Wall clock time and date at job start Mon Mar 30 2020 01:27:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 5 5 C 1.50698 * 109.46984 * 175.00062 * 4 2 1 6 6 H 1.08008 * 120.00253 * 0.02562 * 5 4 2 7 7 C 1.37881 * 120.00032 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99811 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99974 * 180.02562 * 7 5 4 10 10 H 1.48492 * 109.47344 * 89.99767 * 9 7 5 11 11 H 1.48499 * 109.46707 * 209.99826 * 9 7 5 12 12 H 1.48500 * 109.47223 * 329.99502 * 9 7 5 13 13 S 1.81404 * 109.46960 * 119.99872 * 2 1 3 14 14 C 1.81401 * 102.99859 * 295.00271 * 13 2 1 15 15 C 1.50705 * 109.46841 * 179.97438 * 14 13 2 16 16 N 1.30112 * 124.94709 * 90.02496 * 15 14 13 17 17 C 1.35788 * 109.63974 * 179.97438 * 16 15 14 18 18 C 1.39746 * 133.60295 * 180.02562 * 17 16 15 19 19 C 1.36596 * 119.88251 * 179.97438 * 18 17 16 20 20 C 1.38780 * 120.67532 * 359.97438 * 19 18 17 21 21 C 1.37855 * 120.44794 * 359.97438 * 20 19 18 22 22 C 1.38828 * 119.68756 * 0.04281 * 21 20 19 23 23 N 1.36031 * 124.95036 * 269.71798 * 15 14 13 24 24 H 0.97000 * 126.35054 * 0.02562 * 23 15 14 25 25 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 26 26 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 27 27 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 28 28 H 1.08990 * 109.47170 * 295.00238 * 4 2 1 29 29 H 1.09001 * 109.46952 * 55.00315 * 4 2 1 30 30 H 0.96997 * 119.99784 * 180.02562 * 8 7 5 31 31 H 1.08995 * 109.47206 * 299.99675 * 14 13 2 32 32 H 1.08998 * 109.47109 * 60.00201 * 14 13 2 33 33 H 1.07992 * 120.05367 * 359.97365 * 18 17 16 34 34 H 1.08001 * 119.66102 * 179.97438 * 19 18 17 35 35 H 1.08006 * 119.77255 * 180.02562 * 20 19 18 36 36 H 1.07997 * 120.15442 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5419 -0.6150 -1.3126 6 1 4.0791 -0.0862 -0.5390 7 6 4.2305 -1.1928 -2.3582 8 7 3.5765 -1.8371 -3.2999 9 14 6.0922 -1.0615 -2.4364 10 1 6.7000 -2.2147 -1.7252 11 1 6.5296 -1.0687 -3.8555 12 1 6.5269 0.2032 -1.7908 13 16 2.1347 -0.8551 1.4812 14 6 1.5663 0.2153 2.8309 15 6 1.9972 -0.3696 4.1513 16 7 3.1216 -0.1073 4.7512 17 6 3.1895 -0.8005 5.9168 18 6 4.1480 -0.8913 6.9297 19 6 3.9227 -1.6968 8.0097 20 6 2.7484 -2.4290 8.1141 21 6 1.7885 -2.3543 7.1275 22 6 2.0001 -1.5411 6.0224 23 7 1.2647 -1.2440 4.8924 24 1 0.3888 -1.5950 4.6679 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.7517 -1.7715 -1.2055 29 1 1.6055 -0.2618 -2.1369 30 1 4.0609 -2.2439 -4.0352 31 1 2.0000 1.2084 2.7142 32 1 0.4791 0.2881 2.8037 33 1 5.0651 -0.3255 6.8588 34 1 4.6660 -1.7646 8.7902 35 1 2.5852 -3.0611 8.9745 36 1 0.8762 -2.9258 7.2138 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413017842.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:44 Heat of formation + Delta-G solvation = 34.339880 kcal Electronic energy + Delta-G solvation = -17872.035199 eV Core-core repulsion = 15060.544385 eV Total energy + Delta-G solvation = -2811.490814 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 276.099 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.14025 -38.32047 -36.39282 -34.20156 -34.06399 -32.47349 -30.91655 -29.47893 -28.48751 -25.23019 -23.45027 -23.20097 -22.50348 -21.76199 -18.88364 -18.49998 -18.22272 -17.36241 -16.73660 -16.56554 -16.24555 -15.47900 -15.30895 -14.92917 -14.91538 -14.50646 -14.42773 -13.92943 -13.58060 -13.23867 -12.99654 -12.85495 -12.69756 -12.51469 -12.47033 -12.33619 -12.12554 -11.73567 -11.42062 -11.21427 -11.01794 -10.71537 -10.48003 -9.34500 -9.11755 -8.51879 -8.19812 -6.26390 -0.19435 0.54184 0.71890 1.38139 1.40076 1.50529 1.70237 1.86783 2.00469 2.41545 2.91072 3.00484 3.15538 3.56752 3.93460 4.09304 4.13563 4.18922 4.24788 4.36933 4.46657 4.48295 4.50892 4.57500 4.87356 4.93412 5.02578 5.12814 5.24557 5.40640 5.43065 5.55051 5.55174 5.58274 5.79412 5.96581 6.21698 6.35865 6.83681 6.86249 7.40951 8.91944 Molecular weight = 276.10amu Principal moments of inertia in cm(-1) A = 0.021598 B = 0.004034 C = 0.003577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.131800 B = 6939.590029 C = 7824.904868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.036 4.036 3 H 0.079 0.921 4 C 0.046 3.954 5 C -0.525 4.525 6 H 0.059 0.941 7 C 0.004 3.996 8 N -0.932 5.932 9 Si 0.953 3.047 10 H -0.280 1.280 11 H -0.279 1.279 12 H -0.265 1.265 13 S -0.260 6.260 14 C -0.016 4.016 15 C 0.300 3.700 16 N -0.520 5.520 17 C 0.007 3.993 18 C -0.088 4.088 19 C -0.122 4.122 20 C -0.097 4.097 21 C -0.115 4.115 22 C 0.036 3.964 23 N -0.580 5.580 24 H 0.437 0.563 25 H 0.077 0.923 26 H 0.068 0.932 27 H 0.059 0.941 28 H -0.003 1.003 29 H 0.016 0.984 30 H 0.262 0.738 31 H 0.114 0.886 32 H 0.132 0.868 33 H 0.128 0.872 34 H 0.159 0.841 35 H 0.167 0.833 36 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.855 1.007 22.657 24.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.164 4.164 3 H 0.097 0.903 4 C 0.008 3.992 5 C -0.563 4.563 6 H 0.078 0.922 7 C -0.193 4.193 8 N -0.573 5.573 9 Si 0.779 3.221 10 H -0.206 1.206 11 H -0.205 1.205 12 H -0.190 1.190 13 S -0.033 6.033 14 C -0.165 4.165 15 C 0.032 3.968 16 N -0.242 5.242 17 C -0.112 4.112 18 C -0.108 4.108 19 C -0.142 4.142 20 C -0.116 4.116 21 C -0.136 4.136 22 C -0.075 4.075 23 N -0.193 5.193 24 H 0.279 0.721 25 H 0.096 0.904 26 H 0.087 0.913 27 H 0.078 0.922 28 H 0.015 0.985 29 H 0.034 0.966 30 H 0.071 0.929 31 H 0.132 0.868 32 H 0.150 0.850 33 H 0.146 0.854 34 H 0.177 0.823 35 H 0.185 0.815 36 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -6.586 0.555 22.282 23.242 hybrid contribution -0.510 0.389 -0.786 1.014 sum -7.096 0.945 21.496 22.657 Atomic orbital electron populations 1.22065 0.91808 1.02792 1.02920 1.23243 0.98700 1.00578 0.93898 0.90290 1.18811 0.95194 0.94339 0.90857 1.21610 0.93263 1.33853 1.07606 0.92236 1.25798 1.02964 0.95118 0.95464 1.70062 1.37271 1.37145 1.12848 0.85617 0.80500 0.78773 0.77251 1.20586 1.20455 1.18962 1.87748 1.77457 1.37228 1.00898 1.21770 1.05429 1.01438 0.87836 1.22562 0.88118 0.92019 0.94125 1.70358 1.18952 1.27003 1.07871 1.19613 0.96706 0.99596 0.95237 1.20316 0.97827 1.00270 0.92410 1.21053 0.98938 0.96463 0.97737 1.21390 0.92509 0.98940 0.98763 1.20396 1.02264 0.99388 0.91538 1.19262 0.93911 1.02696 0.91613 1.42883 1.19919 1.39056 1.17485 0.72094 0.90390 0.91317 0.92171 0.98486 0.96572 0.92886 0.86811 0.85006 0.85414 0.82319 0.81524 0.83147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.98 9.10 71.98 0.66 -3.33 16 2 C -0.04 -1.38 2.77 30.60 0.08 -1.30 16 3 H 0.08 3.03 8.14 -2.39 -0.02 3.01 16 4 C 0.05 2.36 4.45 29.85 0.13 2.49 16 5 C -0.52 -30.04 8.53 25.60 0.22 -29.82 16 6 H 0.06 3.40 7.60 -2.91 -0.02 3.38 16 7 C 0.00 0.24 5.46 84.66 0.46 0.70 16 8 N -0.93 -57.05 13.29 21.45 0.28 -56.76 16 9 Si 0.95 46.21 29.54 68.60 2.03 48.23 16 10 H -0.28 -13.48 7.11 99.48 0.71 -12.77 16 11 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 12 H -0.27 -12.44 7.11 99.48 0.71 -11.74 16 13 S -0.26 -9.98 20.44 -56.49 -1.15 -11.13 16 14 C -0.02 -0.43 6.26 71.24 0.45 0.01 16 15 C 0.30 8.96 7.34 137.92 1.01 9.97 16 16 N -0.52 -18.36 11.27 -179.95 -2.03 -20.39 16 17 C 0.01 0.21 7.23 39.45 0.29 0.49 16 18 C -0.09 -2.21 10.05 22.25 0.22 -1.99 16 19 C -0.12 -2.11 9.96 22.02 0.22 -1.89 16 20 C -0.10 -1.43 10.03 22.31 0.22 -1.21 16 21 C -0.12 -2.08 10.07 22.32 0.22 -1.85 16 22 C 0.04 0.92 7.30 38.86 0.28 1.20 16 23 N -0.58 -13.91 6.23 -179.23 -1.12 -15.02 16 24 H 0.44 7.28 8.96 -92.71 -0.83 6.45 16 25 H 0.08 1.70 6.92 -2.39 -0.02 1.68 16 26 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 27 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 28 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 29 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 31 H 0.11 3.11 8.14 -2.39 -0.02 3.09 16 32 H 0.13 2.56 7.14 -2.39 -0.02 2.54 16 33 H 0.13 3.01 8.06 -2.91 -0.02 2.99 16 34 H 0.16 1.68 8.06 -2.91 -0.02 1.65 16 35 H 0.17 1.20 8.06 -2.91 -0.02 1.17 16 36 H 0.15 1.78 8.06 -2.91 -0.02 1.76 16 Total: -1.00 -74.73 320.66 2.74 -71.99 By element: Atomic # 1 Polarization: 9.34 SS G_CDS: 0.25 Total: 9.59 kcal Atomic # 6 Polarization: -30.98 SS G_CDS: 4.47 Total: -26.51 kcal Atomic # 7 Polarization: -89.32 SS G_CDS: -2.86 Total: -92.18 kcal Atomic # 14 Polarization: 46.21 SS G_CDS: 2.03 Total: 48.23 kcal Atomic # 16 Polarization: -9.98 SS G_CDS: -1.15 Total: -11.13 kcal Total: -74.73 2.74 -71.99 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413017842.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.333 kcal (2) G-P(sol) polarization free energy of solvation -74.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.993 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds