Wall clock time and date at job start Mon Mar 30 2020 01:31:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36038 * 126.34710 * 2 1 4 4 C 1.50698 * 124.95255 * 0.02562 * 3 2 1 5 5 C 1.53002 * 109.46580 * 90.00702 * 4 3 2 6 6 S 1.81401 * 109.46881 * 180.02562 * 5 4 3 7 7 C 1.81407 * 103.00021 * 179.97438 * 6 5 4 8 8 C 1.50702 * 109.47112 * 180.02562 * 7 6 5 9 9 H 1.07999 * 119.99587 * 359.97438 * 8 7 6 10 10 C 1.37875 * 119.99984 * 179.97438 * 8 7 6 11 11 N 1.31516 * 119.99887 * 0.02562 * 10 8 7 12 12 Si 1.86796 * 119.99996 * 179.97438 * 10 8 7 13 13 H 1.48505 * 109.46836 * 60.00593 * 12 10 8 14 14 H 1.48500 * 109.47245 * 180.02562 * 12 10 8 15 15 H 1.48496 * 109.47505 * 300.00270 * 12 10 8 16 16 N 1.30112 * 110.09816 * 180.02562 * 3 2 1 17 17 C 1.35784 * 109.64625 * 359.97438 * 16 3 2 18 18 C 1.39735 * 133.60201 * 180.02562 * 17 16 3 19 19 C 1.36605 * 119.88505 * 180.02562 * 18 17 16 20 20 C 1.38766 * 120.67061 * 359.97438 * 19 18 17 21 21 C 1.37853 * 120.45492 * 359.97438 * 20 19 18 22 22 C 1.38055 * 126.34910 * 180.02562 * 2 1 3 23 23 H 1.09000 * 109.47055 * 269.98439 * 1 2 3 24 24 H 1.08996 * 109.47011 * 29.98960 * 1 2 3 25 25 H 1.08998 * 109.47096 * 149.98785 * 1 2 3 26 26 H 1.08995 * 109.47321 * 210.00373 * 4 3 2 27 27 H 1.08991 * 109.46949 * 330.01132 * 4 3 2 28 28 H 1.09000 * 109.47461 * 300.00019 * 5 4 3 29 29 H 1.08996 * 109.47563 * 60.00376 * 5 4 3 30 30 H 1.09006 * 109.46528 * 299.99812 * 7 6 5 31 31 H 1.08997 * 109.47065 * 59.99594 * 7 6 5 32 32 H 0.96995 * 119.99976 * 180.02562 * 11 10 8 33 33 H 1.08000 * 120.05641 * 359.97438 * 18 17 16 34 34 H 1.07999 * 119.66329 * 179.72373 * 19 18 17 35 35 H 1.08007 * 119.77548 * 179.97438 * 20 19 18 36 36 H 1.07997 * 120.15999 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2712 1.0957 0.0000 4 6 1.7881 2.5231 0.0006 5 6 1.6253 3.0058 1.4433 6 16 1.0429 4.7238 1.4441 7 6 0.9123 5.1096 3.2118 8 6 0.4310 6.5275 3.3823 9 1 0.2248 7.1358 2.5140 10 6 0.2540 7.0481 4.6466 11 7 0.5056 6.3074 5.7039 12 14 -0.3418 8.8058 4.8579 13 1 -1.6733 8.9574 4.2179 14 1 -0.4489 9.1217 6.3050 15 1 0.6234 9.7360 4.2189 16 7 3.5204 0.7316 -0.0005 17 6 3.6008 -0.6238 -0.0004 18 6 4.6680 -1.5258 -0.0003 19 6 4.4233 -2.8698 -0.0006 20 6 3.1223 -3.3524 -0.0005 21 6 2.0539 -2.4812 0.0005 22 6 2.2832 -1.1119 -0.0005 23 1 -0.3633 -0.0003 1.0277 24 1 -0.3633 0.8901 -0.5137 25 1 -0.3633 -0.8899 -0.5140 26 1 2.5143 3.1528 -0.5134 27 1 0.8284 2.5820 -0.5127 28 1 0.8990 2.3761 1.9574 29 1 2.5850 2.9469 1.9567 30 1 0.2039 4.4269 3.6812 31 1 1.8897 4.9983 3.6812 32 1 0.3807 6.6736 6.5934 33 1 5.6846 -1.1611 -0.0008 34 1 5.2509 -3.5637 -0.0051 35 1 2.9454 -4.4179 -0.0012 36 1 1.0433 -2.8620 0.0010 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413016872.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:31 Heat of formation + Delta-G solvation = 40.051449 kcal Electronic energy + Delta-G solvation = -17752.206005 eV Core-core repulsion = 14940.962863 eV Total energy + Delta-G solvation = -2811.243142 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 276.099 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -43.20417 -38.48226 -35.30886 -35.25077 -34.65384 -31.41010 -30.70992 -29.84185 -27.87654 -26.07729 -24.91214 -23.13890 -22.71129 -21.00196 -18.66457 -18.38558 -17.97665 -17.38879 -16.81724 -16.59990 -16.08207 -15.88769 -15.07905 -14.98793 -14.87006 -14.55035 -14.29860 -14.24425 -13.89088 -13.85137 -13.41514 -12.89688 -12.73999 -12.59340 -12.46492 -12.38938 -12.33095 -11.96256 -11.56328 -11.37031 -10.97496 -10.77929 -10.75241 -9.29915 -9.08161 -8.51395 -8.34391 -6.48291 -0.06203 0.55384 0.85064 1.40467 1.43799 1.52370 1.64198 1.72462 1.94187 2.36471 2.89893 3.00451 3.12157 3.47974 3.78379 3.84721 3.85205 4.08804 4.14078 4.26242 4.38691 4.44086 4.48463 4.55517 4.60728 4.74130 4.85468 4.89138 4.90794 4.92291 5.20187 5.45926 5.55656 5.56920 5.58698 5.86006 5.97244 6.11039 6.59538 6.85524 7.20238 8.77671 Molecular weight = 276.10amu Principal moments of inertia in cm(-1) A = 0.038330 B = 0.002994 C = 0.002965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.316069 B = 9348.780498 C = 9441.025642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.488 5.488 3 C 0.282 3.718 4 C -0.011 4.011 5 C -0.069 4.069 6 S -0.286 6.286 7 C 0.090 3.910 8 C -0.537 4.537 9 H 0.066 0.934 10 C 0.013 3.987 11 N -0.928 5.928 12 Si 0.978 3.022 13 H -0.263 1.263 14 H -0.278 1.278 15 H -0.266 1.266 16 N -0.530 5.530 17 C 0.005 3.995 18 C -0.089 4.089 19 C -0.123 4.123 20 C -0.099 4.099 21 C -0.114 4.114 22 C 0.028 3.972 23 H 0.080 0.920 24 H 0.104 0.896 25 H 0.108 0.892 26 H 0.105 0.895 27 H 0.116 0.884 28 H 0.078 0.922 29 H 0.065 0.935 30 H 0.016 0.984 31 H 0.010 0.990 32 H 0.270 0.730 33 H 0.128 0.872 34 H 0.159 0.841 35 H 0.165 0.835 36 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.627 -20.051 -12.947 23.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.177 5.177 3 C 0.015 3.985 4 C -0.051 4.051 5 C -0.219 4.219 6 S -0.059 6.059 7 C -0.057 4.057 8 C -0.576 4.576 9 H 0.084 0.916 10 C -0.188 4.188 11 N -0.566 5.566 12 Si 0.801 3.199 13 H -0.188 1.188 14 H -0.203 1.203 15 H -0.191 1.191 16 N -0.251 5.251 17 C -0.113 4.113 18 C -0.108 4.108 19 C -0.143 4.143 20 C -0.119 4.119 21 C -0.135 4.135 22 C -0.082 4.082 23 H 0.099 0.901 24 H 0.122 0.878 25 H 0.127 0.873 26 H 0.124 0.876 27 H 0.135 0.865 28 H 0.096 0.904 29 H 0.084 0.916 30 H 0.034 0.966 31 H 0.028 0.972 32 H 0.079 0.921 33 H 0.146 0.854 34 H 0.176 0.824 35 H 0.183 0.817 36 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 0.939 -18.877 -13.624 23.299 hybrid contribution -0.440 -0.239 1.679 1.752 sum 0.498 -19.116 -11.945 22.547 Atomic orbital electron populations 1.22354 0.73794 1.06577 1.04710 1.45373 1.08507 1.04281 1.59556 1.23529 0.85381 0.91091 0.98508 1.19813 1.04219 0.85782 0.95270 1.23089 1.03268 0.95570 0.99922 1.86247 1.88084 1.15237 1.16363 1.20755 0.97969 0.99725 0.87247 1.20977 1.46479 0.96952 0.93146 0.91570 1.25953 0.94823 1.03106 0.94872 1.70061 1.48748 1.38980 0.98837 0.85304 0.79302 0.77929 0.77391 1.18778 1.20252 1.19106 1.70356 1.18776 1.12199 1.23772 1.19600 0.94145 0.90139 1.07395 1.20298 0.97169 0.92632 1.00715 1.21036 0.98552 0.94042 1.00661 1.21359 0.91262 1.00846 0.98402 1.20352 1.01535 0.87580 1.04034 1.19306 0.90842 0.90599 1.07421 0.90105 0.87750 0.87325 0.87634 0.86537 0.90360 0.91610 0.96597 0.97218 0.92067 0.85372 0.82390 0.81704 0.83518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.99 10.96 127.77 1.40 2.39 16 2 N -0.49 -11.87 3.21 -528.84 -1.70 -13.57 16 3 C 0.28 8.27 7.11 137.92 0.98 9.25 16 4 C -0.01 -0.30 5.51 29.85 0.16 -0.14 16 5 C -0.07 -2.33 5.92 71.98 0.43 -1.91 16 6 S -0.29 -12.16 21.66 -56.49 -1.22 -13.38 16 7 C 0.09 4.86 5.70 71.24 0.41 5.27 16 8 C -0.54 -30.68 9.13 25.60 0.23 -30.44 16 9 H 0.07 3.71 7.71 -2.91 -0.02 3.69 16 10 C 0.01 0.74 5.46 84.65 0.46 1.20 16 11 N -0.93 -55.05 13.29 21.45 0.28 -54.77 16 12 Si 0.98 43.54 29.54 68.60 2.03 45.57 16 13 H -0.26 -11.21 7.11 99.48 0.71 -10.51 16 14 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 15 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 16 N -0.53 -18.15 11.27 -179.96 -2.03 -20.17 16 17 C 0.01 0.16 7.23 39.45 0.29 0.45 16 18 C -0.09 -2.15 10.05 22.25 0.22 -1.93 16 19 C -0.12 -2.08 9.96 22.01 0.22 -1.86 16 20 C -0.10 -1.47 10.03 22.30 0.22 -1.25 16 21 C -0.11 -2.08 10.05 22.32 0.22 -1.86 16 22 C 0.03 0.71 6.88 38.86 0.27 0.97 16 23 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 24 H 0.10 1.30 7.00 -2.39 -0.02 1.28 16 25 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 26 H 0.11 2.95 8.14 -2.39 -0.02 2.93 16 27 H 0.12 2.54 7.01 -2.39 -0.02 2.52 16 28 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 29 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 30 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.27 14.98 8.31 -92.71 -0.77 14.21 16 33 H 0.13 2.89 8.06 -2.91 -0.02 2.87 16 34 H 0.16 1.61 8.06 -2.91 -0.02 1.59 16 35 H 0.17 1.20 8.06 -2.91 -0.02 1.17 16 36 H 0.15 1.78 8.06 -2.91 -0.02 1.76 16 Total: -1.00 -72.03 323.52 3.94 -68.09 By element: Atomic # 1 Polarization: 7.01 SS G_CDS: 1.06 Total: 8.08 kcal Atomic # 6 Polarization: -25.36 SS G_CDS: 5.52 Total: -19.85 kcal Atomic # 7 Polarization: -85.07 SS G_CDS: -3.44 Total: -88.51 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.57 kcal Atomic # 16 Polarization: -12.16 SS G_CDS: -1.22 Total: -13.38 kcal Total: -72.03 3.94 -68.09 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413016872.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.138 kcal (2) G-P(sol) polarization free energy of solvation -72.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.087 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds