Wall clock time and date at job start Mon Mar 30 2020 01:35:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81394 * 1 3 3 C 1.76197 * 102.99966 * 2 1 4 4 C 1.38920 * 120.00602 * 180.02562 * 3 2 1 5 5 C 1.38078 * 119.99166 * 180.02562 * 4 3 2 6 6 C 1.38866 * 120.00755 * 0.02562 * 5 4 3 7 7 N 1.40008 * 119.99501 * 179.97438 * 6 5 4 8 8 C 1.46500 * 120.00035 * 179.97438 * 7 6 5 9 9 C 1.52996 * 109.46949 * 179.97438 * 8 7 6 10 10 H 1.09000 * 109.47753 * 305.00252 * 9 8 7 11 11 C 1.47204 * 109.47042 * 65.00020 * 9 8 7 12 12 N 9.11275 * 103.79825 * 345.45133 * 2 1 3 13 13 C 1.52996 * 109.47153 * 184.99976 * 9 8 7 14 14 C 1.50702 * 109.47159 * 175.00123 * 13 9 8 15 15 H 1.08002 * 120.00299 * 0.02562 * 14 13 9 16 16 C 1.37884 * 119.99942 * 179.72211 * 14 13 9 17 17 N 1.31514 * 119.99985 * 180.27663 * 16 14 13 18 18 Si 1.86800 * 119.99777 * 0.28166 * 16 14 13 19 19 H 1.48498 * 109.47109 * 89.99834 * 18 16 14 20 20 H 1.48507 * 109.46754 * 209.99574 * 18 16 14 21 21 H 1.48498 * 109.47278 * 329.99405 * 18 16 14 22 22 C 1.38872 * 120.01116 * 0.23292 * 6 5 4 23 23 C 1.38068 * 120.00434 * 359.49401 * 22 6 5 24 24 H 1.09003 * 109.47207 * 299.99921 * 1 2 3 25 25 H 1.09000 * 109.47242 * 59.99949 * 1 2 3 26 26 H 1.09001 * 109.47465 * 180.02562 * 1 2 3 27 27 H 1.07993 * 120.00450 * 359.97438 * 4 3 2 28 28 H 1.08008 * 119.99404 * 179.97438 * 5 4 3 29 29 H 0.97002 * 119.99361 * 359.97438 * 7 6 5 30 30 H 1.08997 * 109.46786 * 59.99951 * 8 7 6 31 31 H 1.08996 * 109.47381 * 300.00149 * 8 7 6 32 32 H 1.09004 * 109.47066 * 55.00326 * 13 9 8 33 33 H 1.08994 * 109.47405 * 295.00156 * 13 9 8 34 34 H 0.96996 * 119.99730 * 180.02562 * 17 16 14 35 35 H 1.08000 * 119.99677 * 179.74456 * 22 6 5 36 36 H 1.08002 * 120.00252 * 180.25757 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2103 1.7168 0.0000 4 6 3.5387 2.1231 -0.0005 5 6 3.8490 3.4686 0.0000 6 6 2.8333 4.4155 0.0016 7 7 3.1482 5.7797 0.0027 8 6 2.0767 6.7788 0.0038 9 6 2.6875 8.1816 0.0055 10 1 3.3730 8.2785 0.8474 11 6 3.4212 8.3988 -1.2520 12 7 3.9874 8.5660 -2.2231 13 6 1.5736 9.2227 0.1324 14 6 2.1814 10.5960 0.2575 15 1 3.2548 10.7145 0.2472 16 6 1.3669 11.7019 0.3790 17 7 1.8973 12.9009 0.4828 18 14 -0.4897 11.4971 0.3964 19 1 -0.9540 11.3101 1.7945 20 1 -1.1268 12.7090 -0.1789 21 1 -0.8643 10.3096 -0.4127 22 6 1.5052 4.0096 0.0076 23 6 1.1944 2.6644 0.0013 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 4.3287 1.3868 -0.0005 28 1 4.8818 3.7845 0.0000 29 1 4.0758 6.0633 0.0027 30 1 1.4608 6.6500 0.8938 31 1 1.4603 6.6516 -0.8860 32 1 0.9750 9.0082 1.0178 33 1 0.9390 9.1856 -0.7529 34 1 1.3243 13.6788 0.5686 35 1 0.7155 4.7463 0.0130 36 1 0.1615 2.3487 0.0018 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000554479133.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:47 Heat of formation + Delta-G solvation = 42.104993 kcal Electronic energy + Delta-G solvation = -17671.046271 eV Core-core repulsion = 14859.892177 eV Total energy + Delta-G solvation = -2811.154094 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 276.099 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.49791 -37.36664 -35.19356 -33.71207 -32.07115 -31.27384 -29.57513 -28.97177 -26.89710 -24.08617 -22.61191 -21.75028 -21.40596 -17.98618 -17.34954 -17.04121 -16.79322 -15.90224 -14.92229 -14.64017 -14.52791 -14.19000 -13.98283 -13.88193 -13.71551 -13.43251 -13.17346 -12.85463 -12.62351 -12.54338 -12.28221 -11.95404 -11.64302 -11.39100 -11.22151 -10.99321 -10.59059 -10.46994 -10.38286 -10.13676 -9.91261 -9.45294 -9.07735 -8.70680 -8.46403 -6.97857 -6.19568 -4.21588 1.30642 1.38366 1.44858 2.32002 3.19337 3.28284 3.28465 3.32506 3.40285 3.50527 3.72121 4.30085 4.49632 4.71186 4.79608 4.80035 4.84638 5.05539 5.14739 5.22667 5.35185 5.40191 5.43979 5.54516 5.74686 5.85806 5.95088 6.09235 6.12043 6.21283 6.29514 6.65168 6.77651 6.96937 7.24974 7.52103 7.66610 8.20004 8.31182 8.82497 9.39413 10.93336 Molecular weight = 276.10amu Principal moments of inertia in cm(-1) A = 0.028721 B = 0.003234 C = 0.002983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.676471 B = 8655.215816 C = 9385.141664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 S -0.140 6.140 3 C -0.149 4.149 4 C -0.048 4.048 5 C -0.181 4.181 6 C 0.224 3.776 7 N -0.745 5.745 8 C 0.127 3.873 9 C 0.008 3.992 10 H 0.114 0.886 11 C 0.234 3.766 12 N -0.457 5.457 13 C -0.002 4.002 14 C -0.532 4.532 15 H 0.074 0.926 16 C 0.072 3.928 17 N -0.895 5.895 18 Si 0.878 3.122 19 H -0.274 1.274 20 H -0.286 1.286 21 H -0.264 1.264 22 C -0.181 4.181 23 C -0.080 4.080 24 H 0.082 0.918 25 H 0.082 0.918 26 H 0.103 0.897 27 H 0.124 0.876 28 H 0.125 0.875 29 H 0.401 0.599 30 H 0.081 0.919 31 H 0.066 0.934 32 H 0.037 0.963 33 H 0.028 0.972 34 H 0.266 0.734 35 H 0.128 0.872 36 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.167 -23.710 2.108 24.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.308 4.308 2 S 0.099 5.901 3 C -0.262 4.262 4 C -0.072 4.072 5 C -0.205 4.205 6 C 0.118 3.882 7 N -0.373 5.373 8 C 0.002 3.998 9 C -0.014 4.014 10 H 0.132 0.868 11 C -0.083 4.083 12 N -0.133 5.133 13 C -0.041 4.041 14 C -0.570 4.570 15 H 0.092 0.908 16 C -0.130 4.130 17 N -0.532 5.532 18 Si 0.704 3.296 19 H -0.199 1.199 20 H -0.212 1.212 21 H -0.188 1.188 22 C -0.205 4.205 23 C -0.104 4.104 24 H 0.101 0.899 25 H 0.101 0.899 26 H 0.122 0.878 27 H 0.142 0.858 28 H 0.143 0.857 29 H 0.236 0.764 30 H 0.099 0.901 31 H 0.084 0.916 32 H 0.055 0.945 33 H 0.046 0.954 34 H 0.076 0.924 35 H 0.145 0.855 36 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -1.879 -24.138 0.655 24.220 hybrid contribution -1.675 1.442 0.383 2.243 sum -3.554 -22.696 1.039 22.996 Atomic orbital electron populations 1.23596 0.95042 1.06682 1.05511 1.85255 1.06223 1.04555 1.94089 1.21241 0.96496 0.95551 1.12956 1.20426 0.94107 0.95148 0.97522 1.20529 0.98304 0.91941 1.09774 1.17894 0.93346 0.84114 0.92859 1.44969 1.08961 1.01981 1.81419 1.21569 0.90042 0.85720 1.02438 1.19205 0.98320 0.94786 0.89076 0.86840 1.28958 0.92939 0.91999 0.94449 1.81086 1.10640 1.09510 1.12092 1.19616 0.92717 0.93715 0.98079 1.20979 0.95352 0.88795 1.51884 0.90771 1.24990 0.98843 0.95076 0.94131 1.69897 1.35785 0.98312 1.49223 0.86815 0.85746 0.78164 0.78832 1.19908 1.21219 1.18820 1.20583 0.94786 0.95740 1.09386 1.20881 0.97833 0.92457 0.99251 0.89915 0.89945 0.87808 0.85826 0.85712 0.76406 0.90114 0.91563 0.94474 0.95419 0.92428 0.85460 0.86181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.93 9.15 101.05 0.92 -0.01 16 2 S -0.14 -1.37 22.56 -107.50 -2.43 -3.80 16 3 C -0.15 -1.67 6.11 -39.08 -0.24 -1.91 16 4 C -0.05 -0.54 9.78 -39.39 -0.39 -0.92 16 5 C -0.18 -2.03 9.89 -39.41 -0.39 -2.42 16 6 C 0.22 2.68 6.66 -83.66 -0.56 2.12 16 7 N -0.74 -8.83 5.53 -58.57 -0.32 -9.16 16 8 C 0.13 1.60 4.28 -4.04 -0.02 1.58 16 9 C 0.01 0.13 2.26 -93.41 -0.21 -0.08 16 10 H 0.11 1.68 8.14 -51.93 -0.42 1.26 16 11 C 0.23 4.42 13.45 -20.74 -0.28 4.14 16 12 N -0.46 -9.65 18.54 42.17 0.78 -8.87 16 13 C 0.00 -0.05 3.49 -27.88 -0.10 -0.14 16 14 C -0.53 -13.76 9.15 -34.44 -0.32 -14.07 16 15 H 0.07 2.11 7.84 -52.49 -0.41 1.70 16 16 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 17 N -0.89 -26.38 13.96 55.43 0.77 -25.61 16 18 Si 0.88 19.94 27.47 -169.99 -4.67 15.27 16 19 H -0.27 -6.02 7.11 56.52 0.40 -5.61 16 20 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 21 H -0.26 -5.62 6.54 56.52 0.37 -5.26 16 22 C -0.18 -2.07 9.31 -39.41 -0.37 -2.44 16 23 C -0.08 -0.87 9.36 -39.39 -0.37 -1.24 16 24 H 0.08 0.51 7.74 -51.92 -0.40 0.11 16 25 H 0.08 0.52 7.75 -51.92 -0.40 0.12 16 26 H 0.10 0.53 8.14 -51.92 -0.42 0.10 16 27 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 28 H 0.12 1.20 8.06 -52.48 -0.42 0.78 16 29 H 0.40 4.52 8.23 -40.82 -0.34 4.19 16 30 H 0.08 0.89 7.94 -51.93 -0.41 0.48 16 31 H 0.07 0.84 7.96 -51.93 -0.41 0.43 16 32 H 0.04 0.68 7.58 -51.93 -0.39 0.29 16 33 H 0.03 0.57 7.19 -51.93 -0.37 0.19 16 34 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 35 H 0.13 1.33 6.73 -52.49 -0.35 0.97 16 36 H 0.12 1.06 5.87 -52.49 -0.31 0.75 16 LS Contribution 322.68 15.07 4.86 4.86 Total: -1.00 -30.72 322.68 -8.06 -38.78 By element: Atomic # 1 Polarization: 6.69 SS G_CDS: -4.66 Total: 2.03 kcal Atomic # 6 Polarization: -11.12 SS G_CDS: -2.40 Total: -13.51 kcal Atomic # 7 Polarization: -44.86 SS G_CDS: 1.23 Total: -43.63 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -4.67 Total: 15.27 kcal Atomic # 16 Polarization: -1.37 SS G_CDS: -2.43 Total: -3.80 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -30.72 -8.06 -38.78 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000554479133.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.887 kcal (2) G-P(sol) polarization free energy of solvation -30.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.782 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds