Wall clock time and date at job start Mon Mar 30 2020 01:27:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.46617 * 2 1 4 4 C 1.53002 * 109.47329 * 119.99807 * 2 1 3 5 5 C 1.50696 * 109.46919 * 185.00033 * 4 2 1 6 6 H 1.07999 * 120.00202 * 359.97438 * 5 4 2 7 7 C 1.37884 * 119.99746 * 180.02562 * 5 4 2 8 8 N 1.31514 * 119.99573 * 0.27650 * 7 5 4 9 9 Si 1.86800 * 119.99781 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.46758 * 89.99934 * 9 7 5 11 11 H 1.48499 * 109.47026 * 209.99782 * 9 7 5 12 12 H 1.48496 * 109.47474 * 329.99818 * 9 7 5 13 13 S 1.81405 * 109.47137 * 239.99947 * 2 1 3 14 14 C 1.81408 * 102.99712 * 64.99783 * 13 2 1 15 15 C 1.50697 * 109.46918 * 180.02562 * 14 13 2 16 16 N 1.30105 * 124.95300 * 90.02344 * 15 14 13 17 17 C 1.35789 * 109.64903 * 179.97438 * 16 15 14 18 18 C 1.39737 * 133.60937 * 179.97438 * 17 16 15 19 19 C 1.36596 * 119.88791 * 180.02562 * 18 17 16 20 20 C 1.38779 * 120.67457 * 359.97438 * 19 18 17 21 21 C 1.37857 * 120.44623 * 359.97438 * 20 19 18 22 22 C 1.38839 * 119.68554 * 0.04806 * 21 20 19 23 23 N 1.36040 * 124.94932 * 269.72069 * 15 14 13 24 24 H 0.97001 * 126.34799 * 0.02562 * 23 15 14 25 25 H 1.09005 * 109.47098 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47143 * 299.99750 * 1 2 3 27 27 H 1.09001 * 109.47337 * 60.00388 * 1 2 3 28 28 H 1.09000 * 109.46497 * 65.00298 * 4 2 1 29 29 H 1.08999 * 109.46623 * 305.00362 * 4 2 1 30 30 H 0.97001 * 120.00651 * 359.71956 * 8 7 5 31 31 H 1.09002 * 109.47405 * 299.99967 * 14 13 2 32 32 H 1.08999 * 109.47277 * 60.00104 * 14 13 2 33 33 H 1.08007 * 120.05674 * 0.02891 * 18 17 16 34 34 H 1.08001 * 119.66643 * 180.02562 * 19 18 17 35 35 H 1.07990 * 119.78118 * 180.02562 * 20 19 18 36 36 H 1.08001 * 120.15911 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5419 -0.6148 1.3126 6 1 4.0790 -0.0861 0.5391 7 6 4.2305 -1.1934 2.3578 8 7 3.5770 -1.8428 3.2963 9 14 6.0922 -1.0621 2.4360 10 1 6.4710 0.1601 3.1895 11 1 6.6444 -2.2577 3.1222 12 1 6.6414 -0.9844 1.0585 13 16 2.1347 -0.8552 -1.4812 14 6 1.5663 0.2153 -2.8309 15 6 1.9972 -0.3695 -4.1513 16 7 1.2988 -1.2096 -4.8578 17 6 1.9794 -1.5323 -5.9876 18 6 1.7049 -2.3696 -7.0722 19 6 2.6129 -2.4906 -8.0855 20 6 3.8097 -1.7889 -8.0513 21 6 4.1014 -0.9564 -6.9920 22 6 3.1907 -0.8212 -5.9527 23 7 3.1707 -0.0916 -4.7809 24 1 3.8652 0.5071 -4.4644 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.7517 -1.7715 1.2055 29 1 1.6054 -0.2617 2.1369 30 1 2.6102 -1.9112 3.2555 31 1 0.4791 0.2881 -2.8038 32 1 2.0000 1.2085 -2.7142 33 1 0.7764 -2.9200 -7.1093 34 1 2.3969 -3.1384 -8.9223 35 1 4.5170 -1.8951 -8.8604 36 1 5.0340 -0.4122 -6.9703 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413017839.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:42 Heat of formation + Delta-G solvation = 29.993951 kcal Electronic energy + Delta-G solvation = -17904.273122 eV Core-core repulsion = 15092.593855 eV Total energy + Delta-G solvation = -2811.679268 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 276.099 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.16719 -38.34099 -36.71655 -34.22545 -34.12058 -32.50282 -30.93506 -29.19232 -28.44611 -25.14668 -23.47066 -23.27705 -22.65301 -21.90424 -19.05283 -18.83897 -18.22731 -17.42852 -16.80797 -16.32293 -15.71909 -15.54795 -15.39200 -15.30219 -14.97246 -14.89159 -14.36302 -14.13967 -13.40468 -13.17905 -13.04116 -12.87401 -12.76051 -12.57660 -12.49787 -12.20025 -11.98853 -11.82153 -11.64886 -11.06415 -10.84117 -10.64292 -10.48905 -9.36920 -9.14012 -8.69453 -8.56574 -6.33893 -0.23075 0.51778 0.66094 1.50830 1.60290 1.61938 1.77466 1.84062 1.95982 2.56737 2.88940 2.95801 3.19503 3.53423 3.90220 3.97087 4.06496 4.12607 4.17059 4.32045 4.41860 4.45690 4.46222 4.48934 4.78833 4.85618 4.88959 5.05796 5.11127 5.15626 5.32249 5.41555 5.53224 5.56566 5.94544 5.97839 6.21949 6.30731 6.58975 6.78785 7.44941 8.75755 Molecular weight = 276.10amu Principal moments of inertia in cm(-1) A = 0.021741 B = 0.004035 C = 0.003590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.582874 B = 6937.708405 C = 7797.367770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.029 4.029 3 H 0.085 0.915 4 C 0.029 3.971 5 C -0.599 4.599 6 H 0.058 0.942 7 C -0.040 4.040 8 N -0.943 5.943 9 Si 1.115 2.885 10 H -0.269 1.269 11 H -0.287 1.287 12 H -0.272 1.272 13 S -0.257 6.257 14 C -0.016 4.016 15 C 0.298 3.702 16 N -0.514 5.514 17 C 0.008 3.992 18 C -0.086 4.086 19 C -0.121 4.121 20 C -0.096 4.096 21 C -0.118 4.118 22 C 0.035 3.965 23 N -0.583 5.583 24 H 0.436 0.564 25 H 0.054 0.946 26 H 0.070 0.930 27 H 0.076 0.924 28 H -0.011 1.011 29 H 0.011 0.989 30 H 0.255 0.745 31 H 0.122 0.878 32 H 0.124 0.876 33 H 0.132 0.868 34 H 0.161 0.839 35 H 0.167 0.833 36 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.818 5.583 -22.979 23.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.157 4.157 3 H 0.103 0.897 4 C -0.009 4.009 5 C -0.637 4.637 6 H 0.076 0.924 7 C -0.237 4.237 8 N -0.581 5.581 9 Si 0.937 3.063 10 H -0.194 1.194 11 H -0.213 1.213 12 H -0.197 1.197 13 S -0.031 6.031 14 C -0.165 4.165 15 C 0.030 3.970 16 N -0.236 5.236 17 C -0.111 4.111 18 C -0.105 4.105 19 C -0.141 4.141 20 C -0.115 4.115 21 C -0.138 4.138 22 C -0.076 4.076 23 N -0.196 5.196 24 H 0.277 0.723 25 H 0.073 0.927 26 H 0.089 0.911 27 H 0.095 0.905 28 H 0.007 0.993 29 H 0.029 0.971 30 H 0.064 0.936 31 H 0.140 0.860 32 H 0.143 0.857 33 H 0.150 0.850 34 H 0.179 0.821 35 H 0.184 0.816 36 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 0.236 3.891 -21.971 22.314 hybrid contribution -1.269 1.842 -0.129 2.241 sum -1.034 5.733 -22.100 22.855 Atomic orbital electron populations 1.22079 0.92273 1.02593 1.02936 1.23084 0.98334 1.00609 0.93701 0.89688 1.18990 0.96355 0.93926 0.91662 1.22411 0.92799 1.37693 1.10794 0.92405 1.27289 1.11068 0.92845 0.92498 1.70889 1.09642 1.41782 1.35777 0.82952 0.69577 0.77125 0.76629 1.19444 1.21324 1.19687 1.87783 1.75714 1.38993 1.00627 1.21770 1.06076 1.00811 0.87815 1.22534 0.83911 0.95657 0.94902 1.70330 1.32025 1.15562 1.05685 1.19608 0.93083 1.02404 0.95965 1.20319 1.01187 0.97371 0.91668 1.21068 0.93657 1.00652 0.98761 1.21390 0.97512 0.94848 0.97757 1.20403 0.98797 1.02361 0.92282 1.19290 0.99338 0.98405 0.90579 1.42951 1.18895 1.39880 1.17877 0.72287 0.92713 0.91106 0.90543 0.99314 0.97146 0.93571 0.86004 0.85738 0.85040 0.82146 0.81573 0.83454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.39 9.10 71.98 0.66 -3.73 16 2 C -0.03 -1.12 2.77 30.59 0.08 -1.03 16 3 H 0.08 3.16 8.14 -2.39 -0.02 3.14 16 4 C 0.03 1.46 3.76 29.85 0.11 1.57 16 5 C -0.60 -33.59 8.53 25.60 0.22 -33.37 16 6 H 0.06 3.17 7.60 -2.91 -0.02 3.15 16 7 C -0.04 -2.33 5.46 84.66 0.46 -1.87 16 8 N -0.94 -58.99 13.65 21.45 0.29 -58.70 16 9 Si 1.12 51.02 29.90 68.60 2.05 53.07 16 10 H -0.27 -11.39 7.11 99.48 0.71 -10.69 16 11 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 12 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 13 S -0.26 -9.97 20.44 -56.49 -1.15 -11.13 16 14 C -0.02 -0.43 6.26 71.23 0.45 0.01 16 15 C 0.30 8.92 7.34 137.92 1.01 9.94 16 16 N -0.51 -17.50 11.27 -179.97 -2.03 -19.53 16 17 C 0.01 0.23 7.23 39.45 0.29 0.52 16 18 C -0.09 -2.05 10.05 22.25 0.22 -1.83 16 19 C -0.12 -2.03 9.96 22.02 0.22 -1.81 16 20 C -0.10 -1.43 10.03 22.31 0.22 -1.21 16 21 C -0.12 -2.21 10.07 22.32 0.22 -1.99 16 22 C 0.03 0.90 7.30 38.86 0.28 1.18 16 23 N -0.58 -14.76 6.23 -179.23 -1.12 -15.88 16 24 H 0.44 8.36 8.96 -92.71 -0.83 7.52 16 25 H 0.05 1.82 8.14 -2.38 -0.02 1.80 16 26 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 27 H 0.08 1.92 6.92 -2.39 -0.02 1.90 16 28 H -0.01 -0.65 8.00 -2.39 -0.02 -0.66 16 29 H 0.01 0.56 8.01 -2.39 -0.02 0.54 16 30 H 0.25 16.10 7.22 -92.71 -0.67 15.44 16 31 H 0.12 3.08 7.14 -2.39 -0.02 3.07 16 32 H 0.12 2.70 8.14 -2.39 -0.02 2.68 16 33 H 0.13 2.87 8.06 -2.91 -0.02 2.84 16 34 H 0.16 1.57 8.06 -2.91 -0.02 1.54 16 35 H 0.17 1.24 8.06 -2.92 -0.02 1.22 16 36 H 0.15 1.95 8.06 -2.91 -0.02 1.93 16 Total: -1.00 -74.56 319.35 2.85 -71.71 By element: Atomic # 1 Polarization: 13.73 SS G_CDS: 0.35 Total: 14.08 kcal Atomic # 6 Polarization: -38.07 SS G_CDS: 4.45 Total: -33.62 kcal Atomic # 7 Polarization: -91.25 SS G_CDS: -2.85 Total: -94.11 kcal Atomic # 14 Polarization: 51.02 SS G_CDS: 2.05 Total: 53.07 kcal Atomic # 16 Polarization: -9.97 SS G_CDS: -1.15 Total: -11.13 kcal Total: -74.56 2.85 -71.71 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413017839.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.702 kcal (2) G-P(sol) polarization free energy of solvation -74.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.708 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds