Wall clock time and date at job start Mon Mar 30 2020 01:35:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81407 * 1 3 3 C 1.76200 * 103.00053 * 2 1 4 4 C 1.39060 * 120.04018 * 0.02562 * 3 2 1 5 5 C 1.38113 * 120.06680 * 179.97438 * 4 3 2 6 6 C 1.38191 * 120.15288 * 359.68940 * 5 4 3 7 7 C 1.38972 * 120.08170 * 0.58700 * 6 5 4 8 8 N 1.39678 * 120.02858 * 179.70110 * 7 6 5 9 9 C 1.46500 * 120.00264 * 359.72965 * 8 7 6 10 10 C 1.52996 * 109.46949 * 179.97438 * 9 8 7 11 11 H 1.09000 * 109.47753 * 305.00252 * 10 9 8 12 12 C 1.47204 * 109.47042 * 65.00020 * 10 9 8 13 13 N 8.01147 * 140.62208 * 333.99624 * 2 1 3 14 14 C 1.52996 * 109.47153 * 184.99976 * 10 9 8 15 15 C 1.50702 * 109.47159 * 175.00123 * 14 10 9 16 16 H 1.08002 * 120.00299 * 0.02562 * 15 14 10 17 17 C 1.37884 * 119.99942 * 179.72211 * 15 14 10 18 18 N 1.31514 * 119.99698 * 0.28408 * 17 15 14 19 19 Si 1.86794 * 119.99837 * 180.27476 * 17 15 14 20 20 H 1.48504 * 109.47196 * 60.00645 * 19 17 15 21 21 H 1.48504 * 109.46887 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47679 * 300.00280 * 19 17 15 23 23 C 1.38766 * 119.93300 * 359.43203 * 7 6 5 24 24 H 1.08988 * 109.46968 * 59.99964 * 1 2 3 25 25 H 1.09001 * 109.46843 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.46726 * 299.99610 * 1 2 3 27 27 H 1.07999 * 119.96747 * 359.97438 * 4 3 2 28 28 H 1.07998 * 119.91989 * 180.02562 * 5 4 3 29 29 H 1.08002 * 119.95959 * 180.31826 * 6 5 4 30 30 H 0.97002 * 119.99131 * 179.73046 * 8 7 6 31 31 H 1.08997 * 109.46786 * 59.99855 * 9 8 7 32 32 H 1.08996 * 109.47381 * 300.00053 * 9 8 7 33 33 H 1.09004 * 109.47066 * 55.00326 * 14 10 9 34 34 H 1.08994 * 109.47405 * 295.00156 * 14 10 9 35 35 H 0.97005 * 119.99651 * 179.97438 * 18 17 15 36 36 H 1.08003 * 120.07690 * 180.24565 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 1.1941 2.6659 0.0005 5 6 1.5042 4.0118 0.0011 6 6 2.8244 4.4200 0.0076 7 6 3.8451 3.4769 0.0012 8 7 5.1792 3.8907 0.0015 9 6 5.5030 5.3195 0.0024 10 6 7.0225 5.4980 0.0032 11 1 7.4519 4.9545 0.8448 12 6 7.5788 4.9734 -1.2547 13 7 8.0068 4.5682 -2.2284 14 6 7.3613 6.9846 0.1299 15 6 8.8539 7.1508 0.2541 16 1 9.4967 6.2830 0.2433 17 6 9.3995 8.4114 0.3752 18 7 8.6168 9.4681 0.3880 19 14 11.2502 8.6179 0.5214 20 1 11.9079 8.0570 -0.6861 21 1 11.5794 10.0612 0.6396 22 1 11.7348 7.8998 1.7276 23 6 3.5376 2.1237 0.0003 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 0.1613 2.3503 0.0005 28 1 0.7130 4.7469 0.0019 29 1 3.0633 5.4732 0.0131 30 1 5.8912 3.2320 0.0010 31 1 5.0821 5.7867 0.8927 32 1 5.0822 5.7880 -0.8872 33 1 6.8752 7.3938 1.0155 34 1 7.0091 7.5142 -0.7553 35 1 9.0006 10.3549 0.4736 36 1 4.3290 1.3888 -0.0006 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000554476166.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:43 Heat of formation + Delta-G solvation = 22.014097 kcal Electronic energy + Delta-G solvation = -17621.406048 eV Core-core repulsion = 14809.380748 eV Total energy + Delta-G solvation = -2812.025300 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 276.099 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.34994 -38.60928 -36.42040 -35.40720 -33.55462 -31.85828 -30.80097 -29.44952 -27.94348 -25.34966 -23.96039 -23.19524 -22.50864 -18.91781 -18.69226 -18.30976 -17.14689 -17.09211 -16.66626 -16.10523 -15.51794 -15.13550 -15.00417 -14.73562 -14.61279 -14.38564 -14.33949 -14.17980 -13.85993 -13.48597 -13.35545 -13.13929 -12.92567 -12.57241 -12.49484 -12.38863 -12.23328 -12.03210 -11.50297 -11.27133 -11.19540 -11.09287 -10.55727 -10.40785 -8.54946 -8.22059 -8.20736 -6.28763 0.38069 0.63590 0.67696 1.41027 1.42588 1.49251 1.55499 1.87429 1.90243 2.38640 2.51423 2.90370 3.12219 3.17786 3.92080 4.03794 4.25856 4.27809 4.31750 4.33101 4.37998 4.56819 4.67308 4.72901 4.83626 4.87460 4.89974 4.99804 5.32698 5.42697 5.45265 5.58975 5.63237 5.76778 5.83393 6.16147 6.39586 6.68460 6.77560 6.85898 7.39883 8.89877 Molecular weight = 276.10amu Principal moments of inertia in cm(-1) A = 0.040330 B = 0.002967 C = 0.002845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.100920 B = 9433.569298 C = 9839.573247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 S -0.161 6.161 3 C -0.047 4.047 4 C -0.201 4.201 5 C -0.054 4.054 6 C -0.213 4.213 7 C 0.228 3.772 8 N -0.745 5.745 9 C 0.143 3.857 10 C 0.011 3.989 11 H 0.129 0.871 12 C 0.249 3.751 13 N -0.502 5.502 14 C 0.040 3.960 15 C -0.541 4.541 16 H 0.055 0.945 17 C 0.013 3.987 18 N -0.921 5.921 19 Si 0.947 3.053 20 H -0.282 1.282 21 H -0.283 1.283 22 H -0.263 1.263 23 C -0.198 4.198 24 H 0.092 0.908 25 H 0.124 0.876 26 H 0.094 0.906 27 H 0.140 0.860 28 H 0.149 0.851 29 H 0.133 0.867 30 H 0.401 0.599 31 H 0.099 0.901 32 H 0.063 0.937 33 H 0.043 0.957 34 H 0.005 0.995 35 H 0.265 0.735 36 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.548 -14.288 3.101 23.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.300 4.300 2 S 0.081 5.919 3 C -0.160 4.160 4 C -0.226 4.226 5 C -0.074 4.074 6 C -0.238 4.238 7 C 0.122 3.878 8 N -0.374 5.374 9 C 0.018 3.982 10 C -0.010 4.010 11 H 0.147 0.853 12 C -0.067 4.067 13 N -0.179 5.179 14 C 0.001 3.999 15 C -0.580 4.580 16 H 0.073 0.927 17 C -0.186 4.186 18 N -0.561 5.561 19 Si 0.772 3.228 20 H -0.208 1.208 21 H -0.208 1.208 22 H -0.188 1.188 23 C -0.226 4.226 24 H 0.111 0.889 25 H 0.142 0.858 26 H 0.113 0.887 27 H 0.157 0.843 28 H 0.166 0.834 29 H 0.151 0.849 30 H 0.236 0.764 31 H 0.117 0.883 32 H 0.081 0.919 33 H 0.061 0.939 34 H 0.024 0.976 35 H 0.073 0.927 36 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -17.227 -15.565 1.648 23.276 hybrid contribution 0.741 1.471 0.196 1.659 sum -16.487 -14.094 1.844 21.768 Atomic orbital electron populations 1.23744 0.91352 1.08320 1.06590 1.85561 1.10264 1.03479 1.92617 1.21512 0.95996 0.96671 1.01821 1.21155 0.98484 0.93044 1.09921 1.21102 0.96007 0.95655 0.94650 1.20979 0.92484 0.99369 1.10930 1.17793 0.84922 0.92412 0.92666 1.44799 1.03958 1.06841 1.81787 1.21368 0.91877 0.81652 1.03291 1.19395 0.94257 0.99418 0.87972 0.85306 1.29647 0.91615 0.90911 0.94530 1.81148 1.11061 1.12534 1.13184 1.18965 0.95594 0.87518 0.97834 1.21509 0.93564 0.92507 1.50377 0.92695 1.25679 1.01933 0.96013 0.94995 1.70012 1.36592 0.98635 1.50852 0.85779 0.81028 0.77166 0.78780 1.20801 1.20794 1.18791 1.20173 0.95357 0.94052 1.13035 0.88926 0.85793 0.88741 0.84277 0.83353 0.84868 0.76406 0.88299 0.91870 0.93905 0.97612 0.92654 0.86215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.40 9.15 113.37 1.04 -0.37 16 2 S -0.16 -3.14 22.56 -56.49 -1.27 -4.41 16 3 C -0.05 -1.07 6.11 22.60 0.14 -0.94 16 4 C -0.20 -3.96 9.36 22.44 0.21 -3.75 16 5 C -0.05 -1.06 10.03 22.23 0.22 -0.83 16 6 C -0.21 -4.90 9.31 22.43 0.21 -4.69 16 7 C 0.23 5.77 6.65 38.19 0.25 6.02 16 8 N -0.74 -18.66 5.52 -339.50 -1.87 -20.53 16 9 C 0.14 3.78 4.27 86.38 0.37 4.15 16 10 C 0.01 0.37 2.26 -12.60 -0.03 0.35 16 11 H 0.13 3.77 8.14 -2.39 -0.02 3.75 16 12 C 0.25 9.58 13.46 89.42 1.20 10.78 16 13 N -0.50 -21.49 18.55 20.03 0.37 -21.12 16 14 C 0.04 1.72 4.42 29.85 0.13 1.86 16 15 C -0.54 -27.64 8.60 25.60 0.22 -27.42 16 16 H 0.05 2.76 7.59 -2.91 -0.02 2.74 16 17 C 0.01 0.70 5.46 84.66 0.46 1.17 16 18 N -0.92 -51.64 13.29 21.45 0.28 -51.36 16 19 Si 0.95 42.57 29.54 68.60 2.03 44.60 16 20 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 21 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 22 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 23 C -0.20 -5.00 9.64 22.53 0.22 -4.78 16 24 H 0.09 0.87 7.75 -2.40 -0.02 0.85 16 25 H 0.12 0.87 8.14 -2.39 -0.02 0.85 16 26 H 0.09 0.85 7.75 -2.39 -0.02 0.83 16 27 H 0.14 2.01 5.87 -2.91 -0.02 1.99 16 28 H 0.15 2.06 8.06 -2.91 -0.02 2.04 16 29 H 0.13 2.83 6.72 -2.91 -0.02 2.81 16 30 H 0.40 9.68 8.23 -92.71 -0.76 8.92 16 31 H 0.10 2.31 7.94 -2.39 -0.02 2.30 16 32 H 0.06 1.73 7.96 -2.39 -0.02 1.71 16 33 H 0.04 1.87 8.14 -2.38 -0.02 1.85 16 34 H 0.01 0.26 8.14 -2.39 -0.02 0.24 16 35 H 0.26 14.16 8.31 -92.70 -0.77 13.39 16 36 H 0.12 2.96 8.06 -2.91 -0.02 2.94 16 Total: -1.00 -63.05 326.28 4.51 -58.54 By element: Atomic # 1 Polarization: 12.41 SS G_CDS: 0.33 Total: 12.74 kcal Atomic # 6 Polarization: -23.10 SS G_CDS: 4.65 Total: -18.45 kcal Atomic # 7 Polarization: -91.79 SS G_CDS: -1.22 Total: -93.01 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 2.03 Total: 44.60 kcal Atomic # 16 Polarization: -3.14 SS G_CDS: -1.27 Total: -4.41 kcal Total: -63.05 4.51 -58.54 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000554476166.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.552 kcal (2) G-P(sol) polarization free energy of solvation -63.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.538 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds