.24756 0.94833 0.98812 0.94445 0.86860 0.80437 0.83627 0.78958 1.19747 1.20620 1.18944 1.20842 0.87980 0.95453 1.51811 0.89875 1.20731 0.96439 0.79021 0.94929 1.87945 1.15851 1.30131 1.95154 1.21835 0.87289 0.90660 1.00975 1.30408 1.24376 1.06342 1.12622 1.08204 0.78201 0.78160 0.75479 1.93582 1.77783 1.76489 1.45610 1.93572 1.77611 1.76471 1.45453 1.30173 1.05377 1.24277 1.07744 1.21515 1.00872 0.97722 0.95101 1.21462 0.96586 0.94475 1.02546 1.21590 0.95676 1.00573 0.98319 1.21448 1.00926 0.93818 0.98731 1.21362 0.90621 0.98817 1.03767 0.92233 0.97422 0.97855 0.92619 0.92571 0.84153 0.84275 0.84337 0.90034 0.89576 0.91139 0.91500 0.91589 0.91675 0.91259 0.91493 0.90122 0.90180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.46 13.96 55.43 0.77 -26.69 16 2 C 0.07 2.17 5.47 -17.82 -0.10 2.07 16 3 Si 0.87 21.41 27.47 -169.99 -4.67 16.74 16 4 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.26 -6.22 6.54 56.52 0.37 -5.85 16 7 C -0.52 -15.57 9.99 -34.44 -0.34 -15.91 16 8 H 0.08 2.68 8.06 -52.49 -0.42 2.26 16 9 C 0.16 4.21 4.76 36.00 0.17 4.38 16 10 O -0.37 -8.64 10.33 -35.23 -0.36 -9.00 16 11 C 0.07 1.27 5.95 37.15 0.22 1.49 16 12 C -0.61 -7.74 5.72 37.15 0.21 -7.53 16 13 S 2.42 28.52 4.24 -107.50 -0.46 28.06 16 14 O -0.94 -13.98 18.10 -57.83 -1.05 -15.03 16 15 O -0.93 -13.62 17.91 -57.83 -1.04 -14.66 16 16 C -0.57 -4.52 2.58 -26.73 -0.07 -4.59 16 17 C -0.11 -0.84 4.95 -26.73 -0.13 -0.97 16 18 C -0.11 -0.71 5.92 -26.73 -0.16 -0.87 16 19 C -0.12 -0.75 5.92 -26.73 -0.16 -0.90 16 20 C -0.11 -0.69 5.92 -26.76 -0.16 -0.85 16 21 C -0.11 -0.83 5.21 -26.75 -0.14 -0.97 16 22 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 23 H 0.01 0.20 7.20 -51.93 -0.37 -0.17 16 24 H 0.00 0.09 7.57 -51.93 -0.39 -0.30 16 25 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 26 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 27 H 0.14 1.51 6.87 -51.93 -0.36 1.16 16 28 H 0.14 1.50 8.14 -51.92 -0.42 1.08 16 29 H 0.14 0.82 8.14 -51.92 -0.42 0.39 16 30 H 0.08 0.52 6.56 -51.93 -0.34 0.18 16 31 H 0.09 0.65 8.06 -51.93 -0.42 0.24 16 32 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 37 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 LS Contribution 325.47 15.07 4.90 4.90 Total: -1.00 -36.21 325.47 -9.09 -45.30 By element: Atomic # 1 Polarization: 1.56 SS G_CDS: -6.55 Total: -4.98 kcal Atomic # 6 Polarization: -23.99 SS G_CDS: -0.65 Total: -24.64 kcal Atomic # 7 Polarization: -27.46 SS G_CDS: 0.77 Total: -26.69 kcal Atomic # 8 Polarization: -36.24 SS G_CDS: -2.45 Total: -38.69 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -4.67 Total: 16.74 kcal Atomic # 16 Polarization: 28.52 SS G_CDS: -0.46 Total: 28.06 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -36.21 -9.09 -45.30 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385209221.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.897 kcal (2) G-P(sol) polarization free energy of solvation -36.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds