Wall clock time and date at job start Mon Mar 30 2020 01:30:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46494 * 109.47504 * 2 1 4 4 C 1.46502 * 120.00333 * 274.89537 * 3 2 1 5 5 C 1.50693 * 109.46907 * 286.07789 * 4 3 2 6 6 H 1.08001 * 120.00765 * 359.97438 * 5 4 3 7 7 C 1.37883 * 119.99634 * 179.97438 * 5 4 3 8 8 N 1.31518 * 119.99905 * 179.97438 * 7 5 4 9 9 Si 1.86796 * 120.00026 * 359.97438 * 7 5 4 10 10 H 1.48497 * 109.47064 * 90.00617 * 9 7 5 11 11 H 1.48508 * 109.46967 * 210.00165 * 9 7 5 12 12 H 1.48493 * 109.47250 * 330.00419 * 9 7 5 13 13 C 1.34780 * 119.99940 * 94.89541 * 3 2 1 14 14 O 1.21549 * 120.00123 * 6.57470 * 13 3 2 15 15 C 1.47809 * 119.99867 * 186.57518 * 13 3 2 16 16 C 1.39249 * 120.19941 * 325.32458 * 15 13 3 17 17 C 1.38180 * 120.07143 * 180.02562 * 16 15 13 18 18 C 1.38331 * 120.47058 * 359.95591 * 17 16 15 19 19 C 1.38430 * 120.39702 * 359.78441 * 18 17 16 20 20 F 1.35103 * 120.03786 * 180.25818 * 19 18 17 21 21 C 1.39617 * 119.92102 * 0.49710 * 19 18 17 22 22 C 1.43201 * 120.23183 * 179.76657 * 21 19 18 23 23 N 5.35583 * 84.86685 * 53.00024 * 2 1 3 24 24 H 1.08996 * 109.47274 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.46688 * 299.99863 * 1 2 3 26 26 H 1.09001 * 109.47243 * 59.99584 * 1 2 3 27 27 H 1.08997 * 109.46925 * 239.99812 * 2 1 3 28 28 H 1.09001 * 109.47243 * 120.00416 * 2 1 3 29 29 H 1.08997 * 109.46773 * 46.07447 * 4 3 2 30 30 H 1.09001 * 109.47100 * 166.07559 * 4 3 2 31 31 H 0.96994 * 120.00026 * 179.97438 * 8 7 5 32 32 H 1.08007 * 119.96612 * 359.97438 * 16 15 13 33 33 H 1.07991 * 119.76924 * 179.97438 * 17 16 15 34 34 H 1.08002 * 119.80271 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1606 2.1079 -1.2641 5 6 3.3623 1.5879 -2.0100 6 1 3.9606 0.7956 -1.5849 7 6 3.6979 2.1237 -3.2353 8 7 4.7470 1.6702 -3.8861 9 14 2.6627 3.4935 -3.9710 10 1 3.1946 4.8077 -3.5293 11 1 2.7141 3.4114 -5.4529 12 1 1.2565 3.3503 -3.5157 13 6 2.3370 1.9832 1.1630 14 8 2.3340 1.3460 2.1981 15 6 2.6900 3.4185 1.1797 16 6 3.3820 3.9820 0.1108 17 6 3.7112 5.3239 0.1294 18 6 3.3572 6.1182 1.2052 19 6 2.6643 5.5793 2.2757 20 9 2.3177 6.3629 3.3203 21 6 2.3285 4.2241 2.2768 22 6 1.6162 3.6587 3.3829 23 7 1.0508 3.2103 4.2602 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 1.2660 1.9621 -1.8695 30 1 2.2916 3.1705 -1.0595 31 1 4.9829 2.0468 -4.7483 32 1 3.6626 3.3695 -0.7334 33 1 4.2483 5.7558 -0.7020 34 1 3.6195 7.1658 1.2083 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000426623668.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:53 Heat of formation + Delta-G solvation = -16.818198 kcal Electronic energy + Delta-G solvation = -21223.655433 eV Core-core repulsion = 17843.733062 eV Total energy + Delta-G solvation = -3379.922371 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 276.101 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -50.14071 -41.72874 -39.41947 -37.82784 -37.09747 -34.73235 -33.25416 -32.57135 -31.05059 -29.75145 -26.09008 -24.82056 -24.44897 -23.52303 -21.09543 -19.74379 -19.02009 -18.86815 -17.98875 -17.22394 -16.95223 -16.84464 -16.34301 -16.26910 -15.83418 -15.12470 -14.85082 -14.78635 -14.60627 -14.46378 -14.25127 -14.20385 -13.70066 -13.62981 -13.22278 -13.10542 -12.79243 -12.68938 -12.55288 -12.09014 -12.01153 -11.85115 -11.61774 -10.99061 -10.74519 -10.27049 -9.81242 -9.55667 -8.26512 -6.37006 -0.68742 -0.19871 1.45126 1.46168 1.52387 1.60405 1.60499 1.76910 2.00822 2.39717 2.56569 2.62927 2.95017 3.06004 3.37410 3.79653 3.92560 4.12009 4.19164 4.31086 4.38868 4.46641 4.63064 4.65734 4.83293 4.91761 4.92727 4.96668 5.11348 5.22890 5.25823 5.39199 5.59230 5.65147 6.12470 6.27294 6.51628 6.70451 7.02349 7.29359 8.88642 Molecular weight = 276.10amu Principal moments of inertia in cm(-1) A = 0.015827 B = 0.007810 C = 0.005741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1768.711078 B = 3584.063135 C = 4876.120956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.107 3.893 3 N -0.580 5.580 4 C 0.183 3.817 5 C -0.545 4.545 6 H 0.033 0.967 7 C 0.032 3.968 8 N -0.933 5.933 9 Si 0.921 3.079 10 H -0.229 1.229 11 H -0.291 1.291 12 H -0.245 1.245 13 C 0.541 3.459 14 O -0.582 6.582 15 C -0.073 4.073 16 C -0.116 4.116 17 C -0.055 4.055 18 C -0.103 4.103 19 C 0.136 3.864 20 F -0.128 7.128 21 C -0.036 4.036 22 C 0.267 3.733 23 N -0.437 5.437 24 H 0.087 0.913 25 H 0.039 0.961 26 H 0.063 0.937 27 H 0.081 0.919 28 H 0.067 0.933 29 H 0.039 0.961 30 H 0.083 0.917 31 H 0.271 0.729 32 H 0.173 0.827 33 H 0.184 0.816 34 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.008 11.872 2.459 12.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.015 4.015 3 N -0.308 5.308 4 C 0.063 3.937 5 C -0.583 4.583 6 H 0.052 0.948 7 C -0.169 4.169 8 N -0.571 5.571 9 Si 0.742 3.258 10 H -0.152 1.152 11 H -0.217 1.217 12 H -0.168 1.168 13 C 0.329 3.671 14 O -0.464 6.464 15 C -0.079 4.079 16 C -0.133 4.133 17 C -0.073 4.073 18 C -0.122 4.122 19 C 0.114 3.886 20 F -0.106 7.106 21 C -0.042 4.042 22 C -0.048 4.048 23 N -0.113 5.113 24 H 0.106 0.894 25 H 0.059 0.941 26 H 0.082 0.918 27 H 0.099 0.901 28 H 0.085 0.915 29 H 0.057 0.943 30 H 0.100 0.900 31 H 0.081 0.919 32 H 0.190 0.810 33 H 0.201 0.799 34 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -4.815 10.850 4.208 12.594 hybrid contribution 0.053 -0.184 -0.595 0.626 sum -4.761 10.665 3.612 12.226 Atomic orbital electron populations 1.22017 0.94194 1.03318 1.01504 1.21450 0.95340 0.82076 1.02664 1.47905 1.61711 1.14498 1.06714 1.20633 0.96803 0.95178 0.81113 1.21294 1.11444 1.21361 1.04182 0.94823 1.25715 0.95607 0.99200 0.96347 1.70037 1.27748 1.43831 1.15476 0.86113 0.80789 0.80989 0.77916 1.15174 1.21700 1.16845 1.18586 0.77318 0.87556 0.83603 1.90735 1.55685 1.66548 1.33452 1.19671 1.01059 0.92549 0.94580 1.22645 0.95138 0.98136 0.97432 1.21735 0.95399 0.91484 0.98663 1.21723 0.96350 1.03629 0.90472 1.17540 0.98938 0.85307 0.86814 1.91549 1.90084 1.73164 1.55837 1.15917 1.04295 0.93040 0.90919 1.25503 0.93319 0.92948 0.93036 1.81064 1.10516 1.07951 1.11738 0.89374 0.94136 0.91793 0.90093 0.91482 0.94328 0.90004 0.91937 0.81033 0.79875 0.78613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.57 10.24 71.98 0.74 -3.84 16 2 C 0.11 3.93 6.17 86.38 0.53 4.46 16 3 N -0.58 -23.09 2.51 -829.65 -2.08 -25.17 16 4 C 0.18 7.20 3.79 85.63 0.32 7.53 16 5 C -0.54 -26.10 8.10 25.60 0.21 -25.90 16 6 H 0.03 1.90 8.06 -2.91 -0.02 1.88 16 7 C 0.03 1.54 5.47 84.66 0.46 2.00 16 8 N -0.93 -50.19 13.96 21.45 0.30 -49.89 16 9 Si 0.92 33.71 27.47 68.60 1.88 35.59 16 10 H -0.23 -7.02 7.11 99.48 0.71 -6.32 16 11 H -0.29 -11.19 7.11 99.48 0.71 -10.48 16 12 H -0.25 -8.31 6.54 99.48 0.65 -7.66 16 13 C 0.54 22.13 7.14 86.78 0.62 22.75 16 14 O -0.58 -27.12 14.82 -3.87 -0.06 -27.17 16 15 C -0.07 -2.46 5.53 -19.87 -0.11 -2.57 16 16 C -0.12 -3.34 7.41 22.50 0.17 -3.17 16 17 C -0.05 -1.02 10.02 22.28 0.22 -0.80 16 18 C -0.10 -1.63 10.01 22.34 0.22 -1.41 16 19 C 0.14 3.16 7.27 22.65 0.16 3.32 16 20 F -0.13 -3.02 16.80 44.97 0.76 -2.26 16 21 C -0.04 -1.14 5.76 -21.07 -0.12 -1.26 16 22 C 0.27 9.89 12.88 88.33 1.14 11.03 16 23 N -0.44 -17.71 18.54 19.00 0.35 -17.36 16 24 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 25 H 0.04 1.29 8.14 -2.38 -0.02 1.27 16 26 H 0.06 1.83 8.10 -2.39 -0.02 1.81 16 27 H 0.08 3.02 7.86 -2.39 -0.02 3.00 16 28 H 0.07 2.58 7.21 -2.39 -0.02 2.56 16 29 H 0.04 1.48 7.16 -2.39 -0.02 1.47 16 30 H 0.08 2.88 3.12 -3.12 -0.01 2.87 16 31 H 0.27 13.61 8.31 -92.71 -0.77 12.84 16 32 H 0.17 5.95 4.07 -2.91 -0.01 5.94 16 33 H 0.18 2.25 8.06 -2.92 -0.02 2.23 16 34 H 0.20 1.34 8.06 -2.91 -0.02 1.32 16 Total: -1.00 -66.04 300.92 6.82 -59.23 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: 1.09 Total: 14.89 kcal Atomic # 6 Polarization: 7.58 SS G_CDS: 4.57 Total: 12.15 kcal Atomic # 7 Polarization: -91.00 SS G_CDS: -1.43 Total: -92.42 kcal Atomic # 8 Polarization: -27.12 SS G_CDS: -0.06 Total: -27.17 kcal Atomic # 9 Polarization: -3.02 SS G_CDS: 0.76 Total: -2.26 kcal Atomic # 14 Polarization: 33.71 SS G_CDS: 1.88 Total: 35.59 kcal Total: -66.04 6.82 -59.23 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426623668.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.410 kcal (2) G-P(sol) polarization free energy of solvation -66.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds