Wall clock time and date at job start Mon Mar 30 2020 01:35:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81394 * 1 3 3 C 1.76197 * 102.99966 * 2 1 4 4 C 1.38920 * 120.00602 * 180.02562 * 3 2 1 5 5 C 1.38078 * 119.99166 * 180.02562 * 4 3 2 6 6 C 1.38866 * 120.00755 * 0.02562 * 5 4 3 7 7 N 1.40008 * 119.99501 * 179.97438 * 6 5 4 8 8 C 1.46500 * 120.00035 * 179.97438 * 7 6 5 9 9 C 1.52996 * 109.46949 * 179.97438 * 8 7 6 10 10 H 1.09000 * 109.47753 * 305.00252 * 9 8 7 11 11 C 1.47204 * 109.47042 * 65.00020 * 9 8 7 12 12 N 9.11275 * 103.79825 * 345.45133 * 2 1 3 13 13 C 1.52996 * 109.47153 * 184.99976 * 9 8 7 14 14 C 1.50702 * 109.47159 * 175.00123 * 13 9 8 15 15 H 1.08002 * 120.00299 * 0.02562 * 14 13 9 16 16 C 1.37884 * 119.99942 * 179.72211 * 14 13 9 17 17 N 1.31514 * 119.99985 * 180.27663 * 16 14 13 18 18 Si 1.86800 * 119.99777 * 0.28166 * 16 14 13 19 19 H 1.48498 * 109.47109 * 89.99834 * 18 16 14 20 20 H 1.48507 * 109.46754 * 209.99574 * 18 16 14 21 21 H 1.48498 * 109.47278 * 329.99405 * 18 16 14 22 22 C 1.38872 * 120.01116 * 0.23292 * 6 5 4 23 23 C 1.38068 * 120.00434 * 359.49401 * 22 6 5 24 24 H 1.09003 * 109.47207 * 299.99921 * 1 2 3 25 25 H 1.09000 * 109.47242 * 59.99949 * 1 2 3 26 26 H 1.09001 * 109.47465 * 180.02562 * 1 2 3 27 27 H 1.07993 * 120.00450 * 359.97438 * 4 3 2 28 28 H 1.08008 * 119.99404 * 179.97438 * 5 4 3 29 29 H 0.97002 * 119.99361 * 359.97438 * 7 6 5 30 30 H 1.08997 * 109.46786 * 59.99951 * 8 7 6 31 31 H 1.08996 * 109.47381 * 300.00149 * 8 7 6 32 32 H 1.09004 * 109.47066 * 55.00326 * 13 9 8 33 33 H 1.08994 * 109.47405 * 295.00156 * 13 9 8 34 34 H 0.96996 * 119.99730 * 180.02562 * 17 16 14 35 35 H 1.08000 * 119.99677 * 179.74456 * 22 6 5 36 36 H 1.08002 * 120.00252 * 180.25757 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2103 1.7168 0.0000 4 6 3.5387 2.1231 -0.0005 5 6 3.8490 3.4686 0.0000 6 6 2.8333 4.4155 0.0016 7 7 3.1482 5.7797 0.0027 8 6 2.0767 6.7788 0.0038 9 6 2.6875 8.1816 0.0055 10 1 3.3730 8.2785 0.8474 11 6 3.4212 8.3988 -1.2520 12 7 3.9874 8.5660 -2.2231 13 6 1.5736 9.2227 0.1324 14 6 2.1814 10.5960 0.2575 15 1 3.2548 10.7145 0.2472 16 6 1.3669 11.7019 0.3790 17 7 1.8973 12.9009 0.4828 18 14 -0.4897 11.4971 0.3964 19 1 -0.9540 11.3101 1.7945 20 1 -1.1268 12.7090 -0.1789 21 1 -0.8643 10.3096 -0.4127 22 6 1.5052 4.0096 0.0076 23 6 1.1944 2.6644 0.0013 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 4.3287 1.3868 -0.0005 28 1 4.8818 3.7845 0.0000 29 1 4.0758 6.0633 0.0027 30 1 1.4608 6.6500 0.8938 31 1 1.4603 6.6516 -0.8860 32 1 0.9750 9.0082 1.0178 33 1 0.9390 9.1856 -0.7529 34 1 1.3243 13.6788 0.5686 35 1 0.7155 4.7463 0.0130 36 1 0.1615 2.3487 0.0018 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000554479133.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:46 Heat of formation + Delta-G solvation = 24.307977 kcal Electronic energy + Delta-G solvation = -17671.818007 eV Core-core repulsion = 14859.892177 eV Total energy + Delta-G solvation = -2811.925830 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 276.099 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.35870 -38.66388 -36.42962 -35.35033 -33.70712 -32.09330 -30.60584 -29.66225 -28.26719 -25.24258 -23.68938 -23.11420 -22.43862 -18.99814 -18.82658 -18.45961 -17.79127 -16.96261 -16.27906 -15.60586 -15.48886 -15.33650 -14.95374 -14.90512 -14.67332 -14.44736 -14.41836 -14.18944 -13.97938 -13.55934 -13.45708 -13.21945 -12.96735 -12.72082 -12.50238 -12.17933 -11.97391 -11.71867 -11.69052 -11.40655 -11.29771 -11.07567 -10.73482 -9.89096 -9.26650 -8.25420 -7.78666 -6.31683 0.49230 0.54578 0.77523 1.43769 1.46724 1.56349 1.64824 1.87639 1.91274 2.41022 2.49000 2.89033 3.08541 3.15791 3.85782 3.96136 4.07139 4.25782 4.33267 4.34936 4.45876 4.52612 4.61675 4.71665 4.80887 4.86211 4.90867 5.08665 5.19791 5.25780 5.39542 5.40970 5.47690 5.62030 5.83480 6.22532 6.39071 6.68559 6.76959 6.80821 7.33222 8.91405 Molecular weight = 276.10amu Principal moments of inertia in cm(-1) A = 0.028721 B = 0.003234 C = 0.002983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.676471 B = 8655.215816 C = 9385.141664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 S -0.168 6.168 3 C -0.157 4.157 4 C -0.060 4.060 5 C -0.188 4.188 6 C 0.211 3.789 7 N -0.747 5.747 8 C 0.139 3.861 9 C 0.016 3.984 10 H 0.126 0.874 11 C 0.247 3.753 12 N -0.503 5.503 13 C -0.002 4.002 14 C -0.533 4.533 15 H 0.030 0.970 16 C 0.002 3.998 17 N -0.955 5.955 18 Si 0.948 3.052 19 H -0.257 1.257 20 H -0.298 1.298 21 H -0.234 1.234 22 C -0.188 4.188 23 C -0.085 4.085 24 H 0.090 0.910 25 H 0.088 0.912 26 H 0.121 0.879 27 H 0.132 0.868 28 H 0.134 0.866 29 H 0.402 0.598 30 H 0.107 0.893 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.031 0.969 34 H 0.265 0.735 35 H 0.140 0.860 36 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.612 -26.055 2.726 26.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.300 4.300 2 S 0.071 5.929 3 C -0.271 4.271 4 C -0.084 4.084 5 C -0.212 4.212 6 C 0.105 3.895 7 N -0.376 5.376 8 C 0.014 3.986 9 C -0.006 4.006 10 H 0.144 0.856 11 C -0.070 4.070 12 N -0.180 5.180 13 C -0.041 4.041 14 C -0.571 4.571 15 H 0.048 0.952 16 C -0.194 4.194 17 N -0.595 5.595 18 Si 0.771 3.229 19 H -0.181 1.181 20 H -0.225 1.225 21 H -0.157 1.157 22 C -0.212 4.212 23 C -0.109 4.109 24 H 0.109 0.891 25 H 0.107 0.893 26 H 0.140 0.860 27 H 0.150 0.850 28 H 0.152 0.848 29 H 0.237 0.763 30 H 0.124 0.876 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.049 0.951 34 H 0.073 0.927 35 H 0.158 0.842 36 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -4.317 -26.535 1.276 26.914 hybrid contribution -0.826 2.114 0.192 2.278 sum -5.143 -24.421 1.467 25.000 Atomic orbital electron populations 1.23691 0.92032 1.08114 1.06206 1.85345 1.09625 1.03964 1.94003 1.21463 0.96749 0.96345 1.12534 1.20638 0.94654 0.95404 0.97667 1.20706 0.98874 0.92042 1.09576 1.18018 0.93861 0.83977 0.93628 1.44865 1.08842 1.01945 1.81975 1.21450 0.89953 0.83357 1.03863 1.19257 0.97260 0.96116 0.87929 0.85604 1.29616 0.92144 0.90641 0.94559 1.81089 1.12099 1.11050 1.13759 1.19571 0.93867 0.91215 0.99443 1.21385 0.93603 0.91958 1.50115 0.95201 1.26054 1.04792 0.94556 0.94042 1.70088 1.37890 0.99556 1.51989 0.85696 0.78567 0.78629 0.80031 1.18101 1.22485 1.15650 1.20804 0.94868 0.96349 1.09209 1.21138 0.98761 0.92227 0.98771 0.89093 0.89296 0.86047 0.85016 0.84797 0.76320 0.87558 0.91254 0.91294 0.95056 0.92666 0.84237 0.84265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.40 9.15 113.37 1.04 -0.36 16 2 S -0.17 -3.02 22.56 -56.49 -1.27 -4.30 16 3 C -0.16 -3.26 6.11 22.60 0.14 -3.12 16 4 C -0.06 -1.26 9.78 22.40 0.22 -1.04 16 5 C -0.19 -3.96 9.89 22.38 0.22 -3.74 16 6 C 0.21 4.59 6.66 38.14 0.25 4.85 16 7 N -0.75 -16.03 5.53 -339.21 -1.88 -17.90 16 8 C 0.14 3.02 4.28 86.38 0.37 3.39 16 9 C 0.02 0.48 2.26 -12.60 -0.03 0.45 16 10 H 0.13 3.49 8.14 -2.39 -0.02 3.47 16 11 C 0.25 9.17 13.45 89.44 1.20 10.37 16 12 N -0.50 -21.35 18.54 20.01 0.37 -20.98 16 13 C 0.00 -0.07 3.49 29.85 0.10 0.03 16 14 C -0.53 -27.52 9.15 25.60 0.23 -27.29 16 15 H 0.03 1.75 7.84 -2.91 -0.02 1.73 16 16 C 0.00 0.13 5.47 84.66 0.46 0.59 16 17 N -0.95 -57.98 13.96 21.45 0.30 -57.68 16 18 Si 0.95 39.90 27.47 68.60 1.88 41.79 16 19 H -0.26 -10.05 7.11 99.48 0.71 -9.35 16 20 H -0.30 -13.05 7.11 99.48 0.71 -12.35 16 21 H -0.23 -8.63 6.54 99.48 0.65 -7.98 16 22 C -0.19 -3.80 9.31 22.38 0.21 -3.60 16 23 C -0.09 -1.63 9.36 22.39 0.21 -1.42 16 24 H 0.09 0.84 7.74 -2.39 -0.02 0.82 16 25 H 0.09 0.85 7.75 -2.39 -0.02 0.84 16 26 H 0.12 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.13 2.42 8.06 -2.91 -0.02 2.40 16 28 H 0.13 2.44 8.06 -2.91 -0.02 2.42 16 29 H 0.40 8.43 8.23 -92.71 -0.76 7.67 16 30 H 0.11 1.84 7.94 -2.39 -0.02 1.82 16 31 H 0.07 1.51 7.96 -2.39 -0.02 1.49 16 32 H 0.07 2.21 7.58 -2.38 -0.02 2.19 16 33 H 0.03 1.17 7.19 -2.39 -0.02 1.15 16 34 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 35 H 0.14 2.39 6.73 -2.91 -0.02 2.38 16 36 H 0.14 2.02 5.87 -2.91 -0.02 2.00 16 Total: -1.00 -68.41 322.68 4.31 -64.10 By element: Atomic # 1 Polarization: 15.59 SS G_CDS: 0.28 Total: 15.86 kcal Atomic # 6 Polarization: -25.52 SS G_CDS: 4.63 Total: -20.89 kcal Atomic # 7 Polarization: -95.36 SS G_CDS: -1.21 Total: -96.56 kcal Atomic # 14 Polarization: 39.90 SS G_CDS: 1.88 Total: 41.79 kcal Atomic # 16 Polarization: -3.02 SS G_CDS: -1.27 Total: -4.30 kcal Total: -68.41 4.31 -64.10 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000554479133.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.405 kcal (2) G-P(sol) polarization free energy of solvation -68.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.097 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds