Wall clock time and date at job start Mon Mar 30 2020 01:27:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 5 5 C 1.50698 * 109.46984 * 175.00062 * 4 2 1 6 6 H 1.08008 * 120.00253 * 0.02562 * 5 4 2 7 7 C 1.37881 * 120.00032 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99811 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99974 * 180.02562 * 7 5 4 10 10 H 1.48492 * 109.47344 * 89.99767 * 9 7 5 11 11 H 1.48499 * 109.46707 * 209.99826 * 9 7 5 12 12 H 1.48500 * 109.47223 * 329.99502 * 9 7 5 13 13 S 1.81404 * 109.46960 * 119.99872 * 2 1 3 14 14 C 1.81401 * 102.99859 * 295.00271 * 13 2 1 15 15 C 1.50705 * 109.46841 * 179.97438 * 14 13 2 16 16 N 1.30112 * 124.94709 * 90.02496 * 15 14 13 17 17 C 1.35788 * 109.63974 * 179.97438 * 16 15 14 18 18 C 1.39746 * 133.60295 * 180.02562 * 17 16 15 19 19 C 1.36596 * 119.88251 * 179.97438 * 18 17 16 20 20 C 1.38780 * 120.67532 * 359.97438 * 19 18 17 21 21 C 1.37855 * 120.44794 * 359.97438 * 20 19 18 22 22 C 1.38828 * 119.68756 * 0.04281 * 21 20 19 23 23 N 1.36031 * 124.95036 * 269.71798 * 15 14 13 24 24 H 0.97000 * 126.35054 * 0.02562 * 23 15 14 25 25 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 26 26 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 27 27 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 28 28 H 1.08990 * 109.47170 * 295.00238 * 4 2 1 29 29 H 1.09001 * 109.46952 * 55.00315 * 4 2 1 30 30 H 0.96997 * 119.99784 * 180.02562 * 8 7 5 31 31 H 1.08995 * 109.47206 * 299.99675 * 14 13 2 32 32 H 1.08998 * 109.47109 * 60.00201 * 14 13 2 33 33 H 1.07992 * 120.05367 * 359.97365 * 18 17 16 34 34 H 1.08001 * 119.66102 * 179.97438 * 19 18 17 35 35 H 1.08006 * 119.77255 * 180.02562 * 20 19 18 36 36 H 1.07997 * 120.15442 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5419 -0.6150 -1.3126 6 1 4.0791 -0.0862 -0.5390 7 6 4.2305 -1.1928 -2.3582 8 7 3.5765 -1.8371 -3.2999 9 14 6.0922 -1.0615 -2.4364 10 1 6.7000 -2.2147 -1.7252 11 1 6.5296 -1.0687 -3.8555 12 1 6.5269 0.2032 -1.7908 13 16 2.1347 -0.8551 1.4812 14 6 1.5663 0.2153 2.8309 15 6 1.9972 -0.3696 4.1513 16 7 3.1216 -0.1073 4.7512 17 6 3.1895 -0.8005 5.9168 18 6 4.1480 -0.8913 6.9297 19 6 3.9227 -1.6968 8.0097 20 6 2.7484 -2.4290 8.1141 21 6 1.7885 -2.3543 7.1275 22 6 2.0001 -1.5411 6.0224 23 7 1.2647 -1.2440 4.8924 24 1 0.3888 -1.5950 4.6679 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.7517 -1.7715 -1.2055 29 1 1.6055 -0.2618 -2.1369 30 1 4.0609 -2.2439 -4.0352 31 1 2.0000 1.2084 2.7142 32 1 0.4791 0.2881 2.8037 33 1 5.0651 -0.3255 6.8588 34 1 4.6660 -1.7646 8.7902 35 1 2.5852 -3.0611 8.9745 36 1 0.8762 -2.9258 7.2138 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413017842.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:45 Heat of formation + Delta-G solvation = 53.652437 kcal Electronic energy + Delta-G solvation = -17871.197744 eV Core-core repulsion = 15060.544385 eV Total energy + Delta-G solvation = -2810.653359 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 276.099 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.15386 -37.45765 -34.58932 -33.19989 -32.12062 -31.37412 -30.03619 -27.90527 -27.22329 -23.32430 -22.53904 -22.23938 -21.21014 -20.35070 -17.93881 -17.29458 -16.33936 -16.01422 -15.63571 -15.15571 -14.53107 -14.42803 -14.15482 -14.03744 -13.62879 -13.33764 -12.86119 -12.43842 -12.06909 -11.95703 -11.83667 -11.62179 -11.58990 -10.97583 -10.82577 -10.70888 -10.51113 -10.35391 -9.97248 -9.50365 -9.28107 -9.07396 -8.43890 -8.34659 -8.14882 -7.01541 -5.99971 -4.00691 0.79074 1.42990 1.94803 2.79388 3.01479 3.19664 3.37511 3.43166 3.48174 3.82785 4.02429 4.48482 4.49917 4.86669 4.93316 4.97991 5.23968 5.35045 5.37942 5.38957 5.52204 5.58932 5.65511 5.66751 5.87957 5.96074 6.27243 6.29408 6.40385 6.45146 6.51747 6.65134 6.78442 7.23998 7.49710 7.59590 7.87382 7.98280 8.34866 9.04572 9.63371 11.11445 Molecular weight = 276.10amu Principal moments of inertia in cm(-1) A = 0.021598 B = 0.004034 C = 0.003577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.131800 B = 6939.590029 C = 7824.904868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.047 4.047 3 H 0.079 0.921 4 C 0.041 3.959 5 C -0.515 4.515 6 H 0.065 0.935 7 C 0.058 3.942 8 N -0.898 5.898 9 Si 0.892 3.108 10 H -0.280 1.280 11 H -0.288 1.288 12 H -0.272 1.272 13 S -0.197 6.197 14 C -0.042 4.042 15 C 0.317 3.683 16 N -0.478 5.478 17 C 0.050 3.950 18 C -0.063 4.063 19 C -0.131 4.131 20 C -0.106 4.106 21 C -0.111 4.111 22 C 0.047 3.953 23 N -0.593 5.593 24 H 0.423 0.577 25 H 0.040 0.960 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.026 0.974 29 H 0.035 0.965 30 H 0.260 0.740 31 H 0.113 0.887 32 H 0.094 0.906 33 H 0.129 0.871 34 H 0.128 0.872 35 H 0.128 0.872 36 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.147 1.198 19.962 21.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.176 4.176 3 H 0.097 0.903 4 C 0.002 3.998 5 C -0.553 4.553 6 H 0.083 0.917 7 C -0.143 4.143 8 N -0.538 5.538 9 Si 0.720 3.280 10 H -0.206 1.206 11 H -0.214 1.214 12 H -0.197 1.197 13 S 0.029 5.971 14 C -0.192 4.192 15 C 0.049 3.951 16 N -0.199 5.199 17 C -0.069 4.069 18 C -0.082 4.082 19 C -0.152 4.152 20 C -0.126 4.126 21 C -0.132 4.132 22 C -0.064 4.064 23 N -0.205 5.205 24 H 0.262 0.738 25 H 0.059 0.941 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.044 0.956 29 H 0.053 0.947 30 H 0.070 0.930 31 H 0.131 0.869 32 H 0.112 0.888 33 H 0.147 0.853 34 H 0.145 0.855 35 H 0.146 0.854 36 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -5.855 0.746 19.593 20.463 hybrid contribution -0.749 0.368 -0.149 0.848 sum -6.604 1.114 19.444 20.565 Atomic orbital electron populations 1.22141 0.95288 1.02264 1.00807 1.23505 0.95960 1.01892 0.96234 0.90293 1.19012 0.96630 0.95570 0.88549 1.21268 0.91480 1.34526 1.08073 0.91679 1.24982 0.98504 0.95221 0.95600 1.69955 1.35599 1.36050 1.12165 0.86571 0.85729 0.78750 0.76922 1.20601 1.21386 1.19687 1.87655 1.75919 1.35066 0.98418 1.21856 1.03430 1.03252 0.90615 1.22602 0.87835 0.90866 0.93747 1.70473 1.17568 1.25453 1.06394 1.19153 0.94728 0.98204 0.94825 1.20051 0.97810 0.98757 0.91617 1.20621 0.98030 0.98198 0.98348 1.20851 0.93638 0.99820 0.98284 1.19940 1.00773 0.99995 0.92495 1.18894 0.94422 1.02310 0.90728 1.42999 1.19583 1.39869 1.18005 0.73797 0.94089 0.91915 0.91896 0.95614 0.94749 0.93013 0.86916 0.88804 0.85307 0.85454 0.85411 0.86042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.24 9.10 37.16 0.34 -1.90 16 2 C -0.05 -0.92 2.77 -26.73 -0.07 -0.99 16 3 H 0.08 1.52 8.14 -51.92 -0.42 1.10 16 4 C 0.04 1.01 4.45 -27.88 -0.12 0.88 16 5 C -0.51 -14.36 8.53 -34.44 -0.29 -14.66 16 6 H 0.07 1.82 7.60 -52.48 -0.40 1.42 16 7 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 8 N -0.90 -26.83 13.29 55.43 0.74 -26.09 16 9 Si 0.89 22.18 29.54 -169.99 -5.02 17.16 16 10 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 11 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 12 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 13 S -0.20 -3.77 20.44 -107.50 -2.20 -5.97 16 14 C -0.04 -0.61 6.26 36.01 0.23 -0.38 16 15 C 0.32 4.82 7.34 -154.82 -1.14 3.68 16 16 N -0.48 -8.31 11.27 -8.23 -0.09 -8.40 16 17 C 0.05 0.77 7.23 -84.70 -0.61 0.16 16 18 C -0.06 -0.80 10.05 -39.61 -0.40 -1.20 16 19 C -0.13 -1.32 9.96 -39.97 -0.40 -1.72 16 20 C -0.11 -0.99 10.03 -39.52 -0.40 -1.39 16 21 C -0.11 -1.17 10.07 -39.50 -0.40 -1.57 16 22 C 0.05 0.63 7.30 -83.99 -0.61 0.02 16 23 N -0.59 -7.48 6.23 -8.00 -0.05 -7.53 16 24 H 0.42 3.92 8.96 -40.82 -0.37 3.56 16 25 H 0.04 0.51 6.92 -51.93 -0.36 0.15 16 26 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 27 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 28 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 31 H 0.11 1.59 8.14 -51.93 -0.42 1.17 16 32 H 0.09 1.05 7.14 -51.92 -0.37 0.68 16 33 H 0.13 1.48 8.06 -52.49 -0.42 1.06 16 34 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 35 H 0.13 0.82 8.06 -52.48 -0.42 0.39 16 36 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 LS Contribution 320.66 15.07 4.83 4.83 Total: -1.00 -32.92 320.66 -10.63 -43.55 By element: Atomic # 1 Polarization: 4.80 SS G_CDS: -4.86 Total: -0.06 kcal Atomic # 6 Polarization: -13.52 SS G_CDS: -3.98 Total: -17.50 kcal Atomic # 7 Polarization: -42.61 SS G_CDS: 0.59 Total: -42.02 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Atomic # 16 Polarization: -3.77 SS G_CDS: -2.20 Total: -5.97 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -32.92 -10.63 -43.55 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413017842.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.203 kcal (2) G-P(sol) polarization free energy of solvation -32.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.551 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds