Wall clock time and date at job start Mon Mar 30 2020 01:33:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34777 * 120.00345 * 2 1 4 4 O 1.21283 * 120.00463 * 179.97438 * 3 2 1 5 5 C 1.50700 * 119.99675 * 359.72090 * 3 2 1 6 6 C 1.53004 * 109.47208 * 180.27843 * 5 3 2 7 7 C 1.50700 * 109.47208 * 180.02562 * 6 5 3 8 8 H 1.08002 * 119.99770 * 359.97438 * 7 6 5 9 9 C 1.37871 * 120.00083 * 179.97438 * 7 6 5 10 10 N 1.31514 * 119.99715 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 120.00278 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.46986 * 89.99874 * 11 9 7 13 13 H 1.48492 * 109.47096 * 210.00135 * 11 9 7 14 14 H 1.48497 * 109.46659 * 329.99959 * 11 9 7 15 15 C 1.39649 * 119.99865 * 179.97438 * 2 1 3 16 16 C 1.39051 * 119.92754 * 269.72199 * 15 2 1 17 17 C 1.37727 * 120.10892 * 179.75942 * 16 15 2 18 18 C 1.39772 * 119.95836 * 0.52172 * 17 16 15 19 19 C 1.43199 * 120.07072 * 179.71642 * 18 17 16 20 20 N 6.73731 * 120.02155 * 179.97438 * 2 1 3 21 21 C 1.39763 * 119.85479 * 359.73800 * 18 17 16 22 22 C 1.37908 * 119.89707 * 359.97438 * 21 18 17 23 23 F 1.35092 * 119.98372 * 179.97438 * 22 21 18 24 24 H 1.08997 * 109.47115 * 90.00316 * 1 2 3 25 25 H 1.08995 * 109.47364 * 210.00706 * 1 2 3 26 26 H 1.09002 * 109.47090 * 330.00257 * 1 2 3 27 27 H 1.09009 * 109.47352 * 300.27556 * 5 3 2 28 28 H 1.08998 * 109.47585 * 60.27844 * 5 3 2 29 29 H 1.08995 * 109.46638 * 300.00002 * 6 5 3 30 30 H 1.08998 * 109.46846 * 59.99549 * 6 5 3 31 31 H 0.97012 * 120.00031 * 180.02562 * 10 9 7 32 32 H 1.07995 * 119.94499 * 0.02562 * 16 15 2 33 33 H 1.07990 * 120.02160 * 180.25584 * 17 16 15 34 34 H 1.08003 * 120.05874 * 180.02562 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1672 0.0005 5 6 1.3854 2.4723 -0.0064 6 6 2.3797 3.6352 -0.0120 7 6 1.6262 4.9403 -0.0177 8 1 0.5462 4.9403 -0.0178 9 6 2.3156 6.1343 -0.0229 10 7 3.6307 6.1342 -0.0233 11 14 1.3816 7.7521 -0.0307 12 1 1.1335 8.1871 1.3673 13 1 2.1845 8.7837 -0.7351 14 1 0.0844 7.5713 -0.7305 15 6 2.1632 -1.2094 0.0005 16 6 2.5151 -1.8067 1.2059 17 6 3.1994 -3.0020 1.2108 18 6 3.5503 -3.6103 0.0023 19 6 4.2671 -4.8500 0.0047 20 7 4.8358 -5.8334 0.0026 21 6 3.2006 -3.0058 -1.2083 22 6 2.5102 -1.8119 -1.2062 23 9 2.1716 -1.2258 -2.3753 24 1 -0.3633 -0.0001 -1.0276 25 1 -0.3634 -0.8899 0.5139 26 1 -0.3633 0.8900 0.5138 27 1 0.7588 2.5257 -0.8967 28 1 0.7587 2.5344 0.8833 29 1 3.0063 3.5817 0.8782 30 1 3.0064 3.5730 -0.9017 31 1 4.1158 6.9743 -0.0266 32 1 2.2476 -1.3348 2.1397 33 1 3.4683 -3.4667 2.1478 34 1 3.4697 -3.4732 -2.1440 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000589763949.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:46 Heat of formation + Delta-G solvation = -44.401049 kcal Electronic energy + Delta-G solvation = -20124.193295 eV Core-core repulsion = 16743.074842 eV Total energy + Delta-G solvation = -3381.118453 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 276.101 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -50.03478 -41.51076 -39.93352 -37.73393 -36.49186 -35.58261 -33.19272 -32.02452 -31.45156 -27.97154 -27.67127 -25.32859 -24.03516 -23.23846 -20.55813 -20.38430 -18.89471 -18.19400 -18.02119 -17.41068 -17.22827 -16.60581 -16.45094 -16.42632 -15.47349 -15.11426 -15.05260 -14.79298 -14.58542 -14.51044 -14.19109 -13.82531 -13.74274 -13.44036 -13.26355 -13.17244 -12.93667 -12.79401 -12.62194 -12.45342 -11.90150 -11.59440 -11.29090 -10.87328 -10.54445 -10.17305 -10.00248 -9.86385 -8.15851 -6.29607 -0.60768 0.02244 1.44598 1.47057 1.47637 1.55456 1.57814 1.63349 1.87714 2.44984 2.53316 2.62701 3.16420 3.17684 3.66212 3.82906 3.88450 4.06730 4.16626 4.43590 4.47628 4.51601 4.59918 4.70698 4.87641 4.91934 4.99610 5.07969 5.10554 5.34020 5.51980 5.64454 5.79340 5.87505 6.15184 6.19582 6.30685 6.88790 7.15977 7.40798 8.96763 Molecular weight = 276.10amu Principal moments of inertia in cm(-1) A = 0.036281 B = 0.003452 C = 0.003385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.572462 B = 8109.512270 C = 8270.064409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.585 5.585 3 C 0.516 3.484 4 O -0.573 6.573 5 C -0.112 4.112 6 C 0.042 3.958 7 C -0.540 4.540 8 H 0.078 0.922 9 C -0.007 4.007 10 N -0.938 5.938 11 Si 0.972 3.028 12 H -0.271 1.271 13 H -0.289 1.289 14 H -0.255 1.255 15 C 0.123 3.877 16 C -0.084 4.084 17 C -0.051 4.051 18 C 0.000 4.000 19 C 0.284 3.716 20 N -0.446 5.446 21 C -0.092 4.092 22 C 0.082 3.918 23 F -0.141 7.141 24 H 0.067 0.933 25 H 0.102 0.898 26 H 0.096 0.904 27 H 0.104 0.896 28 H 0.114 0.886 29 H -0.015 1.015 30 H -0.021 1.021 31 H 0.262 0.738 32 H 0.163 0.837 33 H 0.177 0.823 34 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.740 -19.228 2.239 21.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.317 5.317 3 C 0.308 3.692 4 O -0.450 6.450 5 C -0.152 4.152 6 C 0.004 3.996 7 C -0.578 4.578 8 H 0.096 0.904 9 C -0.204 4.204 10 N -0.578 5.578 11 Si 0.796 3.204 12 H -0.196 1.196 13 H -0.215 1.215 14 H -0.178 1.178 15 C 0.030 3.970 16 C -0.103 4.103 17 C -0.072 4.072 18 C -0.003 4.003 19 C -0.031 4.031 20 N -0.122 5.122 21 C -0.114 4.114 22 C 0.062 3.938 23 F -0.119 7.119 24 H 0.085 0.915 25 H 0.121 0.879 26 H 0.115 0.885 27 H 0.122 0.878 28 H 0.132 0.868 29 H 0.004 0.996 30 H -0.003 1.003 31 H 0.071 0.929 32 H 0.180 0.820 33 H 0.195 0.805 34 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -8.124 -20.601 2.178 22.252 hybrid contribution -0.031 1.543 -0.566 1.644 sum -8.155 -19.058 1.613 20.792 Atomic orbital electron populations 1.22244 0.74944 1.05885 1.03692 1.45540 1.08881 1.02382 1.74851 1.21644 0.87733 0.86186 0.73657 1.90683 1.16541 1.87794 1.50013 1.21669 0.99300 0.89128 1.05086 1.18708 0.93712 0.92442 0.94729 1.21703 0.94077 0.91442 1.50597 0.90350 1.26122 0.95683 1.03913 0.94726 1.70181 1.08320 1.27749 1.51564 0.85342 0.78689 0.77817 0.78530 1.19618 1.21496 1.17843 1.18194 0.97973 0.87988 0.92799 1.21429 0.96689 0.94846 0.97298 1.21430 0.94339 0.93449 0.97955 1.15693 1.00810 0.89639 0.94208 1.25403 0.92607 0.92261 0.92866 1.81317 1.10394 1.12318 1.08150 1.21113 0.97208 0.93284 0.99785 1.17972 1.01020 0.93852 0.81006 1.91504 1.90476 1.83922 1.46007 0.91476 0.87927 0.88527 0.87821 0.86769 0.99633 1.00270 0.92928 0.81961 0.80526 0.81750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.15 10.23 127.77 1.31 2.46 16 2 N -0.58 -15.21 2.72 -654.30 -1.78 -16.98 16 3 C 0.52 19.18 7.64 87.66 0.67 19.85 16 4 O -0.57 -27.24 15.95 -3.04 -0.05 -27.29 16 5 C -0.11 -4.26 4.19 29.85 0.13 -4.14 16 6 C 0.04 2.26 4.26 29.85 0.13 2.38 16 7 C -0.54 -29.87 9.11 25.60 0.23 -29.63 16 8 H 0.08 3.89 7.74 -2.91 -0.02 3.87 16 9 C -0.01 -0.40 5.46 84.65 0.46 0.06 16 10 N -0.94 -58.82 13.29 21.45 0.28 -58.54 16 11 Si 0.97 43.40 29.54 68.60 2.03 45.43 16 12 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 13 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 14 H -0.25 -10.50 7.11 99.48 0.71 -9.80 16 15 C 0.12 2.86 4.45 38.34 0.17 3.03 16 16 C -0.08 -1.40 9.95 22.34 0.22 -1.18 16 17 C -0.05 -0.64 9.74 22.52 0.22 -0.42 16 18 C 0.00 0.00 5.74 -21.29 -0.12 -0.12 16 19 C 0.28 5.00 15.33 88.33 1.35 6.36 16 20 N -0.45 -10.07 18.54 19.00 0.35 -9.71 16 21 C -0.09 -1.61 9.72 22.56 0.22 -1.39 16 22 C 0.08 1.92 7.30 22.44 0.16 2.09 16 23 F -0.14 -3.92 17.07 44.97 0.77 -3.15 16 24 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 25 H 0.10 1.01 8.05 -2.39 -0.02 0.99 16 26 H 0.10 1.38 6.45 -2.39 -0.02 1.36 16 27 H 0.10 3.51 8.11 -2.38 -0.02 3.49 16 28 H 0.11 3.61 7.41 -2.39 -0.02 3.59 16 29 H -0.01 -0.90 8.10 -2.39 -0.02 -0.92 16 30 H -0.02 -1.32 8.10 -2.39 -0.02 -1.34 16 31 H 0.26 15.42 8.31 -92.70 -0.77 14.65 16 32 H 0.16 2.21 8.06 -2.91 -0.02 2.19 16 33 H 0.18 1.10 8.06 -2.92 -0.02 1.08 16 34 H 0.16 2.24 8.06 -2.91 -0.02 2.21 16 Total: -1.00 -79.50 316.11 7.88 -71.62 By element: Atomic # 1 Polarization: -1.84 SS G_CDS: 1.13 Total: -0.72 kcal Atomic # 6 Polarization: -5.80 SS G_CDS: 5.15 Total: -0.65 kcal Atomic # 7 Polarization: -84.10 SS G_CDS: -1.14 Total: -85.24 kcal Atomic # 8 Polarization: -27.24 SS G_CDS: -0.05 Total: -27.29 kcal Atomic # 9 Polarization: -3.92 SS G_CDS: 0.77 Total: -3.15 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.43 kcal Total: -79.50 7.88 -71.62 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589763949.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.218 kcal (2) G-P(sol) polarization free energy of solvation -79.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds