Wall clock time and date at job start Mon Mar 30 2020 01:30:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46494 * 109.47504 * 2 1 4 4 C 1.46502 * 120.00333 * 274.89537 * 3 2 1 5 5 C 1.50693 * 109.46907 * 286.07789 * 4 3 2 6 6 H 1.08001 * 120.00765 * 359.97438 * 5 4 3 7 7 C 1.37883 * 119.99634 * 179.97438 * 5 4 3 8 8 N 1.31518 * 119.99905 * 179.97438 * 7 5 4 9 9 Si 1.86796 * 120.00026 * 359.97438 * 7 5 4 10 10 H 1.48497 * 109.47064 * 90.00617 * 9 7 5 11 11 H 1.48508 * 109.46967 * 210.00165 * 9 7 5 12 12 H 1.48493 * 109.47250 * 330.00419 * 9 7 5 13 13 C 1.34780 * 119.99940 * 94.89541 * 3 2 1 14 14 O 1.21549 * 120.00123 * 6.57470 * 13 3 2 15 15 C 1.47809 * 119.99867 * 186.57518 * 13 3 2 16 16 C 1.39249 * 120.19941 * 325.32458 * 15 13 3 17 17 C 1.38180 * 120.07143 * 180.02562 * 16 15 13 18 18 C 1.38331 * 120.47058 * 359.95591 * 17 16 15 19 19 C 1.38430 * 120.39702 * 359.78441 * 18 17 16 20 20 F 1.35103 * 120.03786 * 180.25818 * 19 18 17 21 21 C 1.39617 * 119.92102 * 0.49710 * 19 18 17 22 22 C 1.43201 * 120.23183 * 179.76657 * 21 19 18 23 23 N 5.35583 * 84.86685 * 53.00024 * 2 1 3 24 24 H 1.08996 * 109.47274 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.46688 * 299.99863 * 1 2 3 26 26 H 1.09001 * 109.47243 * 59.99584 * 1 2 3 27 27 H 1.08997 * 109.46925 * 239.99812 * 2 1 3 28 28 H 1.09001 * 109.47243 * 120.00416 * 2 1 3 29 29 H 1.08997 * 109.46773 * 46.07447 * 4 3 2 30 30 H 1.09001 * 109.47100 * 166.07559 * 4 3 2 31 31 H 0.96994 * 120.00026 * 179.97438 * 8 7 5 32 32 H 1.08007 * 119.96612 * 359.97438 * 16 15 13 33 33 H 1.07991 * 119.76924 * 179.97438 * 17 16 15 34 34 H 1.08002 * 119.80271 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1606 2.1079 -1.2641 5 6 3.3623 1.5879 -2.0100 6 1 3.9606 0.7956 -1.5849 7 6 3.6979 2.1237 -3.2353 8 7 4.7470 1.6702 -3.8861 9 14 2.6627 3.4935 -3.9710 10 1 3.1946 4.8077 -3.5293 11 1 2.7141 3.4114 -5.4529 12 1 1.2565 3.3503 -3.5157 13 6 2.3370 1.9832 1.1630 14 8 2.3340 1.3460 2.1981 15 6 2.6900 3.4185 1.1797 16 6 3.3820 3.9820 0.1108 17 6 3.7112 5.3239 0.1294 18 6 3.3572 6.1182 1.2052 19 6 2.6643 5.5793 2.2757 20 9 2.3177 6.3629 3.3203 21 6 2.3285 4.2241 2.2768 22 6 1.6162 3.6587 3.3829 23 7 1.0508 3.2103 4.2602 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 1.2660 1.9621 -1.8695 30 1 2.2916 3.1705 -1.0595 31 1 4.9829 2.0468 -4.7483 32 1 3.6626 3.3695 -0.7334 33 1 4.2483 5.7558 -0.7020 34 1 3.6195 7.1658 1.2083 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426623668.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:54 Heat of formation + Delta-G solvation = -0.508876 kcal Electronic energy + Delta-G solvation = -21222.948208 eV Core-core repulsion = 17843.733062 eV Total energy + Delta-G solvation = -3379.215146 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 276.101 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.06539 -40.33859 -38.10833 -36.36848 -35.53668 -32.99466 -31.92978 -31.33778 -29.76588 -28.07237 -24.84167 -23.45296 -22.97440 -22.14652 -19.73146 -18.46625 -17.54946 -17.21862 -16.70577 -15.93491 -15.72510 -15.52887 -15.11183 -14.75437 -14.26180 -13.77822 -13.55962 -13.38753 -13.13336 -13.06847 -12.97809 -12.65140 -12.32484 -12.22411 -11.89258 -11.77625 -11.65847 -11.19800 -11.06149 -10.60464 -10.54193 -10.37570 -9.81742 -9.48468 -9.11782 -9.00047 -8.59065 -7.96835 -6.42617 -4.46962 0.50203 0.91986 2.84113 2.90291 3.00265 3.12295 3.13789 3.18812 3.42979 3.82016 3.89592 4.07057 4.13956 4.61983 4.84224 4.89483 5.04271 5.25135 5.43793 5.55032 5.67019 5.74890 5.77392 5.93818 6.14861 6.20195 6.22543 6.30079 6.37205 6.48826 6.60358 6.71441 7.05797 7.23694 7.66994 7.84032 8.20313 8.54443 8.67225 9.13882 10.68721 Molecular weight = 276.10amu Principal moments of inertia in cm(-1) A = 0.015827 B = 0.007810 C = 0.005741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1768.711078 B = 3584.063135 C = 4876.120956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.113 3.887 3 N -0.574 5.574 4 C 0.176 3.824 5 C -0.548 4.548 6 H 0.084 0.916 7 C 0.082 3.918 8 N -0.879 5.879 9 Si 0.860 3.140 10 H -0.266 1.266 11 H -0.280 1.280 12 H -0.261 1.261 13 C 0.549 3.451 14 O -0.547 6.547 15 C -0.056 4.056 16 C -0.103 4.103 17 C -0.076 4.076 18 C -0.135 4.135 19 C 0.124 3.876 20 F -0.130 7.130 21 C -0.017 4.017 22 C 0.258 3.742 23 N -0.397 5.397 24 H 0.062 0.938 25 H 0.050 0.950 26 H 0.057 0.943 27 H 0.088 0.912 28 H 0.079 0.921 29 H 0.033 0.967 30 H 0.057 0.943 31 H 0.270 0.730 32 H 0.197 0.803 33 H 0.147 0.853 34 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.403 8.099 3.235 9.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.009 4.009 3 N -0.303 5.303 4 C 0.055 3.945 5 C -0.586 4.586 6 H 0.102 0.898 7 C -0.124 4.124 8 N -0.514 5.514 9 Si 0.685 3.315 10 H -0.191 1.191 11 H -0.205 1.205 12 H -0.185 1.185 13 C 0.336 3.664 14 O -0.427 6.427 15 C -0.061 4.061 16 C -0.121 4.121 17 C -0.095 4.095 18 C -0.154 4.154 19 C 0.102 3.898 20 F -0.109 7.109 21 C -0.022 4.022 22 C -0.057 4.057 23 N -0.072 5.072 24 H 0.081 0.919 25 H 0.069 0.931 26 H 0.076 0.924 27 H 0.106 0.894 28 H 0.097 0.903 29 H 0.051 0.949 30 H 0.074 0.926 31 H 0.081 0.919 32 H 0.213 0.787 33 H 0.165 0.835 34 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -4.197 7.072 4.965 9.607 hybrid contribution -0.236 1.022 -0.878 1.368 sum -4.434 8.094 4.086 10.093 Atomic orbital electron populations 1.22116 0.96622 1.01687 1.01837 1.21358 0.93366 0.82587 1.03635 1.47778 1.61864 1.13983 1.06712 1.20706 0.98483 0.93888 0.81393 1.21305 1.10897 1.22682 1.03730 0.89796 1.24896 0.94664 0.96596 0.96249 1.69875 1.25257 1.41535 1.14773 0.87082 0.81814 0.82854 0.79704 1.19110 1.20507 1.18489 1.18039 0.78065 0.86135 0.84141 1.90768 1.54122 1.65319 1.32443 1.19933 0.98938 0.94159 0.93113 1.22881 0.94187 0.96448 0.98565 1.21361 0.97141 0.93460 0.97556 1.21258 0.99531 1.01724 0.92897 1.17385 0.99558 0.86598 0.86226 1.91530 1.90138 1.73543 1.55644 1.15820 1.02987 0.91664 0.91734 1.24989 0.93966 0.93718 0.93060 1.81084 1.08907 1.06914 1.10295 0.91904 0.93097 0.92409 0.89375 0.90292 0.94883 0.92574 0.91950 0.78704 0.83501 0.83537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.49 10.24 37.16 0.38 -2.11 16 2 C 0.11 2.00 6.17 -4.05 -0.02 1.97 16 3 N -0.57 -11.18 2.51 -176.20 -0.44 -11.62 16 4 C 0.18 3.49 3.79 -5.20 -0.02 3.48 16 5 C -0.55 -12.82 8.10 -34.44 -0.28 -13.10 16 6 H 0.08 2.23 8.06 -52.49 -0.42 1.81 16 7 C 0.08 1.96 5.47 -17.82 -0.10 1.86 16 8 N -0.88 -23.09 13.96 55.43 0.77 -22.31 16 9 Si 0.86 17.29 27.47 -169.99 -4.67 12.62 16 10 H -0.27 -4.94 7.11 56.52 0.40 -4.54 16 11 H -0.28 -5.81 7.11 56.52 0.40 -5.40 16 12 H -0.26 -5.04 6.54 56.52 0.37 -4.67 16 13 C 0.55 10.97 7.14 -12.34 -0.09 10.88 16 14 O -0.55 -12.21 14.82 5.32 0.08 -12.13 16 15 C -0.06 -0.96 5.53 -104.63 -0.58 -1.54 16 16 C -0.10 -1.62 7.41 -39.23 -0.29 -1.91 16 17 C -0.08 -0.93 10.02 -39.57 -0.40 -1.32 16 18 C -0.14 -1.48 10.01 -39.48 -0.40 -1.88 16 19 C 0.12 1.68 7.27 -39.00 -0.28 1.39 16 20 F -0.13 -1.77 16.80 2.25 0.04 -1.73 16 21 C -0.02 -0.28 5.76 -106.48 -0.61 -0.89 16 22 C 0.26 4.78 12.88 -22.47 -0.29 4.49 16 23 N -0.40 -7.89 18.54 41.84 0.78 -7.11 16 24 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 25 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.06 0.86 8.10 -51.93 -0.42 0.44 16 27 H 0.09 1.56 7.86 -51.93 -0.41 1.15 16 28 H 0.08 1.43 7.21 -51.93 -0.37 1.05 16 29 H 0.03 0.66 7.16 -51.93 -0.37 0.29 16 30 H 0.06 1.05 3.12 -52.71 -0.16 0.89 16 31 H 0.27 6.65 8.31 -40.82 -0.34 6.31 16 32 H 0.20 3.52 4.07 -52.48 -0.21 3.31 16 33 H 0.15 1.44 8.06 -52.49 -0.42 1.02 16 34 H 0.15 1.13 8.06 -52.49 -0.42 0.70 16 LS Contribution 300.92 15.07 4.53 4.53 Total: -1.00 -28.20 300.92 -5.12 -33.32 By element: Atomic # 1 Polarization: 6.35 SS G_CDS: -3.23 Total: 3.12 kcal Atomic # 6 Polarization: 4.29 SS G_CDS: -2.98 Total: 1.31 kcal Atomic # 7 Polarization: -42.15 SS G_CDS: 1.11 Total: -41.04 kcal Atomic # 8 Polarization: -12.21 SS G_CDS: 0.08 Total: -12.13 kcal Atomic # 9 Polarization: -1.77 SS G_CDS: 0.04 Total: -1.73 kcal Atomic # 14 Polarization: 17.29 SS G_CDS: -4.67 Total: 12.62 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -28.20 -5.12 -33.32 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426623668.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.808 kcal (2) G-P(sol) polarization free energy of solvation -28.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds