Wall clock time and date at job start Mon Mar 30 2020 01:27:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.46617 * 2 1 4 4 C 1.53002 * 109.47329 * 119.99807 * 2 1 3 5 5 C 1.50696 * 109.46919 * 185.00033 * 4 2 1 6 6 H 1.07999 * 120.00202 * 359.97438 * 5 4 2 7 7 C 1.37884 * 119.99746 * 180.02562 * 5 4 2 8 8 N 1.31514 * 119.99573 * 0.27650 * 7 5 4 9 9 Si 1.86800 * 119.99781 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.46758 * 89.99934 * 9 7 5 11 11 H 1.48499 * 109.47026 * 209.99782 * 9 7 5 12 12 H 1.48496 * 109.47474 * 329.99818 * 9 7 5 13 13 S 1.81405 * 109.47137 * 239.99947 * 2 1 3 14 14 C 1.81408 * 102.99712 * 64.99783 * 13 2 1 15 15 C 1.50697 * 109.46918 * 180.02562 * 14 13 2 16 16 N 1.30105 * 124.95300 * 90.02344 * 15 14 13 17 17 C 1.35789 * 109.64903 * 179.97438 * 16 15 14 18 18 C 1.39737 * 133.60937 * 179.97438 * 17 16 15 19 19 C 1.36596 * 119.88791 * 180.02562 * 18 17 16 20 20 C 1.38779 * 120.67457 * 359.97438 * 19 18 17 21 21 C 1.37857 * 120.44623 * 359.97438 * 20 19 18 22 22 C 1.38839 * 119.68554 * 0.04806 * 21 20 19 23 23 N 1.36040 * 124.94932 * 269.72069 * 15 14 13 24 24 H 0.97001 * 126.34799 * 0.02562 * 23 15 14 25 25 H 1.09005 * 109.47098 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47143 * 299.99750 * 1 2 3 27 27 H 1.09001 * 109.47337 * 60.00388 * 1 2 3 28 28 H 1.09000 * 109.46497 * 65.00298 * 4 2 1 29 29 H 1.08999 * 109.46623 * 305.00362 * 4 2 1 30 30 H 0.97001 * 120.00651 * 359.71956 * 8 7 5 31 31 H 1.09002 * 109.47405 * 299.99967 * 14 13 2 32 32 H 1.08999 * 109.47277 * 60.00104 * 14 13 2 33 33 H 1.08007 * 120.05674 * 0.02891 * 18 17 16 34 34 H 1.08001 * 119.66643 * 180.02562 * 19 18 17 35 35 H 1.07990 * 119.78118 * 180.02562 * 20 19 18 36 36 H 1.08001 * 120.15911 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5419 -0.6148 1.3126 6 1 4.0790 -0.0861 0.5391 7 6 4.2305 -1.1934 2.3578 8 7 3.5770 -1.8428 3.2963 9 14 6.0922 -1.0621 2.4360 10 1 6.4710 0.1601 3.1895 11 1 6.6444 -2.2577 3.1222 12 1 6.6414 -0.9844 1.0585 13 16 2.1347 -0.8552 -1.4812 14 6 1.5663 0.2153 -2.8309 15 6 1.9972 -0.3695 -4.1513 16 7 1.2988 -1.2096 -4.8578 17 6 1.9794 -1.5323 -5.9876 18 6 1.7049 -2.3696 -7.0722 19 6 2.6129 -2.4906 -8.0855 20 6 3.8097 -1.7889 -8.0513 21 6 4.1014 -0.9564 -6.9920 22 6 3.1907 -0.8212 -5.9527 23 7 3.1707 -0.0916 -4.7809 24 1 3.8652 0.5071 -4.4644 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.7517 -1.7715 1.2055 29 1 1.6054 -0.2617 2.1369 30 1 2.6102 -1.9112 3.2555 31 1 0.4791 0.2881 -2.8038 32 1 2.0000 1.2085 -2.7142 33 1 0.7764 -2.9200 -7.1093 34 1 2.3969 -3.1384 -8.9223 35 1 4.5170 -1.8951 -8.8604 36 1 5.0340 -0.4122 -6.9703 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413017839.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:43 Heat of formation + Delta-G solvation = 49.269498 kcal Electronic energy + Delta-G solvation = -17903.437272 eV Core-core repulsion = 15092.593855 eV Total energy + Delta-G solvation = -2810.843417 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 276.099 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.17653 -37.47760 -34.85615 -33.21788 -32.22799 -31.40093 -30.05339 -27.81865 -26.98228 -23.14261 -22.55158 -22.28209 -21.28755 -20.59618 -17.96140 -17.31044 -16.86361 -16.04842 -15.66901 -15.22015 -14.44949 -14.24644 -14.07790 -13.82866 -13.65515 -13.49853 -13.19765 -12.72172 -12.12454 -12.03082 -11.73068 -11.64603 -11.31752 -11.19282 -10.93780 -10.76085 -10.47227 -10.15677 -10.02193 -9.91450 -9.28876 -8.60709 -8.45478 -8.34636 -8.17675 -7.09126 -6.36830 -4.06355 0.76484 1.41292 1.89114 2.78763 2.97038 3.12634 3.42180 3.47432 3.62664 3.80186 3.98326 4.46844 4.53467 4.85113 4.91842 4.96216 5.21649 5.33022 5.38259 5.40173 5.41868 5.52732 5.60654 5.63524 5.84209 5.94204 6.19748 6.27764 6.38348 6.42647 6.45423 6.52007 6.76179 7.15731 7.22597 7.30719 7.83095 8.11936 8.45641 8.84963 9.63997 11.02932 Molecular weight = 276.10amu Principal moments of inertia in cm(-1) A = 0.021741 B = 0.004035 C = 0.003590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.582874 B = 6937.708405 C = 7797.367770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.040 4.040 3 H 0.077 0.923 4 C 0.026 3.974 5 C -0.596 4.596 6 H 0.057 0.943 7 C 0.016 3.984 8 N -0.913 5.913 9 Si 1.070 2.930 10 H -0.289 1.289 11 H -0.284 1.284 12 H -0.288 1.288 13 S -0.193 6.193 14 C -0.043 4.043 15 C 0.317 3.683 16 N -0.481 5.481 17 C 0.049 3.951 18 C -0.064 4.064 19 C -0.131 4.131 20 C -0.106 4.106 21 C -0.110 4.110 22 C 0.048 3.952 23 N -0.591 5.591 24 H 0.425 0.575 25 H 0.064 0.936 26 H 0.060 0.940 27 H 0.044 0.956 28 H 0.018 0.982 29 H 0.024 0.976 30 H 0.268 0.732 31 H 0.111 0.889 32 H 0.096 0.904 33 H 0.128 0.872 34 H 0.128 0.872 35 H 0.128 0.872 36 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.104 4.471 -20.200 20.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.169 4.169 3 H 0.095 0.905 4 C -0.012 4.012 5 C -0.634 4.634 6 H 0.075 0.925 7 C -0.188 4.188 8 N -0.550 5.550 9 Si 0.898 3.102 10 H -0.215 1.215 11 H -0.210 1.210 12 H -0.214 1.214 13 S 0.033 5.967 14 C -0.192 4.192 15 C 0.050 3.950 16 N -0.203 5.203 17 C -0.070 4.070 18 C -0.083 4.083 19 C -0.151 4.151 20 C -0.126 4.126 21 C -0.131 4.131 22 C -0.063 4.063 23 N -0.202 5.202 24 H 0.264 0.736 25 H 0.083 0.917 26 H 0.079 0.921 27 H 0.063 0.937 28 H 0.036 0.964 29 H 0.042 0.958 30 H 0.079 0.921 31 H 0.129 0.871 32 H 0.114 0.886 33 H 0.146 0.854 34 H 0.146 0.854 35 H 0.146 0.854 36 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -1.042 2.754 -19.190 19.415 hybrid contribution -0.857 2.232 -0.771 2.512 sum -1.899 4.986 -19.962 20.662 Atomic orbital electron populations 1.22151 0.95004 1.02583 1.00929 1.23317 0.96177 1.01453 0.95967 0.90474 1.19133 0.97566 0.95141 0.89335 1.22054 0.91209 1.38811 1.11363 0.92501 1.25808 1.06877 0.93408 0.92686 1.70761 1.10323 1.39544 1.34327 0.83527 0.74468 0.76568 0.75609 1.21533 1.21011 1.21405 1.87677 1.74513 1.36389 0.98087 1.21856 1.05454 1.01277 0.90624 1.22556 0.82975 0.94929 0.94591 1.70435 1.30527 1.14807 1.04481 1.19136 0.91958 1.00541 0.95354 1.20027 0.99990 0.97016 0.91313 1.20621 0.94330 1.01197 0.98996 1.20855 0.97366 0.96737 0.97621 1.19970 0.98358 1.01911 0.92849 1.18905 0.99098 0.98397 0.89878 1.43018 1.19235 1.39938 1.18053 0.73599 0.91692 0.92062 0.93682 0.96377 0.95778 0.92139 0.87099 0.88575 0.85361 0.85442 0.85368 0.85959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.38 9.10 37.16 0.34 -2.04 16 2 C -0.04 -0.79 2.77 -26.73 -0.07 -0.87 16 3 H 0.08 1.47 8.14 -51.92 -0.42 1.05 16 4 C 0.03 0.65 3.76 -27.88 -0.10 0.55 16 5 C -0.60 -16.48 8.53 -34.44 -0.29 -16.77 16 6 H 0.06 1.56 7.60 -52.49 -0.40 1.16 16 7 C 0.02 0.46 5.46 -17.82 -0.10 0.36 16 8 N -0.91 -27.81 13.65 55.43 0.76 -27.05 16 9 Si 1.07 25.40 29.90 -169.99 -5.08 20.32 16 10 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 12 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 13 S -0.19 -3.73 20.44 -107.50 -2.20 -5.93 16 14 C -0.04 -0.62 6.26 36.00 0.23 -0.39 16 15 C 0.32 4.84 7.34 -154.83 -1.14 3.70 16 16 N -0.48 -8.14 11.27 -8.24 -0.09 -8.24 16 17 C 0.05 0.75 7.23 -84.70 -0.61 0.14 16 18 C -0.06 -0.79 10.05 -39.61 -0.40 -1.19 16 19 C -0.13 -1.29 9.96 -39.97 -0.40 -1.69 16 20 C -0.11 -1.00 10.03 -39.52 -0.40 -1.40 16 21 C -0.11 -1.19 10.07 -39.50 -0.40 -1.59 16 22 C 0.05 0.65 7.30 -83.99 -0.61 0.04 16 23 N -0.59 -7.77 6.23 -8.00 -0.05 -7.82 16 24 H 0.42 4.36 8.96 -40.82 -0.37 3.99 16 25 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 26 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.04 0.61 6.92 -51.93 -0.36 0.26 16 28 H 0.02 0.48 8.00 -51.93 -0.42 0.07 16 29 H 0.02 0.62 8.01 -51.93 -0.42 0.20 16 30 H 0.27 8.10 7.22 -40.82 -0.29 7.81 16 31 H 0.11 1.50 7.14 -51.92 -0.37 1.13 16 32 H 0.10 1.15 8.14 -51.92 -0.42 0.73 16 33 H 0.13 1.41 8.06 -52.48 -0.42 0.98 16 34 H 0.13 0.89 8.06 -52.49 -0.42 0.46 16 35 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 36 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 LS Contribution 319.35 15.07 4.81 4.81 Total: -1.00 -33.09 319.35 -10.61 -43.70 By element: Atomic # 1 Polarization: 6.16 SS G_CDS: -4.80 Total: 1.36 kcal Atomic # 6 Polarization: -17.20 SS G_CDS: -3.96 Total: -21.15 kcal Atomic # 7 Polarization: -43.73 SS G_CDS: 0.61 Total: -43.11 kcal Atomic # 14 Polarization: 25.40 SS G_CDS: -5.08 Total: 20.32 kcal Atomic # 16 Polarization: -3.73 SS G_CDS: -2.20 Total: -5.93 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -33.09 -10.61 -43.70 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413017839.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.973 kcal (2) G-P(sol) polarization free energy of solvation -33.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.703 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds