Wall clock time and date at job start Mon Mar 30 2020 01:35:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81396 * 1 3 3 C 1.76196 * 102.99926 * 2 1 4 4 C 1.38925 * 120.00670 * 179.97438 * 3 2 1 5 5 C 1.38076 * 119.99353 * 180.02562 * 4 3 2 6 6 C 1.38873 * 120.00602 * 0.25918 * 5 4 3 7 7 N 1.40000 * 119.99289 * 179.72099 * 6 5 4 8 8 C 1.46497 * 119.99805 * 180.02562 * 7 6 5 9 9 C 1.53002 * 109.47120 * 179.97438 * 8 7 6 10 10 H 1.09008 * 109.47038 * 55.00097 * 9 8 7 11 11 C 1.47199 * 109.47275 * 294.99866 * 9 8 7 12 12 N 9.10859 * 103.82079 * 14.76180 * 2 1 3 13 13 C 1.53004 * 109.47319 * 174.99684 * 9 8 7 14 14 C 1.50698 * 109.47110 * 185.00224 * 13 9 8 15 15 H 1.07997 * 120.00241 * 359.97438 * 14 13 9 16 16 C 1.37882 * 119.99857 * 180.02562 * 14 13 9 17 17 N 1.31511 * 119.99714 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99960 * 179.97438 * 16 14 13 19 19 H 1.48507 * 109.46939 * 0.02562 * 18 16 14 20 20 H 1.48498 * 109.46877 * 120.00060 * 18 16 14 21 21 H 1.48494 * 109.47059 * 240.00009 * 18 16 14 22 22 C 1.38869 * 120.00934 * 359.48819 * 6 5 4 23 23 C 1.38076 * 120.00691 * 0.50728 * 22 6 5 24 24 H 1.09006 * 109.46705 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47400 * 300.00009 * 1 2 3 26 26 H 1.08995 * 109.47192 * 60.00237 * 1 2 3 27 27 H 1.07999 * 120.00189 * 0.02562 * 4 3 2 28 28 H 1.08002 * 119.99296 * 179.97438 * 5 4 3 29 29 H 0.97001 * 120.00094 * 359.97438 * 7 6 5 30 30 H 1.08999 * 109.47314 * 299.99324 * 8 7 6 31 31 H 1.09003 * 109.47448 * 60.00350 * 8 7 6 32 32 H 1.08997 * 109.46950 * 305.00334 * 13 9 8 33 33 H 1.09006 * 109.46888 * 65.00289 * 13 9 8 34 34 H 0.96998 * 119.99578 * 179.97438 * 17 16 14 35 35 H 1.08007 * 119.99784 * 180.25671 * 22 6 5 36 36 H 1.08002 * 120.00168 * 179.72292 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7168 0.0000 4 6 3.5388 2.1232 0.0005 5 6 3.8491 3.4686 0.0011 6 6 2.8333 4.4156 0.0065 7 7 3.1482 5.7797 0.0130 8 6 2.0768 6.7787 0.0193 9 6 2.6875 8.1816 0.0262 10 1 3.3723 8.2839 -0.8158 11 6 3.4223 8.3906 1.2844 12 7 3.9899 8.5529 2.2537 13 6 1.5734 9.2235 -0.0930 14 6 2.1811 10.5976 -0.2098 15 1 3.2546 10.7159 -0.1996 16 6 1.3667 11.7037 -0.3287 17 7 0.0595 11.5596 -0.3407 18 14 2.1199 13.4070 -0.4728 19 1 3.6005 13.2984 -0.4345 20 1 1.7025 14.0259 -1.7565 21 1 1.6556 14.2508 0.6575 22 6 1.5053 4.0096 0.0007 23 6 1.1944 2.6643 0.0000 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 4.3288 1.3867 0.0005 28 1 4.8818 3.7845 0.0019 29 1 4.0758 6.0633 0.0140 30 1 1.4596 6.6553 -0.8706 31 1 1.4617 6.6463 0.9094 32 1 0.9741 9.0147 -0.9792 33 1 0.9396 9.1806 0.7927 34 1 -0.5134 12.3378 -0.4239 35 1 0.7154 4.7463 0.0007 36 1 0.1615 2.3487 0.0000 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000554479135.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:48 Heat of formation + Delta-G solvation = 22.421865 kcal Electronic energy + Delta-G solvation = -17617.995370 eV Core-core repulsion = 14805.987752 eV Total energy + Delta-G solvation = -2812.007618 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 276.099 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.36082 -38.63853 -36.43687 -35.40578 -33.54519 -32.08237 -30.42394 -29.61035 -28.03204 -25.31355 -23.95219 -23.18307 -22.47032 -18.88362 -18.59898 -18.35974 -17.79792 -16.88736 -16.51622 -15.66721 -15.45648 -15.30181 -14.98216 -14.75015 -14.64184 -14.46560 -14.27447 -14.18159 -13.87279 -13.48914 -13.44073 -13.15160 -12.94392 -12.72017 -12.56447 -12.39091 -12.11393 -11.95582 -11.51932 -11.37259 -11.20879 -11.08298 -10.57010 -9.89793 -9.27117 -8.21434 -7.78998 -6.29297 0.48520 0.53955 0.77376 1.38439 1.42257 1.51466 1.64071 1.89924 1.92500 2.38217 2.51246 2.88324 3.12545 3.17863 3.89594 3.97956 4.06387 4.28753 4.32836 4.34744 4.45240 4.56500 4.65637 4.71928 4.83716 4.90010 4.91522 5.07960 5.25767 5.39206 5.45167 5.47008 5.58545 5.76720 5.82697 6.15523 6.37315 6.69435 6.80146 6.86362 7.39620 8.89568 Molecular weight = 276.10amu Principal moments of inertia in cm(-1) A = 0.036601 B = 0.002951 C = 0.002801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.827697 B = 9486.175520 C = 9995.765116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 S -0.164 6.164 3 C -0.158 4.158 4 C -0.059 4.059 5 C -0.186 4.186 6 C 0.210 3.790 7 N -0.744 5.744 8 C 0.142 3.858 9 C 0.011 3.989 10 H 0.130 0.870 11 C 0.250 3.750 12 N -0.501 5.501 13 C 0.039 3.961 14 C -0.539 4.539 15 H 0.055 0.945 16 C 0.013 3.987 17 N -0.921 5.921 18 Si 0.947 3.053 19 H -0.270 1.270 20 H -0.274 1.274 21 H -0.286 1.286 22 C -0.191 4.191 23 C -0.085 4.085 24 H 0.122 0.878 25 H 0.087 0.913 26 H 0.089 0.911 27 H 0.135 0.865 28 H 0.137 0.863 29 H 0.403 0.597 30 H 0.097 0.903 31 H 0.061 0.939 32 H 0.042 0.958 33 H 0.005 0.995 34 H 0.264 0.736 35 H 0.134 0.866 36 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.071 -21.264 -3.140 21.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.301 4.301 2 S 0.074 5.926 3 C -0.271 4.271 4 C -0.082 4.082 5 C -0.210 4.210 6 C 0.104 3.896 7 N -0.374 5.374 8 C 0.017 3.983 9 C -0.011 4.011 10 H 0.148 0.852 11 C -0.066 4.066 12 N -0.178 5.178 13 C 0.000 4.000 14 C -0.577 4.577 15 H 0.073 0.927 16 C -0.187 4.187 17 N -0.561 5.561 18 Si 0.773 3.227 19 H -0.194 1.194 20 H -0.199 1.199 21 H -0.213 1.213 22 C -0.215 4.215 23 C -0.109 4.109 24 H 0.141 0.859 25 H 0.106 0.894 26 H 0.108 0.892 27 H 0.153 0.847 28 H 0.155 0.845 29 H 0.238 0.762 30 H 0.115 0.885 31 H 0.079 0.921 32 H 0.060 0.940 33 H 0.023 0.977 34 H 0.073 0.927 35 H 0.151 0.849 36 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 2.247 -21.820 -1.691 22.000 hybrid contribution -0.504 2.520 -0.212 2.579 sum 1.743 -19.299 -1.902 19.471 Atomic orbital electron populations 1.23693 0.92158 1.08130 1.06153 1.85292 1.09491 1.03765 1.94005 1.21470 0.96756 0.96392 1.12516 1.20657 0.94604 0.95418 0.97533 1.20713 0.98851 0.91960 1.09485 1.18034 0.93819 0.84072 0.93630 1.44847 1.08759 1.01884 1.81922 1.21346 0.89913 0.83931 1.03094 1.19382 0.97498 0.96111 0.88061 0.85237 1.29480 0.91948 0.90685 0.94528 1.81009 1.12391 1.11083 1.13318 1.18976 0.92156 0.91089 0.97794 1.21560 0.93120 0.92883 1.50155 0.92657 1.25681 0.95236 1.02728 0.95026 1.70023 1.03821 1.31250 1.51032 0.85667 0.78812 0.80441 0.77783 1.19393 1.19896 1.21262 1.20790 0.94963 0.96361 1.09413 1.21118 0.98792 0.92168 0.98815 0.85945 0.89382 0.89184 0.84747 0.84483 0.76165 0.88516 0.92075 0.93992 0.97671 0.92687 0.84856 0.84412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.58 9.15 113.37 1.04 -0.54 16 2 S -0.16 -3.10 22.56 -56.49 -1.27 -4.38 16 3 C -0.16 -3.47 6.11 22.60 0.14 -3.33 16 4 C -0.06 -1.28 9.78 22.40 0.22 -1.06 16 5 C -0.19 -4.09 9.89 22.38 0.22 -3.87 16 6 C 0.21 4.98 6.66 38.14 0.25 5.24 16 7 N -0.74 -17.45 5.53 -339.20 -1.88 -19.33 16 8 C 0.14 3.65 4.28 86.38 0.37 4.02 16 9 C 0.01 0.36 2.26 -12.60 -0.03 0.33 16 10 H 0.13 3.67 8.14 -2.38 -0.02 3.65 16 11 C 0.25 9.37 13.45 89.45 1.20 10.57 16 12 N -0.50 -20.94 18.53 19.99 0.37 -20.57 16 13 C 0.04 1.66 4.42 29.85 0.13 1.79 16 14 C -0.54 -27.26 8.60 25.60 0.22 -27.04 16 15 H 0.06 2.77 7.59 -2.91 -0.02 2.75 16 16 C 0.01 0.66 5.46 84.66 0.46 1.13 16 17 N -0.92 -51.34 13.29 21.45 0.28 -51.05 16 18 Si 0.95 42.30 29.54 68.60 2.03 44.33 16 19 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 20 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 21 H -0.29 -12.87 7.11 99.48 0.71 -12.16 16 22 C -0.19 -4.39 9.31 22.38 0.21 -4.18 16 23 C -0.09 -1.81 9.36 22.39 0.21 -1.60 16 24 H 0.12 1.00 8.14 -2.39 -0.02 0.98 16 25 H 0.09 0.98 7.74 -2.39 -0.02 0.96 16 26 H 0.09 0.97 7.74 -2.39 -0.02 0.95 16 27 H 0.13 2.52 8.06 -2.91 -0.02 2.49 16 28 H 0.14 2.54 8.06 -2.91 -0.02 2.51 16 29 H 0.40 8.83 8.23 -92.71 -0.76 8.07 16 30 H 0.10 2.22 7.94 -2.39 -0.02 2.20 16 31 H 0.06 1.64 7.96 -2.39 -0.02 1.62 16 32 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.00 0.23 8.14 -2.38 -0.02 0.21 16 34 H 0.26 13.99 8.31 -92.71 -0.77 13.22 16 35 H 0.13 2.84 6.73 -2.91 -0.02 2.82 16 36 H 0.14 2.32 5.87 -2.91 -0.02 2.30 16 Total: -1.00 -61.85 326.27 4.50 -57.35 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: 0.33 Total: 12.21 kcal Atomic # 6 Polarization: -23.20 SS G_CDS: 4.65 Total: -18.55 kcal Atomic # 7 Polarization: -89.73 SS G_CDS: -1.22 Total: -90.95 kcal Atomic # 14 Polarization: 42.30 SS G_CDS: 2.03 Total: 44.33 kcal Atomic # 16 Polarization: -3.10 SS G_CDS: -1.27 Total: -4.38 kcal Total: -61.85 4.50 -57.35 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000554479135.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.769 kcal (2) G-P(sol) polarization free energy of solvation -61.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.347 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds