Wall clock time and date at job start Mon Mar 30 2020 01:31:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36038 * 126.34710 * 2 1 4 4 C 1.50698 * 124.95255 * 0.02562 * 3 2 1 5 5 C 1.53002 * 109.46580 * 90.00702 * 4 3 2 6 6 S 1.81401 * 109.46881 * 180.02562 * 5 4 3 7 7 C 1.81407 * 103.00021 * 179.97438 * 6 5 4 8 8 C 1.50702 * 109.47112 * 180.02562 * 7 6 5 9 9 H 1.07999 * 119.99587 * 359.97438 * 8 7 6 10 10 C 1.37875 * 119.99984 * 179.97438 * 8 7 6 11 11 N 1.31516 * 119.99887 * 0.02562 * 10 8 7 12 12 Si 1.86796 * 119.99996 * 179.97438 * 10 8 7 13 13 H 1.48505 * 109.46836 * 60.00593 * 12 10 8 14 14 H 1.48500 * 109.47245 * 180.02562 * 12 10 8 15 15 H 1.48496 * 109.47505 * 300.00270 * 12 10 8 16 16 N 1.30112 * 110.09816 * 180.02562 * 3 2 1 17 17 C 1.35784 * 109.64625 * 359.97438 * 16 3 2 18 18 C 1.39735 * 133.60201 * 180.02562 * 17 16 3 19 19 C 1.36605 * 119.88505 * 180.02562 * 18 17 16 20 20 C 1.38766 * 120.67061 * 359.97438 * 19 18 17 21 21 C 1.37853 * 120.45492 * 359.97438 * 20 19 18 22 22 C 1.38055 * 126.34910 * 180.02562 * 2 1 3 23 23 H 1.09000 * 109.47055 * 269.98439 * 1 2 3 24 24 H 1.08996 * 109.47011 * 29.98960 * 1 2 3 25 25 H 1.08998 * 109.47096 * 149.98785 * 1 2 3 26 26 H 1.08995 * 109.47321 * 210.00373 * 4 3 2 27 27 H 1.08991 * 109.46949 * 330.01132 * 4 3 2 28 28 H 1.09000 * 109.47461 * 300.00019 * 5 4 3 29 29 H 1.08996 * 109.47563 * 60.00376 * 5 4 3 30 30 H 1.09006 * 109.46528 * 299.99812 * 7 6 5 31 31 H 1.08997 * 109.47065 * 59.99594 * 7 6 5 32 32 H 0.96995 * 119.99976 * 180.02562 * 11 10 8 33 33 H 1.08000 * 120.05641 * 359.97438 * 18 17 16 34 34 H 1.07999 * 119.66329 * 179.72373 * 19 18 17 35 35 H 1.08007 * 119.77548 * 179.97438 * 20 19 18 36 36 H 1.07997 * 120.15999 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2712 1.0957 0.0000 4 6 1.7881 2.5231 0.0006 5 6 1.6253 3.0058 1.4433 6 16 1.0429 4.7238 1.4441 7 6 0.9123 5.1096 3.2118 8 6 0.4310 6.5275 3.3823 9 1 0.2248 7.1358 2.5140 10 6 0.2540 7.0481 4.6466 11 7 0.5056 6.3074 5.7039 12 14 -0.3418 8.8058 4.8579 13 1 -1.6733 8.9574 4.2179 14 1 -0.4489 9.1217 6.3050 15 1 0.6234 9.7360 4.2189 16 7 3.5204 0.7316 -0.0005 17 6 3.6008 -0.6238 -0.0004 18 6 4.6680 -1.5258 -0.0003 19 6 4.4233 -2.8698 -0.0006 20 6 3.1223 -3.3524 -0.0005 21 6 2.0539 -2.4812 0.0005 22 6 2.2832 -1.1119 -0.0005 23 1 -0.3633 -0.0003 1.0277 24 1 -0.3633 0.8901 -0.5137 25 1 -0.3633 -0.8899 -0.5140 26 1 2.5143 3.1528 -0.5134 27 1 0.8284 2.5820 -0.5127 28 1 0.8990 2.3761 1.9574 29 1 2.5850 2.9469 1.9567 30 1 0.2039 4.4269 3.6812 31 1 1.8897 4.9983 3.6812 32 1 0.3807 6.6736 6.5934 33 1 5.6846 -1.1611 -0.0008 34 1 5.2509 -3.5637 -0.0051 35 1 2.9454 -4.4179 -0.0012 36 1 1.0433 -2.8620 0.0010 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413016872.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:31 Heat of formation + Delta-G solvation = 57.321315 kcal Electronic energy + Delta-G solvation = -17751.457128 eV Core-core repulsion = 14940.962863 eV Total energy + Delta-G solvation = -2810.494264 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 276.099 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.26709 -37.64467 -34.34525 -33.48521 -33.16303 -30.60783 -28.89455 -28.54777 -27.10455 -24.73383 -22.98452 -22.26475 -21.74893 -20.02105 -17.50606 -17.12808 -16.58865 -16.08653 -15.62885 -15.18552 -14.65621 -14.54218 -14.20650 -14.04852 -13.62265 -13.47677 -12.99298 -12.72643 -12.35702 -12.31178 -12.11613 -12.03220 -11.60326 -11.50233 -11.19855 -10.84896 -10.72293 -10.47461 -10.02474 -9.95109 -9.60773 -8.93687 -8.62913 -8.40708 -8.18291 -6.75781 -6.21067 -4.25768 0.82767 1.39839 2.33753 2.55547 2.77892 3.27118 3.30448 3.34433 3.77293 3.79849 4.10334 4.33618 4.38288 4.50898 4.83864 4.86090 4.91052 5.01142 5.14915 5.16015 5.21380 5.28113 5.30557 5.40973 5.60437 5.62665 5.88518 6.00467 6.11306 6.32181 6.37188 6.43012 6.76430 7.01158 7.05889 7.09274 7.72921 7.85646 7.98426 8.75848 9.37447 10.90243 Molecular weight = 276.10amu Principal moments of inertia in cm(-1) A = 0.038330 B = 0.002994 C = 0.002965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.316069 B = 9348.780498 C = 9441.025642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.490 5.490 3 C 0.298 3.702 4 C -0.024 4.024 5 C -0.085 4.085 6 S -0.300 6.300 7 C 0.094 3.906 8 C -0.514 4.514 9 H 0.067 0.933 10 C 0.065 3.935 11 N -0.893 5.893 12 Si 0.907 3.093 13 H -0.274 1.274 14 H -0.285 1.285 15 H -0.273 1.273 16 N -0.491 5.491 17 C 0.048 3.952 18 C -0.064 4.064 19 C -0.132 4.132 20 C -0.108 4.108 21 C -0.109 4.109 22 C 0.043 3.957 23 H 0.078 0.922 24 H 0.092 0.908 25 H 0.083 0.917 26 H 0.109 0.891 27 H 0.091 0.909 28 H 0.070 0.930 29 H 0.081 0.919 30 H 0.035 0.965 31 H 0.037 0.963 32 H 0.266 0.734 33 H 0.128 0.872 34 H 0.127 0.873 35 H 0.127 0.873 36 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.691 -18.538 -11.921 22.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.180 5.180 3 C 0.032 3.968 4 C -0.064 4.064 5 C -0.234 4.234 6 S -0.074 6.074 7 C -0.053 4.053 8 C -0.553 4.553 9 H 0.086 0.914 10 C -0.139 4.139 11 N -0.531 5.531 12 Si 0.734 3.266 13 H -0.199 1.199 14 H -0.211 1.211 15 H -0.198 1.198 16 N -0.210 5.210 17 C -0.071 4.071 18 C -0.084 4.084 19 C -0.152 4.152 20 C -0.128 4.128 21 C -0.130 4.130 22 C -0.066 4.066 23 H 0.096 0.904 24 H 0.111 0.889 25 H 0.102 0.898 26 H 0.127 0.873 27 H 0.109 0.891 28 H 0.089 0.911 29 H 0.100 0.900 30 H 0.053 0.947 31 H 0.055 0.945 32 H 0.076 0.924 33 H 0.146 0.854 34 H 0.145 0.855 35 H 0.145 0.855 36 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 2.021 -17.358 -12.585 21.535 hybrid contribution -0.842 -0.495 1.402 1.709 sum 1.179 -17.852 -11.183 21.099 Atomic orbital electron populations 1.22034 0.76030 1.04655 1.03943 1.45212 1.07263 1.05039 1.60507 1.23682 0.85236 0.90647 0.97268 1.19961 1.02961 0.85877 0.97578 1.23111 1.04258 0.98516 0.97548 1.86549 1.87880 1.11743 1.21178 1.21049 1.00206 1.00483 0.83565 1.20636 1.45976 0.95958 0.92730 0.91445 1.24970 0.95071 0.98499 0.95325 1.69945 1.48024 1.36890 0.98263 0.86398 0.79485 0.83623 0.77070 1.19897 1.21057 1.19843 1.70475 1.17288 1.10627 1.22635 1.19130 0.92245 0.90337 1.05365 1.20031 0.97457 0.91558 0.99344 1.20612 0.96960 0.94772 1.02862 1.20837 0.92013 0.99091 1.00820 1.19923 0.99601 0.88774 1.04706 1.18912 0.91359 0.89381 1.06997 0.90375 0.88923 0.89848 0.87283 0.89066 0.91110 0.90001 0.94670 0.94505 0.92404 0.85403 0.85500 0.85471 0.86240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.64 10.96 59.84 0.66 1.30 16 2 N -0.49 -6.19 3.21 -118.51 -0.38 -6.57 16 3 C 0.30 4.35 7.11 -154.82 -1.10 3.25 16 4 C -0.02 -0.33 5.51 -27.88 -0.15 -0.48 16 5 C -0.08 -1.42 5.92 37.16 0.22 -1.20 16 6 S -0.30 -6.31 21.66 -107.50 -2.33 -8.64 16 7 C 0.09 2.43 5.70 36.01 0.21 2.63 16 8 C -0.51 -14.41 9.13 -34.44 -0.31 -14.72 16 9 H 0.07 1.88 7.71 -52.49 -0.40 1.47 16 10 C 0.07 1.83 5.46 -17.82 -0.10 1.73 16 11 N -0.89 -26.01 13.29 55.43 0.74 -25.27 16 12 Si 0.91 21.27 29.54 -169.99 -5.02 16.25 16 13 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 14 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 15 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 16 N -0.49 -8.11 11.27 -8.23 -0.09 -8.21 16 17 C 0.05 0.72 7.23 -84.70 -0.61 0.11 16 18 C -0.06 -0.79 10.05 -39.61 -0.40 -1.18 16 19 C -0.13 -1.27 9.96 -39.98 -0.40 -1.67 16 20 C -0.11 -0.99 10.03 -39.53 -0.40 -1.38 16 21 C -0.11 -1.14 10.05 -39.50 -0.40 -1.54 16 22 C 0.04 0.56 6.88 -83.98 -0.58 -0.01 16 23 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.09 0.68 7.00 -51.93 -0.36 0.32 16 25 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.11 1.52 8.14 -51.93 -0.42 1.09 16 27 H 0.09 1.07 7.01 -51.93 -0.36 0.70 16 28 H 0.07 1.15 8.14 -51.92 -0.42 0.72 16 29 H 0.08 1.47 8.14 -51.93 -0.42 1.04 16 30 H 0.04 0.94 8.14 -51.92 -0.42 0.52 16 31 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 33 H 0.13 1.39 8.06 -52.49 -0.42 0.97 16 34 H 0.13 0.87 8.06 -52.49 -0.42 0.44 16 35 H 0.13 0.79 8.06 -52.48 -0.42 0.37 16 36 H 0.12 0.96 8.06 -52.49 -0.42 0.53 16 LS Contribution 323.52 15.07 4.88 4.88 Total: -1.00 -32.17 323.52 -10.49 -42.66 By element: Atomic # 1 Polarization: 3.00 SS G_CDS: -4.92 Total: -1.91 kcal Atomic # 6 Polarization: -9.82 SS G_CDS: -3.36 Total: -13.18 kcal Atomic # 7 Polarization: -40.31 SS G_CDS: 0.26 Total: -40.05 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Atomic # 16 Polarization: -6.31 SS G_CDS: -2.33 Total: -8.64 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -32.17 -10.49 -42.66 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413016872.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.979 kcal (2) G-P(sol) polarization free energy of solvation -32.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.658 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds