Wall clock time and date at job start Mon Mar 30 2020 01:29:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46506 * 109.47098 * 2 1 4 4 C 1.36942 * 119.99842 * 275.31267 * 3 2 1 5 5 H 1.07999 * 119.99923 * 37.57846 * 4 3 2 6 6 C 1.38809 * 119.99440 * 217.57769 * 4 3 2 7 7 N 1.31620 * 120.00696 * 21.43309 * 6 4 3 8 8 Si 1.86808 * 119.99754 * 201.43334 * 6 4 3 9 9 H 1.48502 * 109.46909 * 59.99845 * 8 6 4 10 10 H 1.48499 * 109.47147 * 180.02562 * 8 6 4 11 11 H 1.48504 * 109.46916 * 300.00241 * 8 6 4 12 12 C 1.46493 * 119.99985 * 95.31594 * 3 2 1 13 13 C 1.50704 * 109.47164 * 269.99935 * 12 3 2 14 14 N 1.27937 * 124.23600 * 90.02168 * 13 12 3 15 15 C 1.34668 * 117.84109 * 180.02562 * 14 13 12 16 16 C 1.40967 * 129.68905 * 179.71541 * 15 14 13 17 17 C 1.36174 * 120.42771 * 179.85494 * 16 15 14 18 18 C 1.50698 * 119.61201 * 180.22306 * 17 16 15 19 19 C 1.38800 * 120.77522 * 0.45271 * 17 16 15 20 20 C 1.37652 * 120.06410 * 359.77098 * 19 17 16 21 21 C 1.39331 * 119.95731 * 0.02562 * 20 19 17 22 22 S 1.70641 * 124.23681 * 270.02331 * 13 12 3 23 23 H 1.09005 * 109.47227 * 59.99560 * 1 2 3 24 24 H 1.09000 * 109.47267 * 179.97438 * 1 2 3 25 25 H 1.09007 * 109.46623 * 300.00120 * 1 2 3 26 26 H 1.09003 * 109.46586 * 240.00396 * 2 1 3 27 27 H 1.08991 * 109.47109 * 120.00380 * 2 1 3 28 28 H 0.96991 * 120.00548 * 180.02562 * 7 6 4 29 29 H 1.08996 * 109.47760 * 149.99592 * 12 3 2 30 30 H 1.09001 * 109.47088 * 29.99638 * 12 3 2 31 31 H 1.08006 * 119.78336 * 0.28223 * 16 15 14 32 32 H 1.08990 * 109.46926 * 270.22372 * 18 17 16 33 33 H 1.08994 * 109.47240 * 30.23233 * 18 17 16 34 34 H 1.09008 * 109.46713 * 150.22786 * 18 17 16 35 35 H 1.08001 * 119.96379 * 179.74892 * 19 17 16 36 36 H 1.08006 * 120.01663 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1430 2.0634 -1.1809 5 1 1.4104 1.9279 -1.9627 6 6 3.2111 2.9290 -1.3728 7 7 4.3027 2.7981 -0.6492 8 14 3.0992 4.2798 -2.6583 9 1 1.9625 5.1787 -2.3340 10 1 4.3621 5.0609 -2.6668 11 1 2.8841 3.6729 -3.9966 12 6 2.3733 2.0327 1.2632 13 6 1.1612 2.7276 1.8280 14 7 0.3234 2.1797 2.6247 15 6 -0.7166 2.9215 3.0511 16 6 -1.7756 2.5748 3.9144 17 6 -2.7384 3.4862 4.2255 18 6 -3.8596 3.0973 5.1544 19 6 -2.7018 4.7676 3.6934 20 6 -1.6820 5.1327 2.8440 21 6 -0.6859 4.2147 2.5178 22 16 0.7344 4.3438 1.4851 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5139 0.8901 26 1 1.8932 -0.5138 -0.8901 27 1 1.8933 -0.5138 0.8899 28 1 5.0488 3.4031 -0.7831 29 1 3.1618 2.7641 1.0860 30 1 2.7256 1.2833 1.9720 31 1 -1.8200 1.5819 4.3373 32 1 -4.6855 2.6858 4.5745 33 1 -3.5027 2.3481 5.8609 34 1 -4.2013 3.9772 5.6996 35 1 -3.4744 5.4788 3.9458 36 1 -1.6540 6.1302 2.4307 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000528364352.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:53 Heat of formation + Delta-G solvation = 65.665855 kcal Electronic energy + Delta-G solvation = -18931.741286 eV Core-core repulsion = 16121.608868 eV Total energy + Delta-G solvation = -2810.132418 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 276.099 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.89734 -37.19100 -35.70621 -32.21389 -32.00068 -30.52638 -29.01011 -27.08878 -26.34371 -24.09642 -22.55797 -22.15792 -20.53500 -19.66916 -17.76771 -16.83191 -16.06319 -15.38711 -14.99221 -14.46727 -14.32324 -13.83148 -13.82100 -13.65897 -13.22108 -12.94765 -12.46638 -12.31390 -12.00259 -11.81822 -11.64947 -11.40584 -11.15361 -11.01815 -10.82237 -10.61244 -10.37121 -10.29727 -10.12865 -9.80533 -9.54235 -8.93347 -8.64856 -8.05809 -7.60825 -6.81752 -6.02327 -3.56056 0.95481 1.42674 1.93973 2.53163 2.86782 3.29026 3.34856 3.38769 4.02633 4.34150 4.51064 4.88534 5.02845 5.15709 5.27915 5.39228 5.43781 5.56210 5.60240 5.70605 5.91567 6.03369 6.08050 6.17638 6.35669 6.37158 6.41013 6.51667 6.66422 6.67513 6.73541 6.89497 7.01301 7.16578 7.24949 7.66816 8.28556 8.37036 8.95125 9.56625 10.15518 10.98967 Molecular weight = 276.10amu Principal moments of inertia in cm(-1) A = 0.023147 B = 0.005973 C = 0.005208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.374876 B = 4686.443656 C = 5374.809584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.145 3.855 3 N -0.563 5.563 4 C -0.261 4.261 5 H 0.064 0.936 6 C 0.019 3.981 7 N -0.878 5.878 8 Si 0.892 3.108 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.277 1.277 12 C 0.201 3.799 13 C 0.124 3.876 14 N -0.497 5.497 15 C 0.102 3.898 16 C -0.080 4.080 17 C -0.081 4.081 18 C -0.109 4.109 19 C -0.127 4.127 20 C -0.061 4.061 21 C -0.214 4.214 22 S 0.096 5.904 23 H 0.044 0.956 24 H 0.037 0.963 25 H 0.053 0.947 26 H 0.050 0.950 27 H 0.040 0.960 28 H 0.261 0.739 29 H 0.117 0.883 30 H 0.064 0.936 31 H 0.125 0.875 32 H 0.068 0.932 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.125 0.875 36 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.554 2.562 8.363 13.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.019 3.981 3 N -0.282 5.282 4 C -0.392 4.392 5 H 0.082 0.918 6 C -0.183 4.183 7 N -0.519 5.519 8 Si 0.720 3.280 9 H -0.201 1.201 10 H -0.212 1.212 11 H -0.203 1.203 12 C 0.070 3.930 13 C -0.162 4.162 14 N -0.212 5.212 15 C -0.021 4.021 16 C -0.101 4.101 17 C -0.085 4.085 18 C -0.165 4.165 19 C -0.149 4.149 20 C -0.084 4.084 21 C -0.333 4.333 22 S 0.354 5.646 23 H 0.064 0.936 24 H 0.056 0.944 25 H 0.072 0.928 26 H 0.068 0.932 27 H 0.059 0.941 28 H 0.071 0.929 29 H 0.135 0.865 30 H 0.082 0.918 31 H 0.143 0.857 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.143 0.857 36 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -9.707 2.802 7.815 12.773 hybrid contribution -0.862 0.524 -0.205 1.029 sum -10.569 3.326 7.610 13.442 Atomic orbital electron populations 1.22320 0.99738 0.99263 1.01636 1.20905 0.91864 0.86059 0.99233 1.43780 1.74819 1.08301 1.01309 1.19052 1.04946 1.21867 0.93296 0.91816 1.25213 0.93963 1.00944 0.98181 1.69952 1.03042 1.36950 1.41955 0.86516 0.77491 0.82282 0.81675 1.20140 1.21167 1.20302 1.20072 0.88981 0.97285 0.86662 1.29286 1.01580 0.93164 0.92152 1.66391 1.03840 1.35432 1.15568 1.19342 0.94900 0.89094 0.98727 1.20100 0.92525 0.99601 0.97871 1.19298 0.96589 0.93784 0.98785 1.20752 0.96206 1.01792 0.97797 1.20798 0.98683 0.96168 0.99265 1.20249 0.92636 0.97892 0.97599 1.24084 1.03458 0.99836 1.05948 1.84280 1.18007 1.16211 1.46074 0.93644 0.94431 0.92755 0.93196 0.94123 0.92878 0.86525 0.91808 0.85680 0.91303 0.91606 0.91622 0.85717 0.85969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.38 10.21 37.16 0.38 -3.00 16 2 C 0.15 3.11 6.44 -4.04 -0.03 3.08 16 3 N -0.56 -13.64 2.42 -174.61 -0.42 -14.06 16 4 C -0.26 -6.80 9.45 -15.06 -0.14 -6.94 16 5 H 0.06 1.69 7.92 -52.49 -0.42 1.27 16 6 C 0.02 0.49 4.95 -17.43 -0.09 0.41 16 7 N -0.88 -23.56 11.47 55.49 0.64 -22.93 16 8 Si 0.89 20.55 29.61 -169.99 -5.03 15.52 16 9 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 10 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 12 C 0.20 4.65 5.89 -5.20 -0.03 4.62 16 13 C 0.12 2.71 6.74 -13.90 -0.09 2.62 16 14 N -0.50 -10.56 9.55 -9.08 -0.09 -10.64 16 15 C 0.10 1.97 7.00 -84.96 -0.59 1.38 16 16 C -0.08 -1.28 9.66 -39.29 -0.38 -1.66 16 17 C -0.08 -1.08 5.83 -105.16 -0.61 -1.69 16 18 C -0.11 -1.03 9.98 36.00 0.36 -0.67 16 19 C -0.13 -1.67 9.68 -39.59 -0.38 -2.05 16 20 C -0.06 -0.94 10.07 -39.39 -0.40 -1.33 16 21 C -0.21 -3.99 6.56 -38.55 -0.25 -4.24 16 22 S 0.10 1.96 23.11 -107.50 -2.48 -0.52 16 23 H 0.04 0.94 8.14 -51.93 -0.42 0.51 16 24 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.05 1.15 6.96 -51.93 -0.36 0.79 16 26 H 0.05 1.06 8.08 -51.93 -0.42 0.64 16 27 H 0.04 0.82 7.83 -51.93 -0.41 0.42 16 28 H 0.26 6.76 8.31 -40.82 -0.34 6.42 16 29 H 0.12 2.93 5.52 -51.93 -0.29 2.64 16 30 H 0.06 1.42 7.86 -51.93 -0.41 1.02 16 31 H 0.13 1.82 8.06 -52.48 -0.42 1.40 16 32 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.06 0.57 8.07 -51.93 -0.42 0.15 16 34 H 0.06 0.52 8.08 -51.92 -0.42 0.10 16 35 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 36 H 0.12 1.59 8.06 -52.48 -0.42 1.17 16 LS Contribution 317.16 15.07 4.78 4.78 Total: -1.00 -27.98 317.16 -9.68 -37.66 By element: Atomic # 1 Polarization: 4.49 SS G_CDS: -4.81 Total: -0.32 kcal Atomic # 6 Polarization: -7.22 SS G_CDS: -2.26 Total: -9.48 kcal Atomic # 7 Polarization: -47.76 SS G_CDS: 0.13 Total: -47.63 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.03 Total: 15.52 kcal Atomic # 16 Polarization: 1.96 SS G_CDS: -2.48 Total: -0.52 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -27.98 -9.68 -37.66 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528364352.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.321 kcal (2) G-P(sol) polarization free energy of solvation -27.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.655 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds