Wall clock time and date at job start Mon Mar 30 2020 01:35:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81407 * 1 3 3 C 1.76200 * 103.00053 * 2 1 4 4 C 1.39060 * 120.04018 * 0.02562 * 3 2 1 5 5 C 1.38113 * 120.06680 * 179.97438 * 4 3 2 6 6 C 1.38191 * 120.15288 * 359.68940 * 5 4 3 7 7 C 1.38972 * 120.08170 * 0.58700 * 6 5 4 8 8 N 1.39678 * 120.02858 * 179.70110 * 7 6 5 9 9 C 1.46500 * 120.00264 * 359.72965 * 8 7 6 10 10 C 1.52996 * 109.46949 * 179.97438 * 9 8 7 11 11 H 1.09000 * 109.47753 * 305.00252 * 10 9 8 12 12 C 1.47204 * 109.47042 * 65.00020 * 10 9 8 13 13 N 8.01147 * 140.62208 * 333.99624 * 2 1 3 14 14 C 1.52996 * 109.47153 * 184.99976 * 10 9 8 15 15 C 1.50702 * 109.47159 * 175.00123 * 14 10 9 16 16 H 1.08002 * 120.00299 * 0.02562 * 15 14 10 17 17 C 1.37884 * 119.99942 * 179.72211 * 15 14 10 18 18 N 1.31514 * 119.99698 * 0.28408 * 17 15 14 19 19 Si 1.86794 * 119.99837 * 180.27476 * 17 15 14 20 20 H 1.48504 * 109.47196 * 60.00645 * 19 17 15 21 21 H 1.48504 * 109.46887 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47679 * 300.00280 * 19 17 15 23 23 C 1.38766 * 119.93300 * 359.43203 * 7 6 5 24 24 H 1.08988 * 109.46968 * 59.99964 * 1 2 3 25 25 H 1.09001 * 109.46843 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.46726 * 299.99610 * 1 2 3 27 27 H 1.07999 * 119.96747 * 359.97438 * 4 3 2 28 28 H 1.07998 * 119.91989 * 180.02562 * 5 4 3 29 29 H 1.08002 * 119.95959 * 180.31826 * 6 5 4 30 30 H 0.97002 * 119.99131 * 179.73046 * 8 7 6 31 31 H 1.08997 * 109.46786 * 59.99855 * 9 8 7 32 32 H 1.08996 * 109.47381 * 300.00053 * 9 8 7 33 33 H 1.09004 * 109.47066 * 55.00326 * 14 10 9 34 34 H 1.08994 * 109.47405 * 295.00156 * 14 10 9 35 35 H 0.97005 * 119.99651 * 179.97438 * 18 17 15 36 36 H 1.08003 * 120.07690 * 180.24565 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 1.1941 2.6659 0.0005 5 6 1.5042 4.0118 0.0011 6 6 2.8244 4.4200 0.0076 7 6 3.8451 3.4769 0.0012 8 7 5.1792 3.8907 0.0015 9 6 5.5030 5.3195 0.0024 10 6 7.0225 5.4980 0.0032 11 1 7.4519 4.9545 0.8448 12 6 7.5788 4.9734 -1.2547 13 7 8.0068 4.5682 -2.2284 14 6 7.3613 6.9846 0.1299 15 6 8.8539 7.1508 0.2541 16 1 9.4967 6.2830 0.2433 17 6 9.3995 8.4114 0.3752 18 7 8.6168 9.4681 0.3880 19 14 11.2502 8.6179 0.5214 20 1 11.9079 8.0570 -0.6861 21 1 11.5794 10.0612 0.6396 22 1 11.7348 7.8998 1.7276 23 6 3.5376 2.1237 0.0003 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 0.1613 2.3503 0.0005 28 1 0.7130 4.7469 0.0019 29 1 3.0633 5.4732 0.0131 30 1 5.8912 3.2320 0.0010 31 1 5.0821 5.7867 0.8927 32 1 5.0822 5.7880 -0.8872 33 1 6.8752 7.3938 1.0155 34 1 7.0091 7.5142 -0.7553 35 1 9.0006 10.3549 0.4736 36 1 4.3290 1.3888 -0.0006 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000554476166.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:43 Heat of formation + Delta-G solvation = 37.647495 kcal Electronic energy + Delta-G solvation = -17620.728133 eV Core-core repulsion = 14809.380748 eV Total energy + Delta-G solvation = -2811.347385 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 276.099 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.40669 -37.23047 -35.12249 -33.67590 -31.95428 -30.97755 -29.90365 -28.53580 -26.46809 -24.06065 -22.61887 -21.84961 -21.53094 -17.97172 -17.19930 -16.59916 -16.25977 -16.01424 -15.27301 -14.63010 -14.45705 -14.20970 -14.06472 -13.82196 -13.55634 -13.21932 -13.10078 -12.71303 -12.62405 -12.24033 -12.03181 -11.60671 -11.47387 -11.38301 -11.15890 -10.83368 -10.65612 -10.47153 -10.33589 -10.23066 -9.71740 -9.54711 -9.36332 -8.52697 -7.66498 -7.32580 -6.17163 -4.21211 1.27845 1.36706 1.56869 2.25168 3.26438 3.31237 3.33697 3.41103 3.46334 3.58390 3.80493 4.34698 4.61970 4.78070 4.78757 4.85983 5.06671 5.20646 5.21810 5.24778 5.36705 5.49633 5.54765 5.61112 5.81267 5.92480 6.15842 6.21896 6.29478 6.34357 6.50546 6.71737 7.30500 7.36244 7.39880 7.74963 7.76717 8.12511 8.28258 8.82512 9.44830 10.93569 Molecular weight = 276.10amu Principal moments of inertia in cm(-1) A = 0.040330 B = 0.002967 C = 0.002845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.100920 B = 9433.569298 C = 9839.573247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 S -0.128 6.128 3 C -0.037 4.037 4 C -0.200 4.200 5 C -0.053 4.053 6 C -0.200 4.200 7 C 0.242 3.758 8 N -0.744 5.744 9 C 0.130 3.870 10 C -0.002 4.002 11 H 0.108 0.892 12 C 0.236 3.764 13 N -0.466 5.466 14 C 0.034 3.966 15 C -0.531 4.531 16 H 0.056 0.944 17 C 0.064 3.936 18 N -0.890 5.890 19 Si 0.893 3.107 20 H -0.277 1.277 21 H -0.286 1.286 22 H -0.275 1.275 23 C -0.181 4.181 24 H 0.083 0.917 25 H 0.104 0.896 26 H 0.084 0.916 27 H 0.116 0.884 28 H 0.123 0.877 29 H 0.128 0.872 30 H 0.400 0.600 31 H 0.082 0.918 32 H 0.067 0.933 33 H 0.042 0.958 34 H 0.029 0.971 35 H 0.264 0.736 36 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.144 -13.559 2.428 21.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.310 4.310 2 S 0.114 5.886 3 C -0.150 4.150 4 C -0.225 4.225 5 C -0.074 4.074 6 C -0.225 4.225 7 C 0.135 3.865 8 N -0.372 5.372 9 C 0.005 3.995 10 C -0.024 4.024 11 H 0.126 0.874 12 C -0.081 4.081 13 N -0.142 5.142 14 C -0.004 4.004 15 C -0.569 4.569 16 H 0.075 0.925 17 C -0.139 4.139 18 N -0.528 5.528 19 Si 0.720 3.280 20 H -0.202 1.202 21 H -0.211 1.211 22 H -0.200 1.200 23 C -0.210 4.210 24 H 0.102 0.898 25 H 0.123 0.877 26 H 0.103 0.897 27 H 0.134 0.866 28 H 0.141 0.859 29 H 0.146 0.854 30 H 0.234 0.766 31 H 0.100 0.900 32 H 0.085 0.915 33 H 0.060 0.940 34 H 0.047 0.953 35 H 0.074 0.926 36 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -15.814 -14.812 0.968 21.690 hybrid contribution 0.406 1.308 0.414 1.431 sum -15.408 -13.504 1.382 20.535 Atomic orbital electron populations 1.23633 0.94944 1.06733 1.05713 1.85456 1.06259 1.04164 1.92756 1.21296 0.95982 0.95626 1.02106 1.20816 0.97549 0.93158 1.11018 1.20757 0.95836 0.94966 0.95798 1.20764 0.91939 0.99161 1.10591 1.17665 0.84945 0.92048 0.91857 1.44948 1.03661 1.07435 1.81106 1.21572 0.94516 0.80810 1.02597 1.19479 0.91946 1.02540 0.88442 0.87378 1.29201 0.92586 0.91755 0.94525 1.81145 1.09722 1.11359 1.11996 1.19151 0.97662 0.84573 0.99027 1.21062 0.91513 0.92688 1.51626 0.92529 1.24946 0.98218 0.95915 0.94785 1.69921 1.35117 0.98335 1.49432 0.86632 0.85378 0.77126 0.78824 1.20226 1.21110 1.19997 1.20060 0.94724 0.94026 1.12146 0.89772 0.87710 0.89748 0.86583 0.85950 0.85421 0.76564 0.89980 0.91478 0.93953 0.95306 0.92606 0.85929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.95 9.15 101.05 0.92 -0.02 16 2 S -0.13 -1.32 22.56 -107.50 -2.43 -3.75 16 3 C -0.04 -0.44 6.11 -39.06 -0.24 -0.68 16 4 C -0.20 -2.19 9.36 -39.32 -0.37 -2.56 16 5 C -0.05 -0.58 10.03 -39.64 -0.40 -0.98 16 6 C -0.20 -2.44 9.31 -39.33 -0.37 -2.81 16 7 C 0.24 3.16 6.65 -83.82 -0.56 2.60 16 8 N -0.74 -9.63 5.52 -58.66 -0.32 -9.95 16 9 C 0.13 1.79 4.27 -4.04 -0.02 1.77 16 10 C 0.00 -0.03 2.26 -93.41 -0.21 -0.25 16 11 H 0.11 1.68 8.14 -51.93 -0.42 1.25 16 12 C 0.24 4.59 13.46 -20.69 -0.28 4.31 16 13 N -0.47 -9.97 18.55 42.24 0.78 -9.19 16 14 C 0.03 0.75 4.42 -27.88 -0.12 0.63 16 15 C -0.53 -13.64 8.60 -34.44 -0.30 -13.93 16 16 H 0.06 1.44 7.59 -52.49 -0.40 1.04 16 17 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 18 N -0.89 -24.84 13.29 55.43 0.74 -24.11 16 19 Si 0.89 20.87 29.54 -169.99 -5.02 15.85 16 20 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 21 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 22 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 23 C -0.18 -2.32 9.64 -39.17 -0.38 -2.70 16 24 H 0.08 0.52 7.75 -51.93 -0.40 0.12 16 25 H 0.10 0.52 8.14 -51.92 -0.42 0.10 16 26 H 0.08 0.51 7.75 -51.92 -0.40 0.11 16 27 H 0.12 1.02 5.87 -52.49 -0.31 0.72 16 28 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 29 H 0.13 1.45 6.72 -52.49 -0.35 1.10 16 30 H 0.40 4.94 8.23 -40.82 -0.34 4.61 16 31 H 0.08 1.03 7.94 -51.93 -0.41 0.62 16 32 H 0.07 0.95 7.96 -51.93 -0.41 0.53 16 33 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 36 H 0.12 1.49 8.06 -52.48 -0.42 1.07 16 LS Contribution 326.28 15.07 4.92 4.92 Total: -1.00 -29.65 326.28 -8.43 -38.08 By element: Atomic # 1 Polarization: 5.85 SS G_CDS: -4.70 Total: 1.16 kcal Atomic # 6 Polarization: -10.60 SS G_CDS: -2.40 Total: -13.00 kcal Atomic # 7 Polarization: -44.45 SS G_CDS: 1.20 Total: -43.25 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Atomic # 16 Polarization: -1.32 SS G_CDS: -2.43 Total: -3.75 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -29.65 -8.43 -38.08 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000554476166.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.731 kcal (2) G-P(sol) polarization free energy of solvation -29.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.083 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds