Wall clock time and date at job start Mon Mar 30 2020 01:35:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81405 * 1 3 3 C 1.76197 * 102.99603 * 2 1 4 4 C 1.39055 * 120.04762 * 0.02562 * 3 2 1 5 5 C 1.38110 * 120.07320 * 179.97438 * 4 3 2 6 6 C 1.38199 * 120.14755 * 359.67636 * 5 4 3 7 7 C 1.38961 * 120.08695 * 0.59857 * 6 5 4 8 8 N 1.39670 * 120.03687 * 179.69594 * 7 6 5 9 9 C 1.46504 * 119.99811 * 359.72868 * 8 7 6 10 10 C 1.52994 * 109.47344 * 179.97438 * 9 8 7 11 11 H 1.09009 * 109.47154 * 54.99894 * 10 9 8 12 12 C 1.47200 * 109.47451 * 294.99956 * 10 9 8 13 13 N 8.01121 * 140.63145 * 26.01534 * 2 1 3 14 14 C 1.52996 * 109.47347 * 174.99738 * 10 9 8 15 15 C 1.50702 * 109.47159 * 185.00014 * 14 10 9 16 16 H 1.08002 * 120.00299 * 0.02562 * 15 14 10 17 17 C 1.37884 * 119.99942 * 179.72211 * 15 14 10 18 18 N 1.31514 * 119.99698 * 0.28408 * 17 15 14 19 19 Si 1.86794 * 119.99837 * 180.27476 * 17 15 14 20 20 H 1.48496 * 109.47341 * 0.02562 * 19 17 15 21 21 H 1.48508 * 109.46983 * 120.00379 * 19 17 15 22 22 H 1.48503 * 109.47491 * 240.00192 * 19 17 15 23 23 C 1.38770 * 119.93118 * 359.42513 * 7 6 5 24 24 H 1.08992 * 109.47381 * 299.99779 * 1 2 3 25 25 H 1.08996 * 109.47135 * 60.00303 * 1 2 3 26 26 H 1.09005 * 109.46643 * 179.97438 * 1 2 3 27 27 H 1.08006 * 119.96370 * 359.97438 * 4 3 2 28 28 H 1.07996 * 119.92634 * 179.97438 * 5 4 3 29 29 H 1.08001 * 119.95156 * 180.31784 * 6 5 4 30 30 H 0.96994 * 120.00532 * 179.72171 * 8 7 6 31 31 H 1.08998 * 109.47354 * 59.99583 * 9 8 7 32 32 H 1.09002 * 109.47318 * 299.99805 * 9 8 7 33 33 H 1.09004 * 109.47066 * 65.00217 * 14 10 9 34 34 H 1.08994 * 109.47405 * 305.00047 * 14 10 9 35 35 H 0.97005 * 119.99651 * 179.97438 * 18 17 15 36 36 H 1.08002 * 120.08064 * 180.25717 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7168 0.0000 4 6 1.1940 2.6660 0.0005 5 6 1.5040 4.0118 0.0011 6 6 2.8243 4.4200 0.0078 7 6 3.8450 3.4770 0.0015 8 7 5.1791 3.8907 0.0020 9 6 5.5029 5.3195 0.0030 10 6 7.0223 5.4981 0.0039 11 1 7.4525 4.9556 -0.8381 12 6 7.5775 4.9722 1.2617 13 7 8.0074 4.5667 2.2288 14 6 7.3612 6.9849 -0.1208 15 6 8.8540 7.1513 -0.2434 16 1 9.4967 6.2834 -0.2338 17 6 9.3988 8.4112 -0.3741 18 7 8.6160 9.4680 -0.3861 19 14 11.2484 8.6169 -0.5338 20 1 11.9003 7.2833 -0.4926 21 1 11.5630 9.2815 -1.8241 22 1 11.7527 9.4496 0.5877 23 6 3.5375 2.1238 0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 0.1611 2.3503 0.0005 28 1 0.7129 4.7469 0.0011 29 1 3.0631 5.4732 0.0134 30 1 5.8911 3.2321 0.0017 31 1 5.0819 5.7868 0.8932 32 1 5.0822 5.7881 -0.8867 33 1 7.0082 7.5135 0.7648 34 1 6.8760 7.3951 -1.0063 35 1 8.9993 10.3544 -0.4777 36 1 4.3289 1.3889 -0.0001 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000554476176.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:45 Heat of formation + Delta-G solvation = 38.020408 kcal Electronic energy + Delta-G solvation = -17622.064521 eV Core-core repulsion = 14810.733307 eV Total energy + Delta-G solvation = -2811.331214 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 276.099 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.40772 -37.26221 -35.17663 -33.69394 -31.95938 -30.97697 -29.90386 -28.53618 -26.47001 -24.06070 -22.62030 -21.84839 -21.53131 -17.97219 -17.19784 -16.60185 -16.25966 -16.01691 -15.27516 -14.62843 -14.45622 -14.21203 -14.06418 -13.81694 -13.55667 -13.22832 -13.11895 -12.71864 -12.63408 -12.25620 -12.04075 -11.61044 -11.47830 -11.38779 -11.17544 -10.85229 -10.62358 -10.48350 -10.33657 -10.23118 -9.72726 -9.54675 -9.33494 -8.53668 -7.66482 -7.32597 -6.17653 -4.21463 1.27816 1.36716 1.56877 2.25144 3.23649 3.32243 3.35482 3.42871 3.48699 3.59849 3.80482 4.34539 4.62768 4.78041 4.78736 4.86007 5.06636 5.20418 5.22046 5.24757 5.36690 5.49711 5.54842 5.61174 5.81288 5.92679 6.15869 6.21946 6.29560 6.34415 6.50533 6.71751 7.30673 7.36277 7.39748 7.75018 7.76810 8.12308 8.28403 8.82798 9.44717 10.93173 Molecular weight = 276.10amu Principal moments of inertia in cm(-1) A = 0.040284 B = 0.002968 C = 0.002846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.898271 B = 9433.045898 C = 9837.510293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 S -0.128 6.128 3 C -0.037 4.037 4 C -0.200 4.200 5 C -0.053 4.053 6 C -0.200 4.200 7 C 0.242 3.758 8 N -0.744 5.744 9 C 0.130 3.870 10 C -0.003 4.003 11 H 0.108 0.892 12 C 0.237 3.763 13 N -0.465 5.465 14 C 0.034 3.966 15 C -0.529 4.529 16 H 0.058 0.942 17 C 0.063 3.937 18 N -0.890 5.890 19 Si 0.893 3.107 20 H -0.272 1.272 21 H -0.282 1.282 22 H -0.283 1.283 23 C -0.181 4.181 24 H 0.083 0.917 25 H 0.084 0.916 26 H 0.104 0.896 27 H 0.116 0.884 28 H 0.123 0.877 29 H 0.128 0.872 30 H 0.400 0.600 31 H 0.067 0.933 32 H 0.082 0.918 33 H 0.029 0.971 34 H 0.042 0.958 35 H 0.263 0.737 36 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.144 -13.592 -2.405 22.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.310 4.310 2 S 0.114 5.886 3 C -0.150 4.150 4 C -0.225 4.225 5 C -0.074 4.074 6 C -0.225 4.225 7 C 0.135 3.865 8 N -0.371 5.371 9 C 0.005 3.995 10 C -0.025 4.025 11 H 0.126 0.874 12 C -0.080 4.080 13 N -0.142 5.142 14 C -0.005 4.005 15 C -0.567 4.567 16 H 0.076 0.924 17 C -0.139 4.139 18 N -0.528 5.528 19 Si 0.720 3.280 20 H -0.197 1.197 21 H -0.208 1.208 22 H -0.209 1.209 23 C -0.210 4.210 24 H 0.102 0.898 25 H 0.103 0.897 26 H 0.123 0.877 27 H 0.134 0.866 28 H 0.141 0.859 29 H 0.146 0.854 30 H 0.234 0.766 31 H 0.085 0.915 32 H 0.100 0.900 33 H 0.047 0.953 34 H 0.060 0.940 35 H 0.073 0.927 36 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -15.809 -14.857 -0.956 21.715 hybrid contribution 0.392 1.333 -0.436 1.457 sum -15.417 -13.523 -1.392 20.555 Atomic orbital electron populations 1.23633 0.94946 1.06733 1.05714 1.85456 1.06257 1.04160 1.92755 1.21297 0.95982 0.95627 1.02109 1.20814 0.97550 0.93159 1.11014 1.20758 0.95834 0.94965 0.95799 1.20763 0.91941 0.99162 1.10591 1.17660 0.84945 0.92048 0.91859 1.44945 1.03659 1.07438 1.81103 1.21572 0.94530 0.80807 1.02589 1.19478 0.91979 1.02532 0.88503 0.87398 1.28988 0.92644 0.91818 0.94531 1.80939 1.09640 1.11311 1.12263 1.19160 0.97699 0.84588 0.99041 1.21137 0.91535 0.92757 1.51296 0.92425 1.24952 0.98227 0.95931 0.94817 1.69941 1.34952 0.98310 1.49593 0.86517 0.85352 0.78330 0.77777 1.19693 1.20764 1.20912 1.20064 0.94722 0.94026 1.12146 0.89772 0.89748 0.87711 0.86584 0.85949 0.85425 0.76566 0.91488 0.89988 0.95300 0.93952 0.92723 0.85930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.95 9.15 101.05 0.92 -0.02 16 2 S -0.13 -1.32 22.56 -107.50 -2.43 -3.75 16 3 C -0.04 -0.44 6.11 -39.06 -0.24 -0.68 16 4 C -0.20 -2.19 9.36 -39.33 -0.37 -2.56 16 5 C -0.05 -0.58 10.03 -39.64 -0.40 -0.98 16 6 C -0.20 -2.45 9.31 -39.33 -0.37 -2.81 16 7 C 0.24 3.16 6.65 -83.82 -0.56 2.60 16 8 N -0.74 -9.63 5.52 -58.66 -0.32 -9.95 16 9 C 0.13 1.79 4.27 -4.04 -0.02 1.77 16 10 C 0.00 -0.05 2.26 -93.41 -0.21 -0.26 16 11 H 0.11 1.68 8.14 -51.92 -0.42 1.25 16 12 C 0.24 4.60 13.44 -20.85 -0.28 4.32 16 13 N -0.47 -9.94 18.52 42.05 0.78 -9.16 16 14 C 0.03 0.74 4.42 -27.88 -0.12 0.61 16 15 C -0.53 -13.59 8.60 -34.44 -0.30 -13.89 16 16 H 0.06 1.48 7.59 -52.49 -0.40 1.08 16 17 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 18 N -0.89 -24.83 13.29 55.43 0.74 -24.10 16 19 Si 0.89 20.87 29.54 -169.99 -5.02 15.85 16 20 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 21 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 22 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 23 C -0.18 -2.32 9.64 -39.17 -0.38 -2.70 16 24 H 0.08 0.52 7.74 -51.93 -0.40 0.12 16 25 H 0.08 0.51 7.75 -51.93 -0.40 0.11 16 26 H 0.10 0.52 8.14 -51.92 -0.42 0.10 16 27 H 0.12 1.02 5.87 -52.48 -0.31 0.72 16 28 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 29 H 0.13 1.46 6.72 -52.49 -0.35 1.10 16 30 H 0.40 4.95 8.23 -40.82 -0.34 4.61 16 31 H 0.07 0.95 7.93 -51.93 -0.41 0.53 16 32 H 0.08 1.03 7.96 -51.93 -0.41 0.62 16 33 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 36 H 0.12 1.49 8.06 -52.49 -0.42 1.07 16 LS Contribution 326.24 15.07 4.92 4.92 Total: -1.00 -29.67 326.24 -8.44 -38.11 By element: Atomic # 1 Polarization: 5.79 SS G_CDS: -4.70 Total: 1.09 kcal Atomic # 6 Polarization: -10.59 SS G_CDS: -2.41 Total: -13.00 kcal Atomic # 7 Polarization: -44.40 SS G_CDS: 1.19 Total: -43.21 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Atomic # 16 Polarization: -1.32 SS G_CDS: -2.43 Total: -3.75 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -29.67 -8.44 -38.11 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000554476176.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.126 kcal (2) G-P(sol) polarization free energy of solvation -29.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.106 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds