Wall clock time and date at job start Mon Mar 30 2020 01:43:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86805 * 120.00066 * 2 1 4 4 H 1.48501 * 109.46849 * 269.99747 * 3 2 1 5 5 H 1.48497 * 109.46856 * 29.99681 * 3 2 1 6 6 H 1.48493 * 109.47093 * 149.99571 * 3 2 1 7 7 C 1.37879 * 120.00119 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99945 * 0.02562 * 7 2 1 9 9 C 1.50697 * 120.00262 * 179.97438 * 7 2 1 10 10 O 1.42896 * 109.47111 * 179.97438 * 9 7 2 11 11 C 1.42906 * 114.00096 * 180.02562 * 10 9 7 12 12 C 1.52989 * 109.47178 * 180.02562 * 11 10 9 13 13 S 1.81407 * 109.47134 * 180.02562 * 12 11 10 14 14 O 1.42099 * 108.57458 * 65.50914 * 13 12 11 15 15 O 1.42097 * 108.57510 * 294.48465 * 13 12 11 16 16 C 1.81399 * 101.92202 * 179.97438 * 13 12 11 17 17 C 1.52997 * 109.47065 * 59.99830 * 16 13 12 18 18 C 1.52999 * 109.47317 * 179.97438 * 17 16 13 19 19 C 1.53005 * 109.47159 * 300.00546 * 18 17 16 20 20 C 1.52997 * 109.47452 * 59.99536 * 19 18 17 21 21 C 1.53000 * 109.46958 * 179.97438 * 16 13 12 22 22 H 0.97001 * 119.99984 * 0.02562 * 1 2 3 23 23 H 1.09004 * 109.46821 * 60.00329 * 9 7 2 24 24 H 1.08999 * 109.47336 * 300.00557 * 9 7 2 25 25 H 1.08996 * 109.46762 * 59.99823 * 11 10 9 26 26 H 1.09007 * 109.46578 * 300.00496 * 11 10 9 27 27 H 1.08996 * 109.47970 * 59.99887 * 12 11 10 28 28 H 1.09007 * 109.47220 * 299.99427 * 12 11 10 29 29 H 1.09002 * 109.47098 * 299.99842 * 16 13 12 30 30 H 1.08996 * 109.47853 * 300.00017 * 17 16 13 31 31 H 1.09002 * 109.47153 * 60.00046 * 17 16 13 32 32 H 1.09000 * 109.47486 * 180.02562 * 18 17 16 33 33 H 1.09002 * 109.46716 * 60.00091 * 18 17 16 34 34 H 1.09002 * 109.46935 * 299.99411 * 19 18 17 35 35 H 1.09001 * 109.46812 * 179.97438 * 19 18 17 36 36 H 1.08993 * 109.47194 * 179.97438 * 20 19 18 37 37 H 1.09002 * 109.46695 * 59.99734 * 20 19 18 38 38 H 1.08992 * 109.47399 * 300.00030 * 21 16 13 39 39 H 1.09004 * 109.46724 * 60.00516 * 21 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0000 10 8 3.9878 -2.5413 0.0013 11 6 5.4124 -2.6542 0.0014 12 6 5.8068 -4.1324 0.0022 13 16 7.6152 -4.2757 0.0032 14 8 8.1099 -3.7543 1.2290 15 8 8.1111 -3.7555 -1.2226 16 6 7.8485 -6.0746 0.0048 17 6 7.1995 -6.6742 -1.2442 18 6 7.3968 -8.1914 -1.2431 19 6 8.8931 -8.5111 -1.2424 20 6 9.5422 -7.9115 0.0066 21 6 9.3447 -6.3948 0.0052 22 1 -0.4850 0.8401 -0.0004 23 1 3.8751 -0.6797 0.8895 24 1 3.8745 -0.6808 -0.8904 25 1 5.8150 -2.1698 0.8909 26 1 5.8151 -2.1714 -0.8890 27 1 5.4041 -4.6165 -0.8874 28 1 5.4040 -4.6155 0.8925 29 1 7.3853 -6.5003 0.8950 30 1 6.1336 -6.4462 -1.2449 31 1 7.6627 -6.2486 -2.1343 32 1 6.9348 -8.6186 -2.1332 33 1 6.9338 -8.6174 -0.3530 34 1 9.3560 -8.0852 -2.1326 35 1 9.0336 -9.5920 -1.2412 36 1 10.6079 -8.1397 0.0073 37 1 9.0791 -8.3375 0.8967 38 1 9.8075 -5.9692 -0.8851 39 1 9.8074 -5.9676 0.8949 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385209221.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:43:46 Heat of formation + Delta-G solvation = -167.997768 kcal Electronic energy + Delta-G solvation = -19683.701800 eV Core-core repulsion = 16523.835296 eV Total energy + Delta-G solvation = -3159.866504 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 276.123 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.34008 -38.92609 -38.11122 -37.16468 -35.02316 -33.09005 -32.09041 -31.69938 -29.89134 -24.97830 -24.09098 -23.86413 -23.34036 -20.86531 -19.87119 -19.16205 -18.32820 -17.56449 -17.45161 -16.69640 -16.63173 -16.41630 -16.00887 -15.22234 -15.06874 -15.04424 -14.71632 -14.56065 -14.28626 -13.63269 -13.30379 -13.23911 -13.15818 -13.14031 -13.03207 -12.77555 -12.58540 -12.50126 -12.14377 -12.11020 -11.97446 -11.85060 -11.45650 -11.41522 -11.14333 -10.98969 -10.80735 -10.54915 -8.41884 -6.50730 -1.12796 1.31848 1.33960 1.44914 1.68920 2.25853 2.38657 2.90519 2.93359 3.05420 3.43360 3.50196 3.65827 3.75793 3.92224 4.15026 4.16739 4.22068 4.34195 4.41536 4.45057 4.45768 4.55053 4.57714 4.75886 4.89059 4.89327 4.97978 5.00533 5.18985 5.22224 5.30601 5.33496 5.35130 5.52390 5.82232 6.50258 6.58346 7.13341 8.74786 Molecular weight = 276.12amu Principal moments of inertia in cm(-1) A = 0.038206 B = 0.003515 C = 0.003331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.698552 B = 7964.195375 C = 8403.282902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C 0.017 3.983 3 Si 0.950 3.050 4 H -0.258 1.258 5 H -0.270 1.270 6 H -0.247 1.247 7 C -0.550 4.550 8 H 0.036 0.964 9 C 0.169 3.831 10 O -0.393 6.393 11 C 0.051 3.949 12 C -0.611 4.611 13 S 2.419 3.581 14 O -0.974 6.974 15 O -0.968 6.968 16 C -0.535 4.535 17 C -0.124 4.124 18 C -0.112 4.112 19 C -0.127 4.127 20 C -0.109 4.109 21 C -0.119 4.119 22 H 0.275 0.725 23 H 0.017 0.983 24 H 0.016 0.984 25 H 0.061 0.939 26 H 0.062 0.938 27 H 0.159 0.841 28 H 0.159 0.841 29 H 0.168 0.832 30 H 0.093 0.907 31 H 0.081 0.919 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.062 0.938 35 H 0.076 0.924 36 H 0.079 0.921 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.118 -17.657 -1.096 27.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.182 4.182 3 Si 0.771 3.229 4 H -0.182 1.182 5 H -0.195 1.195 6 H -0.171 1.171 7 C -0.587 4.587 8 H 0.054 0.946 9 C 0.094 3.906 10 O -0.313 6.313 11 C -0.027 4.027 12 C -0.738 4.738 13 S 2.607 3.393 14 O -0.971 6.971 15 O -0.965 6.965 16 C -0.649 4.649 17 C -0.163 4.163 18 C -0.151 4.151 19 C -0.165 4.165 20 C -0.147 4.147 21 C -0.157 4.157 22 H 0.084 0.916 23 H 0.034 0.966 24 H 0.034 0.966 25 H 0.079 0.921 26 H 0.080 0.920 27 H 0.177 0.823 28 H 0.177 0.823 29 H 0.186 0.814 30 H 0.111 0.889 31 H 0.099 0.901 32 H 0.096 0.904 33 H 0.094 0.906 34 H 0.080 0.920 35 H 0.095 0.905 36 H 0.097 0.903 37 H 0.094 0.906 38 H 0.095 0.905 39 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 21.444 -16.952 -1.083 27.357 hybrid contribution -0.746 0.522 0.052 0.912 sum 20.699 -16.430 -1.031 26.447 Atomic orbital electron populations 1.70006 1.08126 1.28934 1.50608 1.25790 0.95811 1.03268 0.93308 0.85683 0.79493 0.77730 0.79985 1.18198 1.19478 1.17095 1.21104 0.90498 0.94172 1.52943 0.94590 1.20496 0.93826 0.80653 0.95665 1.87888 1.19353 1.28695 1.95325 1.22215 0.84288 0.94560 1.01602 1.30466 1.25575 1.03161 1.14628 1.08025 0.77097 0.80232 0.73968 1.93531 1.78062 1.78802 1.46684 1.93522 1.77836 1.78734 1.46445 1.29948 1.06333 1.18872 1.09730 1.21690 1.01521 0.98717 0.94342 1.21502 0.96939 0.93249 1.03406 1.21634 0.95446 1.01312 0.98063 1.21476 1.01819 0.92181 0.99251 1.21538 0.90071 1.00306 1.03823 0.91604 0.96578 0.96609 0.92127 0.91958 0.82324 0.82320 0.81401 0.88864 0.90079 0.90447 0.90556 0.91970 0.90492 0.90271 0.90563 0.90532 0.89988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.78 13.96 21.45 0.30 -58.48 16 2 C 0.02 1.00 5.47 84.66 0.46 1.47 16 3 Si 0.95 43.55 27.47 68.60 1.88 45.43 16 4 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 5 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 6 H -0.25 -10.58 6.54 99.48 0.65 -9.93 16 7 C -0.55 -33.59 9.99 25.60 0.26 -33.34 16 8 H 0.04 2.45 8.06 -2.91 -0.02 2.42 16 9 C 0.17 8.66 4.76 71.23 0.34 9.00 16 10 O -0.39 -18.34 10.33 -148.98 -1.54 -19.88 16 11 C 0.05 1.80 5.95 71.98 0.43 2.23 16 12 C -0.61 -14.77 5.72 71.98 0.41 -14.35 16 13 S 2.42 54.75 4.24 -56.49 -0.24 54.51 16 14 O -0.97 -28.55 18.10 -127.37 -2.30 -30.86 16 15 O -0.97 -28.03 17.91 -127.37 -2.28 -30.31 16 16 C -0.54 -7.25 2.58 30.59 0.08 -7.17 16 17 C -0.12 -1.52 4.95 30.59 0.15 -1.37 16 18 C -0.11 -1.07 5.92 30.60 0.18 -0.89 16 19 C -0.13 -1.17 5.92 30.60 0.18 -0.99 16 20 C -0.11 -1.03 5.92 30.58 0.18 -0.85 16 21 C -0.12 -1.59 5.21 30.58 0.16 -1.43 16 22 H 0.27 15.76 8.31 -92.71 -0.77 14.99 16 23 H 0.02 0.80 7.20 -2.38 -0.02 0.79 16 24 H 0.02 0.78 7.57 -2.39 -0.02 0.76 16 25 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 26 H 0.06 2.08 8.14 -2.38 -0.02 2.06 16 27 H 0.16 3.17 6.87 -2.39 -0.02 3.15 16 28 H 0.16 3.14 8.14 -2.39 -0.02 3.12 16 29 H 0.17 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.09 0.93 6.56 -2.39 -0.02 0.91 16 31 H 0.08 1.10 8.06 -2.39 -0.02 1.08 16 32 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 34 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 35 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 36 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 37 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 38 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 Total: -1.00 -80.07 325.47 -0.40 -80.47 By element: Atomic # 1 Polarization: 5.85 SS G_CDS: 0.95 Total: 6.80 kcal Atomic # 6 Polarization: -50.53 SS G_CDS: 2.83 Total: -47.69 kcal Atomic # 7 Polarization: -58.78 SS G_CDS: 0.30 Total: -58.48 kcal Atomic # 8 Polarization: -74.92 SS G_CDS: -6.12 Total: -81.05 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 1.88 Total: 45.43 kcal Atomic # 16 Polarization: 54.75 SS G_CDS: -0.24 Total: 54.51 kcal Total: -80.07 -0.40 -80.47 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385209221.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.526 kcal (2) G-P(sol) polarization free energy of solvation -80.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds