Wall clock time and date at job start Mon Mar 30 2020 01:29:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46506 * 109.47098 * 2 1 4 4 C 1.36942 * 119.99842 * 275.31267 * 3 2 1 5 5 H 1.07999 * 119.99923 * 37.57846 * 4 3 2 6 6 C 1.38809 * 119.99440 * 217.57769 * 4 3 2 7 7 N 1.31620 * 120.00696 * 21.43309 * 6 4 3 8 8 Si 1.86808 * 119.99754 * 201.43334 * 6 4 3 9 9 H 1.48502 * 109.46909 * 59.99845 * 8 6 4 10 10 H 1.48499 * 109.47147 * 180.02562 * 8 6 4 11 11 H 1.48504 * 109.46916 * 300.00241 * 8 6 4 12 12 C 1.46493 * 119.99985 * 95.31594 * 3 2 1 13 13 C 1.50704 * 109.47164 * 269.99935 * 12 3 2 14 14 N 1.27937 * 124.23600 * 90.02168 * 13 12 3 15 15 C 1.34668 * 117.84109 * 180.02562 * 14 13 12 16 16 C 1.40967 * 129.68905 * 179.71541 * 15 14 13 17 17 C 1.36174 * 120.42771 * 179.85494 * 16 15 14 18 18 C 1.50698 * 119.61201 * 180.22306 * 17 16 15 19 19 C 1.38800 * 120.77522 * 0.45271 * 17 16 15 20 20 C 1.37652 * 120.06410 * 359.77098 * 19 17 16 21 21 C 1.39331 * 119.95731 * 0.02562 * 20 19 17 22 22 S 1.70641 * 124.23681 * 270.02331 * 13 12 3 23 23 H 1.09005 * 109.47227 * 59.99560 * 1 2 3 24 24 H 1.09000 * 109.47267 * 179.97438 * 1 2 3 25 25 H 1.09007 * 109.46623 * 300.00120 * 1 2 3 26 26 H 1.09003 * 109.46586 * 240.00396 * 2 1 3 27 27 H 1.08991 * 109.47109 * 120.00380 * 2 1 3 28 28 H 0.96991 * 120.00548 * 180.02562 * 7 6 4 29 29 H 1.08996 * 109.47760 * 149.99592 * 12 3 2 30 30 H 1.09001 * 109.47088 * 29.99638 * 12 3 2 31 31 H 1.08006 * 119.78336 * 0.28223 * 16 15 14 32 32 H 1.08990 * 109.46926 * 270.22372 * 18 17 16 33 33 H 1.08994 * 109.47240 * 30.23233 * 18 17 16 34 34 H 1.09008 * 109.46713 * 150.22786 * 18 17 16 35 35 H 1.08001 * 119.96379 * 179.74892 * 19 17 16 36 36 H 1.08006 * 120.01663 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1430 2.0634 -1.1809 5 1 1.4104 1.9279 -1.9627 6 6 3.2111 2.9290 -1.3728 7 7 4.3027 2.7981 -0.6492 8 14 3.0992 4.2798 -2.6583 9 1 1.9625 5.1787 -2.3340 10 1 4.3621 5.0609 -2.6668 11 1 2.8841 3.6729 -3.9966 12 6 2.3733 2.0327 1.2632 13 6 1.1612 2.7276 1.8280 14 7 0.3234 2.1797 2.6247 15 6 -0.7166 2.9215 3.0511 16 6 -1.7756 2.5748 3.9144 17 6 -2.7384 3.4862 4.2255 18 6 -3.8596 3.0973 5.1544 19 6 -2.7018 4.7676 3.6934 20 6 -1.6820 5.1327 2.8440 21 6 -0.6859 4.2147 2.5178 22 16 0.7344 4.3438 1.4851 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5139 0.8901 26 1 1.8932 -0.5138 -0.8901 27 1 1.8933 -0.5138 0.8899 28 1 5.0488 3.4031 -0.7831 29 1 3.1618 2.7641 1.0860 30 1 2.7256 1.2833 1.9720 31 1 -1.8200 1.5819 4.3373 32 1 -4.6855 2.6858 4.5745 33 1 -3.5027 2.3481 5.8609 34 1 -4.2013 3.9772 5.6996 35 1 -3.4744 5.4788 3.9458 36 1 -1.6540 6.1302 2.4307 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000528364352.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:52 Heat of formation + Delta-G solvation = 51.645334 kcal Electronic energy + Delta-G solvation = -18932.349261 eV Core-core repulsion = 16121.608868 eV Total energy + Delta-G solvation = -2810.740393 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 276.099 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.26195 -38.67481 -37.34957 -33.90774 -33.34923 -32.02601 -30.57274 -28.56015 -27.64944 -25.89339 -24.00566 -23.44400 -22.27220 -21.11939 -19.23738 -18.65094 -17.42827 -16.93936 -16.60198 -16.07706 -15.63156 -15.57885 -15.27782 -14.95934 -14.55276 -14.26311 -14.09409 -13.63603 -13.28136 -13.23424 -13.08121 -12.85730 -12.65226 -12.61368 -12.52336 -12.25950 -12.13948 -11.93336 -11.71591 -11.51292 -10.88778 -10.64032 -10.48199 -9.41288 -9.00931 -8.72267 -7.96297 -5.55986 -0.43804 0.20922 0.45611 0.98963 1.41952 1.47559 1.48988 1.53997 2.45375 2.73713 3.03408 3.24689 3.65558 3.74438 3.96767 4.24120 4.26906 4.36829 4.38453 4.55554 4.68371 4.72115 4.74971 4.81721 4.90523 5.00710 5.02223 5.19781 5.20064 5.24362 5.27796 5.39372 5.50806 5.56593 5.63903 5.88921 6.36341 6.80359 7.02604 7.67399 8.24351 9.03042 Molecular weight = 276.10amu Principal moments of inertia in cm(-1) A = 0.023147 B = 0.005973 C = 0.005208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1209.374876 B = 4686.443656 C = 5374.809584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.142 3.858 3 N -0.579 5.579 4 C -0.272 4.272 5 H 0.053 0.947 6 C -0.015 4.015 7 N -0.906 5.906 8 Si 0.941 3.059 9 H -0.276 1.276 10 H -0.285 1.285 11 H -0.273 1.273 12 C 0.211 3.789 13 C 0.104 3.896 14 N -0.500 5.500 15 C 0.062 3.938 16 C -0.091 4.091 17 C -0.070 4.070 18 C -0.107 4.107 19 C -0.104 4.104 20 C -0.074 4.074 21 C -0.220 4.220 22 S 0.073 5.927 23 H 0.031 0.969 24 H 0.067 0.933 25 H 0.039 0.961 26 H 0.046 0.954 27 H 0.048 0.952 28 H 0.259 0.741 29 H 0.095 0.905 30 H 0.061 0.939 31 H 0.135 0.865 32 H 0.083 0.917 33 H 0.073 0.927 34 H 0.090 0.910 35 H 0.171 0.829 36 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.787 3.519 9.869 17.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.017 3.983 3 N -0.299 5.299 4 C -0.402 4.402 5 H 0.071 0.929 6 C -0.215 4.215 7 N -0.548 5.548 8 Si 0.768 3.232 9 H -0.201 1.201 10 H -0.210 1.210 11 H -0.198 1.198 12 C 0.080 3.920 13 C -0.183 4.183 14 N -0.216 5.216 15 C -0.059 4.059 16 C -0.112 4.112 17 C -0.073 4.073 18 C -0.164 4.164 19 C -0.125 4.125 20 C -0.097 4.097 21 C -0.339 4.339 22 S 0.329 5.671 23 H 0.050 0.950 24 H 0.086 0.914 25 H 0.058 0.942 26 H 0.064 0.936 27 H 0.066 0.934 28 H 0.069 0.931 29 H 0.113 0.887 30 H 0.079 0.921 31 H 0.153 0.847 32 H 0.102 0.898 33 H 0.092 0.908 34 H 0.109 0.891 35 H 0.188 0.812 36 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -12.969 3.743 9.337 16.413 hybrid contribution -0.106 0.254 -0.438 0.518 sum -13.075 3.998 8.899 16.313 Atomic orbital electron populations 1.22136 0.98362 1.00682 1.00120 1.20988 0.92886 0.85074 0.99364 1.43886 1.75513 1.09342 1.01164 1.19081 1.04661 1.22472 0.93963 0.92919 1.25724 0.93638 1.02337 0.99782 1.70042 1.03537 1.37730 1.43506 0.85756 0.77271 0.80213 0.80005 1.20128 1.20997 1.19834 1.19713 0.89193 0.96680 0.86401 1.28653 1.01574 0.94097 0.93936 1.66304 1.04168 1.36192 1.14888 1.19734 0.95810 0.89581 1.00742 1.20418 0.92329 1.00964 0.97537 1.19849 0.96350 0.93208 0.97922 1.20861 0.94860 1.03296 0.97358 1.21394 0.98072 0.96667 0.96410 1.20677 0.92320 0.98420 0.98280 1.24231 1.03316 1.00512 1.05865 1.84101 1.20033 1.15568 1.47369 0.95016 0.91435 0.94210 0.93571 0.93357 0.93141 0.88711 0.92128 0.84745 0.89842 0.90835 0.89117 0.81171 0.83754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.11 10.21 71.98 0.73 -5.38 16 2 C 0.14 6.21 6.44 86.38 0.56 6.76 16 3 N -0.58 -29.04 2.42 -706.35 -1.71 -30.75 16 4 C -0.27 -14.59 9.45 84.03 0.79 -13.80 16 5 H 0.05 2.89 7.92 -2.91 -0.02 2.87 16 6 C -0.02 -0.83 4.95 84.86 0.42 -0.41 16 7 N -0.91 -50.33 11.47 21.65 0.25 -50.09 16 8 Si 0.94 43.05 29.61 68.60 2.03 45.08 16 9 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 10 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 11 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 12 C 0.21 10.23 5.89 85.64 0.50 10.73 16 13 C 0.10 4.70 6.74 88.68 0.60 5.30 16 14 N -0.50 -21.65 9.55 -182.51 -1.74 -23.39 16 15 C 0.06 2.37 7.00 39.78 0.28 2.65 16 16 C -0.09 -2.73 9.66 22.46 0.22 -2.51 16 17 C -0.07 -1.57 5.83 -20.21 -0.12 -1.69 16 18 C -0.11 -1.44 9.98 71.24 0.71 -0.73 16 19 C -0.10 -2.21 9.68 22.27 0.22 -1.99 16 20 C -0.07 -2.05 10.07 22.39 0.23 -1.83 16 21 C -0.22 -8.05 6.56 22.94 0.15 -7.90 16 22 S 0.07 3.03 23.11 -56.49 -1.31 1.72 16 23 H 0.03 1.31 8.14 -2.38 -0.02 1.29 16 24 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 25 H 0.04 1.68 6.96 -2.38 -0.02 1.66 16 26 H 0.05 2.01 8.08 -2.39 -0.02 1.99 16 27 H 0.05 2.00 7.83 -2.39 -0.02 1.98 16 28 H 0.26 13.88 8.31 -92.71 -0.77 13.11 16 29 H 0.10 5.03 5.52 -2.39 -0.01 5.02 16 30 H 0.06 2.86 7.86 -2.39 -0.02 2.84 16 31 H 0.13 3.65 8.06 -2.91 -0.02 3.63 16 32 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.07 0.93 8.07 -2.39 -0.02 0.91 16 34 H 0.09 0.84 8.08 -2.38 -0.02 0.82 16 35 H 0.17 2.15 8.06 -2.91 -0.02 2.13 16 36 H 0.14 3.29 8.06 -2.91 -0.02 3.26 16 Total: -1.00 -62.79 317.16 3.88 -58.90 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: 1.07 Total: 9.31 kcal Atomic # 6 Polarization: -16.08 SS G_CDS: 5.29 Total: -10.79 kcal Atomic # 7 Polarization: -101.02 SS G_CDS: -3.20 Total: -104.23 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.08 kcal Atomic # 16 Polarization: 3.03 SS G_CDS: -1.31 Total: 1.72 kcal Total: -62.79 3.88 -58.90 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000528364352.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.550 kcal (2) G-P(sol) polarization free energy of solvation -62.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.905 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds