Wall clock time and date at job start Mon Mar 30 2020 01:35:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81405 * 1 3 3 C 1.76197 * 102.99603 * 2 1 4 4 C 1.39055 * 120.04762 * 0.02562 * 3 2 1 5 5 C 1.38110 * 120.07320 * 179.97438 * 4 3 2 6 6 C 1.38199 * 120.14755 * 359.67636 * 5 4 3 7 7 C 1.38961 * 120.08695 * 0.59857 * 6 5 4 8 8 N 1.39670 * 120.03687 * 179.69594 * 7 6 5 9 9 C 1.46504 * 119.99811 * 359.72868 * 8 7 6 10 10 C 1.52994 * 109.47344 * 179.97438 * 9 8 7 11 11 H 1.09009 * 109.47154 * 54.99894 * 10 9 8 12 12 C 1.47200 * 109.47451 * 294.99956 * 10 9 8 13 13 N 8.01121 * 140.63145 * 26.01534 * 2 1 3 14 14 C 1.52996 * 109.47347 * 174.99738 * 10 9 8 15 15 C 1.50702 * 109.47159 * 185.00014 * 14 10 9 16 16 H 1.08002 * 120.00299 * 0.02562 * 15 14 10 17 17 C 1.37884 * 119.99942 * 179.72211 * 15 14 10 18 18 N 1.31514 * 119.99698 * 0.28408 * 17 15 14 19 19 Si 1.86794 * 119.99837 * 180.27476 * 17 15 14 20 20 H 1.48496 * 109.47341 * 0.02562 * 19 17 15 21 21 H 1.48508 * 109.46983 * 120.00379 * 19 17 15 22 22 H 1.48503 * 109.47491 * 240.00192 * 19 17 15 23 23 C 1.38770 * 119.93118 * 359.42513 * 7 6 5 24 24 H 1.08992 * 109.47381 * 299.99779 * 1 2 3 25 25 H 1.08996 * 109.47135 * 60.00303 * 1 2 3 26 26 H 1.09005 * 109.46643 * 179.97438 * 1 2 3 27 27 H 1.08006 * 119.96370 * 359.97438 * 4 3 2 28 28 H 1.07996 * 119.92634 * 179.97438 * 5 4 3 29 29 H 1.08001 * 119.95156 * 180.31784 * 6 5 4 30 30 H 0.96994 * 120.00532 * 179.72171 * 8 7 6 31 31 H 1.08998 * 109.47354 * 59.99583 * 9 8 7 32 32 H 1.09002 * 109.47318 * 299.99805 * 9 8 7 33 33 H 1.09004 * 109.47066 * 65.00217 * 14 10 9 34 34 H 1.08994 * 109.47405 * 305.00047 * 14 10 9 35 35 H 0.97005 * 119.99651 * 179.97438 * 18 17 15 36 36 H 1.08002 * 120.08064 * 180.25717 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7168 0.0000 4 6 1.1940 2.6660 0.0005 5 6 1.5040 4.0118 0.0011 6 6 2.8243 4.4200 0.0078 7 6 3.8450 3.4770 0.0015 8 7 5.1791 3.8907 0.0020 9 6 5.5029 5.3195 0.0030 10 6 7.0223 5.4981 0.0039 11 1 7.4525 4.9556 -0.8381 12 6 7.5775 4.9722 1.2617 13 7 8.0074 4.5667 2.2288 14 6 7.3612 6.9849 -0.1208 15 6 8.8540 7.1513 -0.2434 16 1 9.4967 6.2834 -0.2338 17 6 9.3988 8.4112 -0.3741 18 7 8.6160 9.4680 -0.3861 19 14 11.2484 8.6169 -0.5338 20 1 11.9003 7.2833 -0.4926 21 1 11.5630 9.2815 -1.8241 22 1 11.7527 9.4496 0.5877 23 6 3.5375 2.1238 0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 0.1611 2.3503 0.0005 28 1 0.7129 4.7469 0.0011 29 1 3.0631 5.4732 0.0134 30 1 5.8911 3.2321 0.0017 31 1 5.0819 5.7868 0.8932 32 1 5.0822 5.7881 -0.8867 33 1 7.0082 7.5135 0.7648 34 1 6.8760 7.3951 -1.0063 35 1 8.9993 10.3544 -0.4777 36 1 4.3289 1.3889 -0.0001 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000554476176.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:45 Heat of formation + Delta-G solvation = 22.387687 kcal Electronic energy + Delta-G solvation = -17622.742407 eV Core-core repulsion = 14810.733307 eV Total energy + Delta-G solvation = -2812.009100 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 276.099 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.35219 -38.64777 -36.47247 -35.41744 -33.56073 -31.85772 -30.80143 -29.45022 -27.94606 -25.35034 -23.96154 -23.19417 -22.50863 -18.91791 -18.69575 -18.31118 -17.15013 -17.09168 -16.66681 -16.10192 -15.52122 -15.13899 -15.00117 -14.74849 -14.62117 -14.39926 -14.33956 -14.19066 -13.88026 -13.48498 -13.35487 -13.15022 -12.93916 -12.60584 -12.47922 -12.36545 -12.23958 -12.03554 -11.51220 -11.25907 -11.18485 -11.09329 -10.56722 -10.40769 -8.54940 -8.22089 -8.21230 -6.29049 0.38027 0.63596 0.67703 1.38538 1.42268 1.51650 1.55480 1.90346 1.92996 2.38487 2.51451 2.90345 3.12659 3.17929 3.92289 4.03856 4.25767 4.27832 4.31742 4.33100 4.38070 4.56820 4.67449 4.72901 4.83619 4.87461 4.89974 4.99808 5.32662 5.42691 5.45475 5.58818 5.63208 5.76838 5.83391 6.16037 6.39573 6.68654 6.77609 6.86056 7.39747 8.89798 Molecular weight = 276.10amu Principal moments of inertia in cm(-1) A = 0.040284 B = 0.002968 C = 0.002846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.898271 B = 9433.045898 C = 9837.510293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 S -0.161 6.161 3 C -0.047 4.047 4 C -0.201 4.201 5 C -0.054 4.054 6 C -0.213 4.213 7 C 0.228 3.772 8 N -0.745 5.745 9 C 0.143 3.857 10 C 0.010 3.990 11 H 0.129 0.871 12 C 0.250 3.750 13 N -0.501 5.501 14 C 0.039 3.961 15 C -0.539 4.539 16 H 0.054 0.946 17 C 0.013 3.987 18 N -0.921 5.921 19 Si 0.947 3.053 20 H -0.270 1.270 21 H -0.273 1.273 22 H -0.286 1.286 23 C -0.198 4.198 24 H 0.092 0.908 25 H 0.094 0.906 26 H 0.124 0.876 27 H 0.140 0.860 28 H 0.149 0.851 29 H 0.133 0.867 30 H 0.401 0.599 31 H 0.063 0.937 32 H 0.099 0.901 33 H 0.006 0.994 34 H 0.043 0.957 35 H 0.264 0.736 36 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.556 -14.302 -3.040 23.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.300 4.300 2 S 0.081 5.919 3 C -0.160 4.160 4 C -0.226 4.226 5 C -0.074 4.074 6 C -0.238 4.238 7 C 0.122 3.878 8 N -0.374 5.374 9 C 0.018 3.982 10 C -0.011 4.011 11 H 0.146 0.854 12 C -0.067 4.067 13 N -0.178 5.178 14 C 0.000 4.000 15 C -0.577 4.577 16 H 0.073 0.927 17 C -0.187 4.187 18 N -0.561 5.561 19 Si 0.773 3.227 20 H -0.195 1.195 21 H -0.199 1.199 22 H -0.212 1.212 23 C -0.226 4.226 24 H 0.111 0.889 25 H 0.113 0.887 26 H 0.142 0.858 27 H 0.157 0.843 28 H 0.166 0.834 29 H 0.151 0.849 30 H 0.236 0.764 31 H 0.081 0.919 32 H 0.117 0.883 33 H 0.024 0.976 34 H 0.061 0.939 35 H 0.073 0.927 36 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -17.230 -15.589 -1.596 23.290 hybrid contribution 0.730 1.492 -0.232 1.677 sum -16.500 -14.097 -1.828 21.779 Atomic orbital electron populations 1.23745 0.91353 1.08321 1.06591 1.85561 1.10262 1.03474 1.92615 1.21513 0.95995 0.96673 1.01820 1.21154 0.98486 0.93043 1.09918 1.21102 0.96002 0.95655 0.94647 1.20977 0.92488 0.99368 1.10937 1.17788 0.84919 0.92411 0.92668 1.44796 1.03957 1.06844 1.81784 1.21367 0.91888 0.81650 1.03281 1.19390 0.94297 0.99408 0.88035 0.85367 1.29427 0.91694 0.90993 0.94540 1.80941 1.10954 1.12464 1.13431 1.18973 0.95614 0.87534 0.97850 1.21558 0.93565 0.92524 1.50084 0.92730 1.25681 1.01927 0.96029 0.95033 1.70026 1.36457 0.98661 1.50980 0.85663 0.81040 0.78151 0.77819 1.19460 1.19860 1.21215 1.20177 0.95356 0.94050 1.13036 0.88924 0.88742 0.85793 0.84276 0.83352 0.84880 0.76412 0.91860 0.88326 0.97575 0.93924 0.92668 0.86216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.40 9.15 113.37 1.04 -0.37 16 2 S -0.16 -3.14 22.56 -56.49 -1.27 -4.41 16 3 C -0.05 -1.07 6.11 22.61 0.14 -0.94 16 4 C -0.20 -3.96 9.36 22.44 0.21 -3.75 16 5 C -0.05 -1.06 10.03 22.23 0.22 -0.83 16 6 C -0.21 -4.91 9.31 22.43 0.21 -4.70 16 7 C 0.23 5.77 6.65 38.19 0.25 6.03 16 8 N -0.74 -18.67 5.52 -339.50 -1.87 -20.55 16 9 C 0.14 3.79 4.27 86.38 0.37 4.15 16 10 C 0.01 0.35 2.26 -12.60 -0.03 0.32 16 11 H 0.13 3.76 8.14 -2.38 -0.02 3.74 16 12 C 0.25 9.60 13.44 89.47 1.20 10.80 16 13 N -0.50 -21.39 18.52 19.97 0.37 -21.02 16 14 C 0.04 1.70 4.42 29.85 0.13 1.83 16 15 C -0.54 -27.54 8.60 25.60 0.22 -27.32 16 16 H 0.05 2.77 7.59 -2.91 -0.02 2.74 16 17 C 0.01 0.67 5.46 84.66 0.46 1.13 16 18 N -0.92 -51.61 13.29 21.45 0.28 -51.33 16 19 Si 0.95 42.62 29.54 68.60 2.03 44.65 16 20 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 21 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 22 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 23 C -0.20 -5.00 9.64 22.54 0.22 -4.78 16 24 H 0.09 0.86 7.74 -2.39 -0.02 0.85 16 25 H 0.09 0.85 7.75 -2.39 -0.02 0.83 16 26 H 0.12 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.14 2.01 5.87 -2.91 -0.02 1.99 16 28 H 0.15 2.06 8.06 -2.91 -0.02 2.04 16 29 H 0.13 2.83 6.72 -2.91 -0.02 2.81 16 30 H 0.40 9.69 8.23 -92.71 -0.76 8.93 16 31 H 0.06 1.73 7.93 -2.39 -0.02 1.71 16 32 H 0.10 2.31 7.96 -2.39 -0.02 2.29 16 33 H 0.01 0.28 8.14 -2.38 -0.02 0.26 16 34 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 35 H 0.26 14.06 8.31 -92.70 -0.77 13.29 16 36 H 0.12 2.96 8.06 -2.91 -0.02 2.94 16 Total: -1.00 -63.02 326.24 4.51 -58.52 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: 0.33 Total: 12.56 kcal Atomic # 6 Polarization: -23.07 SS G_CDS: 4.65 Total: -18.42 kcal Atomic # 7 Polarization: -91.67 SS G_CDS: -1.22 Total: -92.89 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 2.03 Total: 44.65 kcal Atomic # 16 Polarization: -3.14 SS G_CDS: -1.27 Total: -4.41 kcal Total: -63.02 4.51 -58.52 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000554476176.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.904 kcal (2) G-P(sol) polarization free energy of solvation -63.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.516 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds