Wall clock time and date at job start Mon Mar 30 2020 01:33:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34777 * 120.00345 * 2 1 4 4 O 1.21283 * 120.00463 * 179.97438 * 3 2 1 5 5 C 1.50700 * 119.99675 * 359.72090 * 3 2 1 6 6 C 1.53004 * 109.47208 * 180.27843 * 5 3 2 7 7 C 1.50700 * 109.47208 * 180.02562 * 6 5 3 8 8 H 1.08002 * 119.99770 * 359.97438 * 7 6 5 9 9 C 1.37871 * 120.00083 * 179.97438 * 7 6 5 10 10 N 1.31514 * 119.99715 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 120.00278 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.46986 * 89.99874 * 11 9 7 13 13 H 1.48492 * 109.47096 * 210.00135 * 11 9 7 14 14 H 1.48497 * 109.46659 * 329.99959 * 11 9 7 15 15 C 1.39649 * 119.99865 * 179.97438 * 2 1 3 16 16 C 1.39051 * 119.92754 * 269.72199 * 15 2 1 17 17 C 1.37727 * 120.10892 * 179.75942 * 16 15 2 18 18 C 1.39772 * 119.95836 * 0.52172 * 17 16 15 19 19 C 1.43199 * 120.07072 * 179.71642 * 18 17 16 20 20 N 6.73731 * 120.02155 * 179.97438 * 2 1 3 21 21 C 1.39763 * 119.85479 * 359.73800 * 18 17 16 22 22 C 1.37908 * 119.89707 * 359.97438 * 21 18 17 23 23 F 1.35092 * 119.98372 * 179.97438 * 22 21 18 24 24 H 1.08997 * 109.47115 * 90.00316 * 1 2 3 25 25 H 1.08995 * 109.47364 * 210.00706 * 1 2 3 26 26 H 1.09002 * 109.47090 * 330.00257 * 1 2 3 27 27 H 1.09009 * 109.47352 * 300.27556 * 5 3 2 28 28 H 1.08998 * 109.47585 * 60.27844 * 5 3 2 29 29 H 1.08995 * 109.46638 * 300.00002 * 6 5 3 30 30 H 1.08998 * 109.46846 * 59.99549 * 6 5 3 31 31 H 0.97012 * 120.00031 * 180.02562 * 10 9 7 32 32 H 1.07995 * 119.94499 * 0.02562 * 16 15 2 33 33 H 1.07990 * 120.02160 * 180.25584 * 17 16 15 34 34 H 1.08003 * 120.05874 * 180.02562 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1672 0.0005 5 6 1.3854 2.4723 -0.0064 6 6 2.3797 3.6352 -0.0120 7 6 1.6262 4.9403 -0.0177 8 1 0.5462 4.9403 -0.0178 9 6 2.3156 6.1343 -0.0229 10 7 3.6307 6.1342 -0.0233 11 14 1.3816 7.7521 -0.0307 12 1 1.1335 8.1871 1.3673 13 1 2.1845 8.7837 -0.7351 14 1 0.0844 7.5713 -0.7305 15 6 2.1632 -1.2094 0.0005 16 6 2.5151 -1.8067 1.2059 17 6 3.1994 -3.0020 1.2108 18 6 3.5503 -3.6103 0.0023 19 6 4.2671 -4.8500 0.0047 20 7 4.8358 -5.8334 0.0026 21 6 3.2006 -3.0058 -1.2083 22 6 2.5102 -1.8119 -1.2062 23 9 2.1716 -1.2258 -2.3753 24 1 -0.3633 -0.0001 -1.0276 25 1 -0.3634 -0.8899 0.5139 26 1 -0.3633 0.8900 0.5138 27 1 0.7588 2.5257 -0.8967 28 1 0.7587 2.5344 0.8833 29 1 3.0063 3.5817 0.8782 30 1 3.0064 3.5730 -0.9017 31 1 4.1158 6.9743 -0.0266 32 1 2.2476 -1.3348 2.1397 33 1 3.4683 -3.4667 2.1478 34 1 3.4697 -3.4732 -2.1440 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000589763949.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:46 Heat of formation + Delta-G solvation = -23.264391 kcal Electronic energy + Delta-G solvation = -20123.276740 eV Core-core repulsion = 16743.074842 eV Total energy + Delta-G solvation = -3380.201899 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 276.101 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -49.07048 -40.41139 -38.88208 -36.77693 -35.37780 -33.57132 -31.61506 -31.13506 -30.31385 -26.84023 -26.12179 -24.04690 -23.22237 -21.59967 -19.61008 -19.16811 -17.32751 -17.13235 -16.84890 -16.36257 -15.91802 -15.45835 -15.13454 -14.58152 -14.40332 -14.34802 -14.20993 -13.75064 -13.41608 -13.26670 -12.93840 -12.65510 -12.39218 -12.31665 -12.20314 -12.14503 -11.82025 -11.19614 -10.96186 -10.63226 -10.02303 -9.72609 -9.49796 -9.31759 -9.14637 -8.96665 -8.91481 -8.35878 -5.99564 -4.04431 0.20211 0.78517 2.28148 2.46196 2.88968 2.98166 3.31178 3.33530 3.37697 3.39901 3.41181 3.98349 4.40085 4.44031 4.55449 4.82041 4.91862 5.15046 5.25484 5.32683 5.35636 5.37855 5.59530 5.63970 5.75138 5.84096 6.09147 6.12494 6.14772 6.69496 6.81729 7.09725 7.38799 7.69621 7.79443 8.01903 8.31506 8.52441 9.03450 9.59483 11.11315 Molecular weight = 276.10amu Principal moments of inertia in cm(-1) A = 0.036281 B = 0.003452 C = 0.003385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.572462 B = 8109.512270 C = 8270.064409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.598 5.598 3 C 0.516 3.484 4 O -0.515 6.515 5 C -0.124 4.124 6 C 0.036 3.964 7 C -0.528 4.528 8 H 0.056 0.944 9 C 0.058 3.942 10 N -0.889 5.889 11 Si 0.893 3.107 12 H -0.280 1.280 13 H -0.286 1.286 14 H -0.274 1.274 15 C 0.149 3.851 16 C -0.084 4.084 17 C -0.072 4.072 18 C -0.004 4.004 19 C 0.259 3.741 20 N -0.411 5.411 21 C -0.102 4.102 22 C 0.108 3.892 23 F -0.123 7.123 24 H 0.060 0.940 25 H 0.070 0.930 26 H 0.087 0.913 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.024 0.976 30 H 0.024 0.976 31 H 0.261 0.739 32 H 0.147 0.853 33 H 0.144 0.856 34 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.363 -18.424 1.339 19.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.332 5.332 3 C 0.307 3.693 4 O -0.388 6.388 5 C -0.164 4.164 6 C -0.002 4.002 7 C -0.566 4.566 8 H 0.075 0.925 9 C -0.143 4.143 10 N -0.527 5.527 11 Si 0.721 3.279 12 H -0.207 1.207 13 H -0.212 1.212 14 H -0.199 1.199 15 C 0.056 3.944 16 C -0.104 4.104 17 C -0.093 4.093 18 C -0.007 4.007 19 C -0.057 4.057 20 N -0.086 5.086 21 C -0.124 4.124 22 C 0.086 3.914 23 F -0.101 7.101 24 H 0.078 0.922 25 H 0.089 0.911 26 H 0.105 0.895 27 H 0.102 0.898 28 H 0.102 0.898 29 H 0.042 0.958 30 H 0.042 0.958 31 H 0.071 0.929 32 H 0.165 0.835 33 H 0.162 0.838 34 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -5.675 -19.743 1.278 20.582 hybrid contribution -0.772 1.402 -0.297 1.628 sum -6.446 -18.341 0.981 19.466 Atomic orbital electron populations 1.21892 0.77716 1.03763 1.02535 1.45743 1.07260 1.03196 1.77039 1.21905 0.88562 0.84921 0.73883 1.90709 1.14314 1.86837 1.46892 1.21925 1.00799 0.90939 1.02723 1.18935 0.93167 0.89329 0.98723 1.21181 0.92924 0.90880 1.51637 0.92530 1.25022 0.94826 0.99260 0.95236 1.69997 1.06070 1.26663 1.49999 0.86584 0.79777 0.83478 0.78071 1.20655 1.21215 1.19860 1.17869 0.96642 0.88260 0.91592 1.21263 0.96908 0.94418 0.97779 1.21110 0.96566 0.94620 0.97029 1.15696 1.00979 0.90098 0.93972 1.25469 0.93515 0.92710 0.93983 1.81277 1.09164 1.11175 1.06981 1.20994 0.98488 0.94292 0.98650 1.17766 0.99352 0.92666 0.81568 1.91553 1.90074 1.83431 1.45071 0.92163 0.91148 0.89460 0.89792 0.89787 0.95754 0.95756 0.92895 0.83504 0.83817 0.83372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.77 10.23 59.84 0.61 1.38 16 2 N -0.60 -8.13 2.72 -120.74 -0.33 -8.46 16 3 C 0.52 9.50 7.64 -10.98 -0.08 9.42 16 4 O -0.52 -11.72 15.95 5.55 0.09 -11.63 16 5 C -0.12 -2.37 4.19 -27.88 -0.12 -2.49 16 6 C 0.04 0.94 4.26 -27.88 -0.12 0.82 16 7 C -0.53 -14.52 9.11 -34.44 -0.31 -14.84 16 8 H 0.06 1.46 7.74 -52.49 -0.41 1.05 16 9 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 10 N -0.89 -26.94 13.29 55.43 0.74 -26.21 16 11 Si 0.89 21.21 29.54 -169.99 -5.02 16.19 16 12 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 13 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 14 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 15 C 0.15 1.83 4.45 -83.61 -0.37 1.46 16 16 C -0.08 -0.81 9.95 -39.47 -0.39 -1.20 16 17 C -0.07 -0.56 9.74 -39.20 -0.38 -0.95 16 18 C 0.00 -0.03 5.74 -106.83 -0.61 -0.65 16 19 C 0.26 2.55 15.33 -22.47 -0.34 2.21 16 20 N -0.41 -4.94 18.54 41.84 0.78 -4.16 16 21 C -0.10 -0.96 9.72 -39.13 -0.38 -1.35 16 22 C 0.11 1.29 7.30 -39.32 -0.29 1.01 16 23 F -0.12 -1.70 17.07 2.25 0.04 -1.66 16 24 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.07 0.47 8.05 -51.93 -0.42 0.06 16 26 H 0.09 0.76 6.45 -51.93 -0.33 0.43 16 27 H 0.08 1.47 8.11 -51.92 -0.42 1.05 16 28 H 0.08 1.41 7.41 -51.93 -0.38 1.03 16 29 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 30 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 31 H 0.26 7.45 8.31 -40.81 -0.34 7.11 16 32 H 0.15 1.21 8.06 -52.49 -0.42 0.79 16 33 H 0.14 0.76 8.06 -52.49 -0.42 0.34 16 34 H 0.15 1.11 8.06 -52.48 -0.42 0.69 16 LS Contribution 316.11 15.07 4.76 4.76 Total: -1.00 -34.55 316.11 -5.47 -40.01 By element: Atomic # 1 Polarization: -1.60 SS G_CDS: -3.63 Total: -5.23 kcal Atomic # 6 Polarization: -0.72 SS G_CDS: -2.89 Total: -3.61 kcal Atomic # 7 Polarization: -40.01 SS G_CDS: 1.18 Total: -38.83 kcal Atomic # 8 Polarization: -11.72 SS G_CDS: 0.09 Total: -11.63 kcal Atomic # 9 Polarization: -1.70 SS G_CDS: 0.04 Total: -1.66 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -34.55 -5.47 -40.01 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589763949.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.750 kcal (2) G-P(sol) polarization free energy of solvation -34.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds